{
 "cells": [
  {
   "cell_type": "code",
   "execution_count": 1,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true
   },
   "outputs": [
    {
     "name": "stderr",
     "output_type": "stream",
     "text": [
      "Using TensorFlow backend.\n"
     ]
    }
   ],
   "source": [
    "from keras.models import Model\n",
    "from keras.layers import Dense, Input, LSTM, RepeatVector, GRU\n",
    "import numpy as np\n",
    "import mne\n",
    "import pickle\n",
    "import os\n",
    "from sklearn.preprocessing import MinMaxScaler, StandardScaler\n",
    "from sklearn.model_selection import train_test_split\n",
    "import h5py\n",
    "from random import shuffle"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "deletable": true,
    "editable": true
   },
   "source": [
    "### Load data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 2,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "def read_h5_file(file_name, scaler = None, preprocess = False):\n",
    "    h5_file = h5py.File(train_eeg_dir + file_name, 'r')\n",
    "    a_group_key = list(h5_file.keys())[0]\n",
    "    eeg_data = np.array(h5_file[a_group_key]).T\n",
    "    if preprocess:\n",
    "        eeg_data = scaler.transform(eeg_data)\n",
    "    return eeg_data"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 3,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "def train_scaler(scaler, train_eeg_names, log = False):\n",
    "    i = 0\n",
    "    for eeg_name in train_eeg_names:\n",
    "        if log:\n",
    "            print(\"{} from {}\".format(i, len(train_eeg_names)))\n",
    "            print(\"reading:{}\".format(eeg_name))\n",
    "        data = read_h5_file(eeg_name)\n",
    "        i = i+1\n",
    "        scaler.fit(data)\n",
    "        if log:\n",
    "            print(\"trained on {}\".format(eeg_name))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 4,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "def save_scaler(path,scaler):\n",
    "    pickle.dump(scaler, open(path, 'wb'))"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 5,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "def load_scaler(path):\n",
    "    scaler = pickle.load(open(path, 'rb'))\n",
    "    return scaler"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 6,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "train_eeg_dir = \"./data/train/\"\n",
    "trained_scaler_path = \"StandardScaler.p\""
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "Files different from the other, were deleted in some experiments"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 7,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "bad_files = [\"zavrib_post_eeg_eyesopen15021500_processed.h5\",\"shuhova_08022017_rest_eeg_processed.h5\",\"zavrin_15021500_eyesclosed_post_eeg_processed.h5\"]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 8,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Number of EEG overall: 29\n"
     ]
    }
   ],
   "source": [
    "train_eeg_dir = \"./data/train/\"\n",
    "all_train_eeg_names = [x for x in os.listdir(train_eeg_dir) \n",
    "                 if x[-3:] == \".h5\" and x not in bad_files]\n",
    "eeg_num = len(all_train_eeg_names)\n",
    "print(\"Number of EEG overall:\", eeg_num)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 9,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true,
    "scrolled": true
   },
   "outputs": [],
   "source": [
    "if trained_scaler_path:\n",
    "    scaler = load_scaler(trained_scaler_path)\n",
    "else:\n",
    "    scaler = StandardScaler()\n",
    "    print(\"Params before training \", scaler.get_params())\n",
    "    train_scaler(scaler, all_train_eeg_names, log = True)\n",
    "    print(\"Params after training \", scaler.get_params())\n",
    "    save_scaler(\"StandardScaler.p\", scaler)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {},
   "source": [
    "### Train-test files split"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 10,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "test_eeg_name is  2205_miloslavov_post_eeg_processed.h5\n"
     ]
    }
   ],
   "source": [
    "overall_epoch_num = 10\n",
    "file_epoch_num = 2\n",
    "batch_size = 20\n",
    "hist_path = \"train_hist.txt\"\n",
    "\n",
    "test_eeg_name = all_train_eeg_names[5]\n",
    "train_eeg_names = all_train_eeg_names[:5] + all_train_eeg_names[6:]\n",
    "print(\"test_eeg_name is \", test_eeg_name)\n",
    "test_data = read_h5_file(test_eeg_name, scaler, True)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 11,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "channels_num = 58"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "deletable": true,
    "editable": true
   },
   "source": [
    "### GRU"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 12,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "def create_gru_ae(encoding_dim = 58):\n",
    "\n",
    "    encoder_inputs = Input(shape=(None, channels_num))\n",
    "    encoder = GRU(encoding_dim, return_state=True)\n",
    "    encoder_outputs, encoder_state = encoder(encoder_inputs)\n",
    "\n",
    "    encoder = Model(encoder_inputs, encoder_state)\n",
    "    \n",
    "    print(\"Encoder summary: \")\n",
    "    encoder.summary()\n",
    "\n",
    "    decoder_inputs = Input(shape=(None, channels_num))\n",
    "    \n",
    "    decoder_gru = GRU(encoding_dim, return_sequences=True)\n",
    "    decoder_outputs = decoder_gru(decoder_inputs, initial_state=encoder_state)\n",
    "    \n",
    "    autoencoder = Model([encoder_inputs, decoder_inputs], decoder_outputs)\n",
    "    autoencoder.compile(optimizer='adam', loss=\"mse\")\n",
    "    \n",
    "    print(\"Autoencoder summary: \")\n",
    "    autoencoder.summary()\n",
    "    \n",
    "    return encoder, autoencoder"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 13,
   "metadata": {
    "collapsed": true,
    "deletable": true,
    "editable": true
   },
   "outputs": [],
   "source": [
    "dim = 58\n",
    "timestep = 1"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 14,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Encoder summary: \n",
      "_________________________________________________________________\n",
      "Layer (type)                 Output Shape              Param #   \n",
      "=================================================================\n",
      "input_1 (InputLayer)         (None, None, 58)          0         \n",
      "_________________________________________________________________\n",
      "gru_1 (GRU)                  [(None, 58), (None, 58)]  20358     \n",
      "=================================================================\n",
      "Total params: 20,358\n",
      "Trainable params: 20,358\n",
      "Non-trainable params: 0\n",
      "_________________________________________________________________\n",
      "Autoencoder summary: \n",
      "__________________________________________________________________________________________________\n",
      "Layer (type)                    Output Shape         Param #     Connected to                     \n",
      "==================================================================================================\n",
      "input_1 (InputLayer)            (None, None, 58)     0                                            \n",
      "__________________________________________________________________________________________________\n",
      "input_2 (InputLayer)            (None, None, 58)     0                                            \n",
      "__________________________________________________________________________________________________\n",
      "gru_1 (GRU)                     [(None, 58), (None,  20358       input_1[0][0]                    \n",
      "__________________________________________________________________________________________________\n",
      "gru_2 (GRU)                     (None, None, 58)     20358       input_2[0][0]                    \n",
      "                                                                 gru_1[0][1]                      \n",
      "==================================================================================================\n",
      "Total params: 40,716\n",
      "Trainable params: 40,716\n",
      "Non-trainable params: 0\n",
      "__________________________________________________________________________________________________\n"
     ]
    }
   ],
   "source": [
    "encoder, autoencoder = create_gru_ae()"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 16,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "epoch: 0, file: 2403_kutuzova_posteeg_processed.h5\n",
      "Train on 604156 samples, validate on 623250 samples\n",
      "Epoch 1/1\n",
      "  8220/604156 [..............................] - ETA: 5:15 - loss: 0.2556   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     ]
    },
    {
     "ename": "KeyboardInterrupt",
     "evalue": "",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m                         Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-16-0f0ccefbfb7b>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m     19\u001b[0m                                   \u001b[0mepochs\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     20\u001b[0m                                   \u001b[0mbatch_size\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m20\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 21\u001b[0;31m                                   validation_data=([test_data.reshape(-1,timestep,channels_num), test_decoder_states], test_data.reshape(-1,timestep,channels_num)))\n\u001b[0m\u001b[1;32m     22\u001b[0m         \u001b[0mencoder\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msave\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'GRU_encoder_name.p'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     23\u001b[0m         \u001b[0mautoencoder\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msave\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'GRU_autoencoder_name.p'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36mfit\u001b[0;34m(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)\u001b[0m\n\u001b[1;32m   1703\u001b[0m                               \u001b[0minitial_epoch\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0minitial_epoch\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1704\u001b[0m                               \u001b[0msteps_per_epoch\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msteps_per_epoch\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1705\u001b[0;31m                               validation_steps=validation_steps)\n\u001b[0m\u001b[1;32m   1706\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1707\u001b[0m     def evaluate(self, x=None, y=None,\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m_fit_loop\u001b[0;34m(self, f, ins, out_labels, batch_size, epochs, verbose, callbacks, val_f, val_ins, shuffle, callback_metrics, initial_epoch, steps_per_epoch, validation_steps)\u001b[0m\n\u001b[1;32m   1222\u001b[0m                             \u001b[0mins_batch\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_slice_arrays\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbatch_ids\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1223\u001b[0m                         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1224\u001b[0;31m                             \u001b[0mins_batch\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_slice_arrays\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbatch_ids\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m   1225\u001b[0m                     \u001b[0;32mexcept\u001b[0m \u001b[0mTypeError\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1226\u001b[0m                         raise TypeError('TypeError while preparing batch. '\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m_slice_arrays\u001b[0;34m(arrays, start, stop)\u001b[0m\n\u001b[1;32m    383\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mhasattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'shape'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    384\u001b[0m                 \u001b[0mstart\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mstart\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtolist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 385\u001b[0;31m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    386\u001b[0m         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    387\u001b[0m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mstop\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m<listcomp>\u001b[0;34m(.0)\u001b[0m\n\u001b[1;32m    383\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mhasattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'shape'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    384\u001b[0m                 \u001b[0mstart\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mstart\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtolist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 385\u001b[0;31m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    386\u001b[0m         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    387\u001b[0m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mstop\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
     ]
    }
   ],
   "source": [
    "hist_path = \"train_hist_gru_{}_{}.txt\".format(dim, timestep)\n",
    "hist = [[],[]]\n",
    "epoch_num = 10\n",
    "\n",
    "test_decoder_states = (-1)*np.zeros_like(test_data).reshape(-1,timestep,channels_num)\n",
    "\n",
    "for epoch in range(epoch_num):\n",
    "    shuffle(train_eeg_names)\n",
    "    for name in train_eeg_names:\n",
    "        train_data = read_h5_file(name, scaler, True)\n",
    "        train_data = train_data[-len(train_data) % (timestep*channels_num):]\n",
    "        train_data = train_data.reshape(-1,timestep,channels_num)\n",
    "        np.random.shuffle(train_data)\n",
    "        print(\"epoch: {}, file: {}\".format(epoch, name))\n",
    "        decoder_inputs = (-1)*np.zeros_like(train_data).reshape(-1,timestep,channels_num)\n",
    "        history = autoencoder.fit([train_data, decoder_inputs], \n",
    "                                  train_data, \n",
    "                                  verbose=1, \n",
    "                                  epochs=1,\n",
    "                                  batch_size = 20,\n",
    "                                  validation_data=([test_data.reshape(-1,timestep,channels_num), test_decoder_states], test_data.reshape(-1,timestep,channels_num)))\n",
    "        encoder.save('GRU_encoder_name.p')\n",
    "        autoencoder.save('GRU_autoencoder_name.p')\n",
    "        hist[0].append(history.history[\"loss\"])\n",
    "        hist[1].append(history.history[\"val_loss\"])\n",
    "        with open(hist_path, 'wb') as fp:\n",
    "            pickle.dump(hist, fp)"
   ]
  },
  {
   "cell_type": "markdown",
   "metadata": {
    "deletable": true,
    "editable": true
   },
   "source": [
    "### LSTM"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 17,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "channels_num = 58"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 18,
   "metadata": {
    "collapsed": true
   },
   "outputs": [],
   "source": [
    "def create_ae(encoding_dim = 58, timesteps = 1):  \n",
    "    input_data = Input(shape=(timesteps,channels_num))\n",
    "\n",
    "    encoder_lstm = LSTM(encoding_dim, return_state=True)\n",
    "    \n",
    "    encoder_outputs, state_h, state_c = encoder_lstm(input_data)\n",
    "    encoder_states = [state_h, state_c]\n",
    "    \n",
    "    encoder = Model(input_data, encoder_states)\n",
    "    print(\"Encoder summary: \")\n",
    "    encoder.summary()\n",
    "    \n",
    "    decoded = RepeatVector(timesteps)(encoder_outputs)\n",
    "    \n",
    "    decoder_lstm = LSTM(channels_num)\n",
    "    \n",
    "    decoder_outputs = decoder_lstm(decoded, initial_state=encoder_states)\n",
    "    \n",
    "    autoencoder = Model(input_data, decoder_outputs)\n",
    "    autoencoder.compile(optimizer='adam', loss=\"mse\")\n",
    "    \n",
    "    print(\"Autoencoder summary: \")\n",
    "    autoencoder.summary()\n",
    "    \n",
    "    return encoder, autoencoder"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 19,
   "metadata": {
    "collapsed": false
   },
   "outputs": [],
   "source": [
    "enc_dim = 58\n",
    "timestep = 1\n",
    "hist_path = \"train_hist.txt\"\n",
    "hist = [[],[]]"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 20,
   "metadata": {
    "collapsed": false,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "Encoder summary: \n",
      "_________________________________________________________________\n",
      "Layer (type)                 Output Shape              Param #   \n",
      "=================================================================\n",
      "input_3 (InputLayer)         (None, 1, 58)             0         \n",
      "_________________________________________________________________\n",
      "lstm_1 (LSTM)                [(None, 58), (None, 58),  27144     \n",
      "=================================================================\n",
      "Total params: 27,144\n",
      "Trainable params: 27,144\n",
      "Non-trainable params: 0\n",
      "_________________________________________________________________\n",
      "Autoencoder summary: \n",
      "__________________________________________________________________________________________________\n",
      "Layer (type)                    Output Shape         Param #     Connected to                     \n",
      "==================================================================================================\n",
      "input_3 (InputLayer)            (None, 1, 58)        0                                            \n",
      "__________________________________________________________________________________________________\n",
      "lstm_1 (LSTM)                   [(None, 58), (None,  27144       input_3[0][0]                    \n",
      "__________________________________________________________________________________________________\n",
      "repeat_vector_1 (RepeatVector)  (None, 1, 58)        0           lstm_1[0][0]                     \n",
      "__________________________________________________________________________________________________\n",
      "lstm_2 (LSTM)                   (None, 58)           27144       repeat_vector_1[0][0]            \n",
      "                                                                 lstm_1[0][1]                     \n",
      "                                                                 lstm_1[0][2]                     \n",
      "==================================================================================================\n",
      "Total params: 54,288\n",
      "Trainable params: 54,288\n",
      "Non-trainable params: 0\n",
      "__________________________________________________________________________________________________\n"
     ]
    }
   ],
   "source": [
    "encoder, autoencoder = create_ae(enc_dim)"
   ]
  },
  {
   "cell_type": "code",
   "execution_count": 21,
   "metadata": {
    "collapsed": false,
    "deletable": true,
    "editable": true,
    "scrolled": true
   },
   "outputs": [
    {
     "name": "stdout",
     "output_type": "stream",
     "text": [
      "epoch: 0, file: 2403_kutuzova_posteeg_processed.h5\n",
      "Train on 604200 samples, validate on 623250 samples\n",
      "Epoch 1/2\n",
      "  3040/604200 [..............................] - ETA: 10:28 - loss: 0.3611   \b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b\b"
     ]
    },
    {
     "ename": "KeyboardInterrupt",
     "evalue": "",
     "output_type": "error",
     "traceback": [
      "\u001b[0;31m---------------------------------------------------------------------------\u001b[0m",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m                         Traceback (most recent call last)",
      "\u001b[0;32m<ipython-input-21-6686c6a2b2af>\u001b[0m in \u001b[0;36m<module>\u001b[0;34m()\u001b[0m\n\u001b[1;32m     10\u001b[0m                         \u001b[0;31m#batch_size = 2**(overall_epoch_num - epoch),\u001b[0m\u001b[0;34m\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     11\u001b[0m                         \u001b[0mbatch_size\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0;36m20\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m---> 12\u001b[0;31m                         validation_data=(test_data.reshape(-1,1,58), test_data))\n\u001b[0m\u001b[1;32m     13\u001b[0m         \u001b[0mencoder\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msave\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'RNN_encoder.p'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m     14\u001b[0m         \u001b[0mautoencoder\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0msave\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m'RNN_autoencoder.p'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36mfit\u001b[0;34m(self, x, y, batch_size, epochs, verbose, callbacks, validation_split, validation_data, shuffle, class_weight, sample_weight, initial_epoch, steps_per_epoch, validation_steps, **kwargs)\u001b[0m\n\u001b[1;32m   1703\u001b[0m                               \u001b[0minitial_epoch\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0minitial_epoch\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1704\u001b[0m                               \u001b[0msteps_per_epoch\u001b[0m\u001b[0;34m=\u001b[0m\u001b[0msteps_per_epoch\u001b[0m\u001b[0;34m,\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1705\u001b[0;31m                               validation_steps=validation_steps)\n\u001b[0m\u001b[1;32m   1706\u001b[0m \u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1707\u001b[0m     def evaluate(self, x=None, y=None,\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m_fit_loop\u001b[0;34m(self, f, ins, out_labels, batch_size, epochs, verbose, callbacks, val_f, val_ins, shuffle, callback_metrics, initial_epoch, steps_per_epoch, validation_steps)\u001b[0m\n\u001b[1;32m   1222\u001b[0m                             \u001b[0mins_batch\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_slice_arrays\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbatch_ids\u001b[0m\u001b[0;34m)\u001b[0m \u001b[0;34m+\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0;34m-\u001b[0m\u001b[0;36m1\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1223\u001b[0m                         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m-> 1224\u001b[0;31m                             \u001b[0mins_batch\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0m_slice_arrays\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mins\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0mbatch_ids\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m   1225\u001b[0m                     \u001b[0;32mexcept\u001b[0m \u001b[0mTypeError\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m   1226\u001b[0m                         raise TypeError('TypeError while preparing batch. '\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m_slice_arrays\u001b[0;34m(arrays, start, stop)\u001b[0m\n\u001b[1;32m    383\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mhasattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'shape'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    384\u001b[0m                 \u001b[0mstart\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mstart\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtolist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 385\u001b[0;31m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    386\u001b[0m         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    387\u001b[0m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mstop\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;32m/Users/ekaterina/Library/Python/3.6/lib/python/site-packages/keras/engine/training.py\u001b[0m in \u001b[0;36m<listcomp>\u001b[0;34m(.0)\u001b[0m\n\u001b[1;32m    383\u001b[0m             \u001b[0;32mif\u001b[0m \u001b[0mhasattr\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m,\u001b[0m \u001b[0;34m'shape'\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    384\u001b[0m                 \u001b[0mstart\u001b[0m \u001b[0;34m=\u001b[0m \u001b[0mstart\u001b[0m\u001b[0;34m.\u001b[0m\u001b[0mtolist\u001b[0m\u001b[0;34m(\u001b[0m\u001b[0;34m)\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0;32m--> 385\u001b[0;31m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[0m\u001b[1;32m    386\u001b[0m         \u001b[0;32melse\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n\u001b[1;32m    387\u001b[0m             \u001b[0;32mreturn\u001b[0m \u001b[0;34m[\u001b[0m\u001b[0;32mNone\u001b[0m \u001b[0;32mif\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32mis\u001b[0m \u001b[0;32mNone\u001b[0m \u001b[0;32melse\u001b[0m \u001b[0mx\u001b[0m\u001b[0;34m[\u001b[0m\u001b[0mstart\u001b[0m\u001b[0;34m:\u001b[0m\u001b[0mstop\u001b[0m\u001b[0;34m]\u001b[0m \u001b[0;32mfor\u001b[0m \u001b[0mx\u001b[0m \u001b[0;32min\u001b[0m \u001b[0marrays\u001b[0m\u001b[0;34m]\u001b[0m\u001b[0;34m\u001b[0m\u001b[0m\n",
      "\u001b[0;31mKeyboardInterrupt\u001b[0m: "
     ]
    }
   ],
   "source": [
    "for epoch in range(overall_epoch_num):\n",
    "    for name in train_eeg_names:\n",
    "        train_data = read_h5_file(name, scaler, True)\n",
    "        #if len(train_data) > epoch*learn_file_length:\n",
    "        #    train_data = train_data[:learn_file_length]\n",
    "        print(\"epoch: {}, file: {}\".format(epoch, name))\n",
    "        history = autoencoder.fit(train_data.reshape(-1,1,58), train_data, \n",
    "                        verbose=1, \n",
    "                        epochs=file_epoch_num,\n",
    "                        #batch_size = 2**(overall_epoch_num - epoch),\n",
    "                        batch_size = 20,\n",
    "                        validation_data=(test_data.reshape(-1,1,58), test_data))\n",
    "        encoder.save('RNN_encoder.p')\n",
    "        autoencoder.save('RNN_autoencoder.p')\n",
    "        hist[0].append(history.history[\"loss\"])\n",
    "        hist[1].append(history.history[\"val_loss\"])\n",
    "        with open(hist_path, 'wb') as fp:\n",
    "            pickle.dump(hist, fp)"
   ]
  }
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