Make link more specific in guide doc

Normalize indent on paste with multiple selections

apm/package.json

@@ -6,6 +6,6 @@
     "url": "https://github.com/atom/atom.git"
   },
   "dependencies": {
-    "atom-package-manager": "0.109.0"
+    "atom-package-manager": "0.111.0"
   }
 }

atom.sh

@@ -63,7 +63,7 @@ if [ $OS == 'Mac' ]; then
     "$ATOM_PATH/$ATOM_APP_NAME/Contents/MacOS/Atom" --executed-from="$(pwd)" --pid=$$ "$@"
     exit $?
   else
-    open -a "$ATOM_PATH/$ATOM_APP_NAME" -n --args --executed-from="$(pwd)" --pid=$$ "$@"
+    open -a "$ATOM_PATH/$ATOM_APP_NAME" -n --args --executed-from="$(pwd)" --pid=$$ --path-environment="$PATH" "$@"
   fi
 elif [ $OS == 'Linux' ]; then
   SCRIPT=$(readlink -f "$0")

benchmark/benchmark-suite.coffee

@@ -7,7 +7,7 @@ describe "editorView.", ->
 
   beforeEach ->
     atom.workspaceViewParentSelector = '#jasmine-content'
-    atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+    atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
     atom.workspaceView.attachToDom()
 
     atom.workspaceView.width(1024)

build/Gruntfile.coffee

@@ -6,7 +6,6 @@ os = require 'os'
 # modules work under node v0.11.x.
 require 'vm-compatibility-layer'
 
-fm = require 'json-front-matter'
 _ = require 'underscore-plus'
 
 packageJson = require '../package.json'
@@ -22,9 +21,9 @@ module.exports = (grunt) ->
   grunt.loadNpmTasks('grunt-contrib-csslint')
   grunt.loadNpmTasks('grunt-contrib-coffee')
   grunt.loadNpmTasks('grunt-contrib-less')
-  grunt.loadNpmTasks('grunt-markdown')
   grunt.loadNpmTasks('grunt-shell')
   grunt.loadNpmTasks('grunt-download-atom-shell')
+  grunt.loadNpmTasks('grunt-atom-shell-installer')
   grunt.loadNpmTasks('grunt-peg')
   grunt.loadTasks('tasks')
 
@@ -194,32 +193,19 @@ module.exports = (grunt) ->
         'static/**/*.less'
       ]
 
-    markdown:
-      guides:
-        files: [
-          expand: true
-          cwd: 'docs'
-          src: '**/*.md'
-          dest: 'docs/output/'
-          ext: '.html'
-        ]
-        options:
-          template: 'docs/template.jst'
-          templateContext:
-            tag: "v#{major}.#{minor}"
-          markdownOptions:
-            gfm: true
-          preCompile: (src, context) ->
-            parsed = fm.parse(src)
-            _.extend(context, parsed.attributes)
-            parsed.body
-
     'download-atom-shell':
       version: packageJson.atomShellVersion
       outputDir: 'atom-shell'
       downloadDir: atomShellDownloadDir
       rebuild: true  # rebuild native modules after atom-shell is updated
 
+    'create-windows-installer':
+      appDirectory: shellAppDir
+      outputDirectory: path.join(buildDir, 'installer')
+      authors: 'The Atom Team & Community'
+      loadingGif: path.resolve(__dirname, '..', 'resources', 'win', 'loading.gif')
+      iconUrl: 'https://raw.githubusercontent.com/atom/atom/master/resources/atom.png'
+
     shell:
       'kill-atom':
         command: killCommand
@@ -237,6 +223,7 @@ module.exports = (grunt) ->
   ciTasks.push('dump-symbols') if process.platform isnt 'win32'
   ciTasks.push('set-version', 'check-licenses', 'lint')
   ciTasks.push('mkdeb') if process.platform is 'linux'
+  ciTasks.push('create-windows-installer') if process.platform is 'win32'
   ciTasks.push('test') if process.platform is 'darwin'
   ciTasks.push('codesign')
   ciTasks.push('publish-build')

build/package.json

@@ -7,11 +7,12 @@
   },
   "dependencies": {
     "async": "~0.2.9",
-    "donna": "1.0.6",
+    "donna": "1.0.7",
     "formidable": "~1.0.14",
     "fs-plus": "2.x",
     "github-releases": "~0.2.0",
     "grunt": "~0.4.1",
+    "grunt-atom-shell-installer": "^0.7.0",
     "grunt-cli": "~0.1.9",
     "grunt-coffeelint": "git+https://github.com/atom/grunt-coffeelint.git#cfb99aa99811d52687969532bd5a98011ed95bfe",
     "grunt-contrib-coffee": "~0.9.0",
@@ -20,17 +21,13 @@
     "grunt-cson": "0.10.0",
     "grunt-download-atom-shell": "~0.10.0",
     "grunt-lesslint": "0.13.0",
-    "grunt-markdown": "~0.4.0",
     "grunt-peg": "~1.1.0",
     "grunt-shell": "~0.3.1",
     "harmony-collections": "~0.3.8",
-    "json-front-matter": "~0.1.3",
-    "legal-eagle": "~0.4.0",
+    "legal-eagle": "~0.6.0",
     "minidump": "~0.8",
-    "normalize-package-data": "0.2.12",
     "npm": "~1.4.5",
-    "rcedit": "~0.1.2",
-    "read-package-json": "1.1.8",
+    "rcedit": "~0.3.0",
     "request": "~2.27.0",
     "rimraf": "~2.2.2",
     "runas": "~1.0.1",

build/tasks/build-task.coffee

@@ -11,6 +11,7 @@ module.exports = (grunt) ->
     appDir = grunt.config.get('atom.appDir')
 
     rm shellAppDir
+    rm path.join(buildDir, 'installer')
     mkdir path.dirname(buildDir)
 
     if process.platform is 'darwin'

build/tasks/check-licenses-task.coffee

@@ -1,4 +1,3 @@
-
 module.exports = (grunt) ->
   grunt.registerTask 'check-licenses', 'Report the licenses of all dependencies', ->
     legalEagle = require 'legal-eagle'
@@ -13,7 +12,7 @@ module.exports = (grunt) ->
     legalEagle options, (err, summary) ->
       if err?
         console.error(err)
-        exit 1
+        process.exit 1
 
       for key of summary
         delete summary[key] if key.match /^atom@/

build/tasks/codesign-task.coffee

@@ -36,7 +36,7 @@ module.exports = (grunt) ->
           spawn {cmd, args}, (error) ->
             return callback(error) if error?
 
-            setupExePath = path.join(grunt.config.get('atom.shellAppDir'), '..', 'Releases', 'setup.exe')
+            setupExePath = path.resolve(grunt.config.get('atom.buildDir'), 'installer', 'AtomSetup.exe')
             if fs.isFileSync(setupExePath)
               args = [setupExePath]
               spawn {cmd, args}, (error) -> callback(error)

build/tasks/create-installer.coffee

@@ -1,46 +0,0 @@
-fs = require 'fs'
-path = require 'path'
-_ = require 'underscore-plus'
-
-module.exports = (grunt) ->
-  {spawn, rm} = require('./task-helpers')(grunt)
-
-  grunt.registerTask 'create-installer', 'Create the Windows installer', ->
-    return unless process.platform is 'win32'
-
-    done = @async()
-
-    buildDir = grunt.config.get('atom.buildDir')
-    atomDir = path.join(buildDir, 'Atom')
-    releasesDir = path.join(buildDir, 'Releases')
-    atomGitHubToken = process.env.ATOM_ACCESS_TOKEN
-
-    packageInfo = grunt.file.readJSON(path.join(atomDir, 'resources', 'app', 'package.json'))
-    inputTemplate = grunt.file.read(path.join('build', 'windows', 'atom.nuspec.erb'))
-
-    # NB: Build server has some sort of stamp on the version number
-    packageInfo.version = packageInfo.version.replace(/-.*$/, '')
-
-    targetNuspecPath = path.join(buildDir, 'atom.nuspec')
-    grunt.file.write(targetNuspecPath, _.template(inputTemplate, packageInfo))
-
-    # We use the previous releases to build deltas for the current release,
-    # sync down the existing releases directory by rolling through GitHub releases
-    cmd = 'build/windows/SyncGitHubReleases.exe'
-    args = ['-r', releasesDir, '-u', 'https://github.com/atom/atom', '-t', atomGitHubToken]
-
-    spawn {cmd, args}, (error, result, code) ->
-      if error?
-        grunt.log.error "ATOM_ACCESS_TOKEN environment variable not set or invalid, can't download old releases; continuing anyways"
-
-      cmd = 'build/windows/nuget.exe'
-      args = ['pack', targetNuspecPath, '-BasePath', atomDir, '-OutputDirectory', buildDir]
-
-      spawn {cmd, args}, (error, result, code) ->
-        return done(error) if error?
-
-        pkgs = pkg for pkg in fs.readdirSync(buildDir) when path.extname(pkg) is '.nupkg'
-
-        cmd = 'build/windows/update.com'
-        args = ['--releasify', path.join(buildDir, pkgs), '-r', releasesDir, '-g', 'build/windows/install-spinner.gif']
-        spawn {cmd, args}, (error, result, code) -> done(error)

build/tasks/publish-build-task.coffee

@@ -54,6 +54,11 @@ module.exports = (gruntObject) ->
           uploadAssets(release, buildDir, assets, done)
 
 getAssets = ->
+  {cp} = require('./task-helpers')(grunt)
+
+  {version} = grunt.file.readJSON('package.json')
+  buildDir = grunt.config.get('atom.buildDir')
+
   switch process.platform
     when 'darwin'
       [
@@ -62,16 +67,16 @@ getAssets = ->
         {assetName: 'atom-api.json', sourcePath: 'atom-api.json'}
       ]
     when 'win32'
-      [
-        {assetName: 'atom-windows.zip', sourcePath: 'Atom'}
-      ]
+      assets = [{assetName: 'atom-windows.zip', sourcePath: 'Atom'}]
+      for squirrelAsset in ['AtomSetup.exe', 'RELEASES', "atom-#{version}-full.nupkg"]
+        cp path.join(buildDir, 'installer', squirrelAsset), path.join(buildDir, squirrelAsset)
+        assets.push({assetName: squirrelAsset, sourcePath: assetName})
+      assets
     when 'linux'
-      buildDir = grunt.config.get('atom.buildDir')
       if process.arch is 'ia32'
         arch = 'i386'
       else
         arch = 'amd64'
-      {version} = grunt.file.readJSON('package.json')
 
       # Check for a Debian build
       sourcePath = "#{buildDir}/atom-#{version}-#{arch}.deb"
@@ -87,7 +92,6 @@ getAssets = ->
           arch = 'x86_64'
         assetName = "atom.#{arch}.rpm"
 
-      {cp} = require('./task-helpers')(grunt)
       cp sourcePath, path.join(buildDir, assetName)
 
       [
@@ -123,10 +127,22 @@ getAtomDraftRelease = (callback) ->
       logError('Fetching atom/atom releases failed', error, releases)
       callback(error)
     else
-      for release in releases when release.draft
-        callback(null, release)
-        return
-      callback(new Error('No draft release in atom/atom repo'))
+      [firstDraft] = releases.filter ({draft}) -> draft
+      if firstDraft?
+        options =
+          uri: firstDraft.assets_url
+          method: 'GET'
+          headers: defaultHeaders
+          json: true
+        request options, (error, response, assets=[]) ->
+          if error? or response.statusCode isnt 200
+            logError('Fetching draft release assets failed', error, assets)
+            callback(error ? new Error(response.statusCode))
+          else
+            firstDraft.assets = assets
+            callback(null, firstDraft)
+      else
+        callback(new Error('No draft release in atom/atom repo'))
 
 deleteRelease = (release) ->
   options =

build/windows/atom.nuspec.erb

@@ -1,32 +0,0 @@
-<?xml version="1.0" encoding="utf-8"?>
-<package xmlns="http://schemas.microsoft.com/packaging/2010/07/nuspec.xsd">
-    <metadata>
-        <id><%= name %></id>
-        <version><%= version %></version>
-        <authors>The Atom Community</authors>
-        <owners>The Atom Community</owners>
-        <iconUrl>https://raw.githubusercontent.com/atom/atom/master/resources/win/atom.ico</iconUrl>
-        <requireLicenseAcceptance>false</requireLicenseAcceptance>
-        <description><%= description %></description>
-    </metadata>
-    <files>
-        <file src="locales\**" target="lib\net45\locales" />
-        <file src="resources\**" target="lib\net45\resources" />
-        <file src="*.pak" target="lib\net45" />
-
-        <file src="atom.exe" target="lib\net45\atom.exe" />
-        <file src="atom.exe.gui" target="lib\net45\atom.exe.gui" />
-        <file src="chromiumcontent.dll" target="lib\net45\chromiumcontent.dll" />
-        <file src="d3dcompiler_43.dll" target="lib\net45\d3dcompiler_43.dll" />
-        <file src="ffmpegsumo.dll" target="lib\net45\ffmpegsumo.dll" />
-        <file src="icudtl.dat" target="lib\net45\icudtl.dat" />
-        <file src="libEGL.dll" target="lib\net45\libEGL.dll" />
-        <file src="libGLESv2.dll" target="lib\net45\libGLESv2.dll" />
-        <file src="LICENSE" target="lib\net45\LICENSE" />
-        <file src="msvcp120.dll" target="lib\net45\msvcp120.dll" />
-        <file src="msvcr120.dll" target="lib\net45\msvcr120.dll" />
-        <file src="vccorlib120.dll" target="lib\net45\vccorlib120.dll" />
-        <file src="version" target="lib\net45\version" />
-        <file src="xinput1_3.dll" target="lib\net45\xinput1_3.dll" />
-    </files>
-</package>

docs/README.md

@@ -1,60 +1,5 @@
-# Welcome to the Atom API Documentation
+# Welcome to the Atom Docs
 
 ![Atom](https://cloud.githubusercontent.com/assets/72919/2874231/3af1db48-d3dd-11e3-98dc-6066f8bc766f.png)
 
-## FAQ
-
-### Where do I start?
-
-Check out [EditorView][EditorView] and [Editor][Editor] classes for a good
-overview of the main editor API.
-
-### How do I access these classes?
-
-Check out the [Atom][Atom] class docs to see what globals are available and
-what they provide.
-
-You can also require many of these classes in your package via:
-
-```coffee
-{EditorView} = require 'atom'
-```
-
-The classes available from `require 'atom'` are:
-  * [BufferedProcess][BufferedProcess]
-  * [BufferedNodeProcess][BufferedNodeProcess]
-  * [EditorView][EditorView]
-  * [Git][Git]
-  * [Point][Point]
-  * [Range][Range]
-  * [ScrollView][ScrollView]
-  * [SelectListView][SelectListView]
-  * [View][View]
-  * [WorkspaceView][WorkspaceView]
-  * [Workspace][Workspace]
-
-### How do I create a package?
-
-You probably want to read the [creating a package][creating-a-package]
-doc first and come back here when you are done.
-
-### Where are the node docs?
-
-Atom ships with node 0.11.10 and the comprehensive node API docs are available
-[here][node-docs].
-
-[Atom]: ../classes/Atom.html
-[BufferedProcess]: ../classes/BufferedProcess.html
-[BufferedNodeProcess]: ../classes/BufferedNodeProcess.html
-[Editor]: ../classes/Editor.html
-[EditorView]: ../classes/EditorView.html
-[Git]: ../classes/Git.html
-[Point]: ../classes/Point.html
-[Range]: ../classes/Range.html
-[ScrollView]: ../classes/ScrollView.html
-[SelectListView]: ../classes/SelectListView.html
-[View]: ../classes/View.html
-[WorkspaceView]: ../classes/WorkspaceView.html
-[Workspace]: ../classes/Workspace.html
-[creating-a-package]: https://atom.io/docs/latest/creating-a-package
-[node-docs]: http://nodejs.org/docs/v0.11.10/api
+TODO: Write when docs move to a dedicated repo.

docs/advanced/keymaps.md

@@ -16,7 +16,7 @@ keystrokes pass through `atom-text-editor` elements:
   'ctrl-shift-e': 'editor:select-to-end-of-line'
   'cmd-left': 'editor:move-to-first-character-of-line'
 
-'atom-text-editor:not(.mini)'
+'atom-text-editor:not([mini])'
   'cmd-alt-[': 'editor:fold-current-row'
   'cmd-alt-]': 'editor:unfold-current-row'
 ```
@@ -27,8 +27,8 @@ patterns* to *commands*. When an element with the `atom-text-editor` class is fo
 `editor:delete-to-beginning-of-line` is emitted on the `atom-text-editor` element.
 
 The second selector group also targets editors, but only if they don't have the
-`.mini` class. In this example, the commands for code folding don't really make
-sense on mini-editors, so the selector restricts them to regular editors.
+`mini` attribute. In this example, the commands for code folding don't really
+make sense on mini-editors, so the selector restricts them to regular editors.
 
 ### Keystroke Patterns
 

docs/build-instructions/linux.md

@@ -43,7 +43,7 @@ If you have problems with permissions don't forget to prefix with `sudo`
 2. Checkout the latest Atom release:
 
   ```sh
-  git fetch
+  git fetch -p
   git checkout $(git describe --tags `git rev-list --tags --max-count=1`)
   ```
 

docs/customizing-atom.md

@@ -63,7 +63,7 @@ built-in keymaps:
 'atom-text-editor':
   'enter': 'editor:newline'
 
-'atom-text-editor.mini input':
+'atom-text-editor[mini] input':
   'enter': 'core:confirm'
 ```
 

docs/index.md

@@ -20,3 +20,8 @@
 * [Serialization](advanced/serialization.md)
 * [View System](advanced/view-system.md)
 * [Scopes and Scope Descriptors](advanced/scopes-and-scope-descriptors.md)
+
+### Upgrading to 1.0 APIs
+
+* [Upgrading Your UI Theme Or Package Selectors](upgrading/upgrading-your-ui-theme.md)
+* [Upgrading Your Syntax Theme](upgrading/upgrading-your-syntax-theme.md)

docs/template.jst

@@ -1,150 +0,0 @@
-<!DOCTYPE html>
-<html lang="en">
-  <head>
-    <meta charset="utf-8">
-    <meta name="viewport" content="width=device-width, initial-scale=1.0">
-
-    <link href="//netdna.bootstrapcdn.com/bootstrap/3.0.0/css/bootstrap.min.css" rel="stylesheet">
-    <link rel="stylesheet" href="//netdna.bootstrapcdn.com/bootstrap/3.0.0/css/bootstrap-theme.min.css">
-    <!-- HTML5 shim and Respond.js IE8 support of HTML5 elements and media queries -->
-    <!--[if lt IE 9]>
-      <script src="../../assets/js/html5shiv.js"></script>
-      <script src="../../assets/js/respond.min.js"></script>
-    <![endif]-->
-
-    <title>Atom - <%= title %></title>
-    <style>
-      /*github.com style (c) Vasily Polovnyov <vast@whiteants.net>*/
-      pre code {
-        display: block; padding: 0.5em;
-        color: #333;
-        background: #f8f8ff
-      }
-      pre .comment,
-      pre .template_comment,
-      pre .diff .header,
-      pre .javadoc {
-        color: #998;
-        font-style: italic
-      }
-      pre .keyword,
-      pre .css .rule .keyword,
-      pre .winutils,
-      pre .javascript .title,
-      pre .nginx .title,
-      pre .subst,
-      pre .request,
-      pre .status {
-        color: #333;
-        font-weight: bold
-      }
-      pre .number,
-      pre .hexcolor,
-      pre .ruby .constant {
-        color: #099;
-      }
-      pre .string,
-      pre .tag .value,
-      pre .phpdoc,
-      pre .tex .formula {
-        color: #d14
-      }
-      pre .title,
-      pre .id {
-        color: #900;
-        font-weight: bold
-      }
-      pre .javascript .title,
-      pre .lisp .title,
-      pre .clojure .title,
-      pre .subst {
-        font-weight: normal
-      }
-      pre .class .title,
-      pre .haskell .type,
-      pre .vhdl .literal,
-      pre .tex .command {
-        color: #458;
-        font-weight: bold
-      }
-      pre .tag,
-      pre .tag .title,
-      pre .rules .property,
-      pre .django .tag .keyword {
-        color: #000080;
-        font-weight: normal
-      }
-      pre .attribute,
-      pre .variable,
-      pre .lisp .body {
-        color: #008080
-      }
-      pre .regexp {
-        color: #009926
-      }
-      pre .class {
-        color: #458;
-        font-weight: bold
-      }
-      pre .symbol,
-      pre .ruby .symbol .string,
-      pre .lisp .keyword,
-      pre .tex .special,
-      pre .prompt {
-        color: #990073
-      }
-      pre .built_in,
-      pre .lisp .title,
-      pre .clojure .built_in {
-        color: #0086b3
-      }
-      pre .preprocessor,
-      pre .pi,
-      pre .doctype,
-      pre .shebang,
-      pre .cdata {
-        color: #999;
-        font-weight: bold
-      }
-      pre .deletion {
-        background: #fdd
-      }
-      pre .addition {
-        background: #dfd
-      }
-      pre .diff .change {
-        background: #0086b3
-      }
-      pre .chunk {
-        color: #aaa
-      }
-
-      body {
-        padding-top: 50px;
-      }
-    </style>
-  </head>
-  <body>
-   <div class="navbar navbar-inverse navbar-fixed-top">
-      <div class="container">
-        <div class="navbar-header">
-          <button type="button" class="navbar-toggle" data-toggle="collapse" data-target=".navbar-collapse">
-            <span class="icon-bar"></span>
-            <span class="icon-bar"></span>
-            <span class="icon-bar"></span>
-          </button>
-          <a class="navbar-brand" href="/<%= tag %>/index.html">Atom Documentation</a>
-        </div>
-        <div class="collapse navbar-collapse">
-          <ul class="nav navbar-nav">
-            <li><a href="/docs/api/<%= tag %>/api/index.html">API</a></li>
-          </ul>
-        </div><!--/.nav-collapse -->
-      </div>
-    </div>
-
-    <div class="container">
-      <%= content %>
-    </div>
-  </body>
-</html>

docs/upgrading/upgrading-your-syntax-theme.md

@@ -0,0 +1,27 @@
+# Upgrading Your Syntax Theme
+
+Text editor content is now rendered in the shadow DOM, which shields it from being styled by global style sheets to protect against accidental style pollution. For more background on the shadow DOM, check out the [Shadow DOM 101][shadow-dom-101] on HTML 5 Rocks.
+
+Syntax themes are specifically intended to style only text editor content, so they are automatically loaded directly into the text editor's shadow DOM when it is enabled. This happens automatically when the the theme's `package.json` contains a `theme: "syntax"` declaration, so you don't need to change anything to target the appropriate context.
+
+When theme style sheets are loaded into the text editor's shadow DOM, selectors intended to target the editor from the *outside* no longer make sense. Styles targeting the `.editor` and `.editor-colors` classes instead need to target the `:host` pseudo-element, which matches against the containing `atom-text-editor` node. Check out the [Shadow DOM 201][host-pseudo-element] article for more information about the `:host` pseudo-element.
+
+Here's an example from Atom's light syntax theme. Note that the previous selectors intended to target the editor from the outside have been retained to allow the theme to keep working during the transition phase when it is possible to disable the shadow DOM.
+
+```css
+.editor-colors, :host { /* :host added */
+  background-color: @syntax-background-color;
+  color: @syntax-text-color;
+}
+
+.editor, :host { /* :host added */
+  .invisible-character {
+    color: @syntax-invisible-character-color;
+  }
+
+  /* more nested selectors... */
+}
+```
+
+[shadow-dom-101]: http://www.html5rocks.com/en/tutorials/webcomponents/shadowdom
+[host-pseudo-element]: http://www.html5rocks.com/en/tutorials/webcomponents/shadowdom-201#toc-style-host

docs/upgrading/upgrading-your-ui-theme.md

@@ -0,0 +1,137 @@
+# Upgrading Your UI Theme Or Package Selectors
+
+In addition to changes in Atom's scripting API, we'll also be making some breaking changes to Atom's DOM structure, requiring stylesheets and keymaps in both packages and themes to be updated.
+
+## Deprecation Cop
+
+Deprecation cop will list usages of deprecated selector patterns to guide you. You can access it via the command palette (`cmd-shift-p`, then search for `Deprecation`). It breaks the deprecations down by package:
+
+![dep-cop](https://cloud.githubusercontent.com/assets/69169/5078860/d38a5df4-6e64-11e4-95b6-eb585ee9bbfc.png)
+
+## Custom Tags
+
+Rather than adding classes to standard HTML elements to indicate their role, Atom now uses custom element names. For example, `<div class="workspace">` has now been replaced with `<atom-workspace>`. Selectors should be updated accordingly. Note that tag names have lower specificity than classes in CSS, so you'll need to take care in converting things.
+
+Old Selector        | New Selector
+--------------------|--------------------------------
+`.editor`           | `atom-text-editor`
+`.editor.mini`      | `atom-text-editor[mini]`
+`.workspace`        | `atom-workspace`
+`.horizontal`       | `atom-workspace-axis.horizontal`
+`.vertical`         | `atom-workspace-axis.vertical`
+`.pane-container`   | `atom-pane-conatiner`
+`.pane`             | `atom-pane`
+`.tool-panel`       | `atom-panel`
+`.panel-top`        | `atom-panel.top`
+`.panel-bottom`     | `atom-panel.bottom`
+`.panel-left`       | `atom-panel.left`
+`.panel-right`      | `atom-panel.right`
+`.overlay`          | `atom-panel.modal`
+
+## Supporting the Shadow DOM
+
+Text editor content is now rendered in the shadow DOM, which shields it from being styled by global style sheets to protect against accidental style pollution. For more background on the shadow DOM, check out the [Shadow DOM 101][shadow-dom-101] on HTML 5 Rocks. If you need to style text editor content in a UI theme, you'll need to circumvent this protection for any rules that target the text editor's content. Some examples of the kinds of UI theme styles needing to be updated:
+
+* Highlight decorations
+* Gutter decorations
+* Line decorations
+* Scrollbar styling
+* Anything targeting a child selector of `.editor`
+
+During a transition phase, it will be possible to enable or disable the text editor's shadow DOM in the settings, so themes will need to be compatible with both approaches.
+
+### Shadow DOM Selectors
+
+Chromium provides two tools for bypassing shadow boundaries, the `::shadow` pseudo-element and the `/deep/` combinator. For an in-depth explanation of styling the shadow DOM, see the [Shadow DOM 201][shadow-dom-201] article on HTML 5 Rocks.
+
+#### ::shadow
+
+The `::shadow` pseudo-element allows you to bypass a single shadow root. For example, say you want to update a highlight decoration for a linter package. Initially, the style looks as follows:
+
+```css
+// Without shadow DOM support
+atom-text-editor .highlight.my-linter {
+  background: hotpink;
+}
+```
+
+In order for this style to apply with the shadow DOM enabled, you will need to add a second selector with the `::shadow` pseudo-element. You should leave the original selector in place so your theme continues to work with the shadow DOM disabled during the transition period.
+
+```css
+// With shadow DOM support
+atom-text-editor .highlight.my-linter,
+atom-text-editor::shadow .highlight.my-linter {
+  background: hotpink;
+}
+```
+
+Check out the [find-and-replace][find-and-replace] package for another example of using `::shadow` to pierce the shadow DOM.
+
+#### /deep/
+
+The `/deep/` combinator overrides *all* shadow boundaries, making it useful for rules you want to apply globally such as scrollbar styling. Here's a snippet containing scrollbar styling for the Atom Dark UI theme before shadow DOM support:
+
+```css
+// Without shadow DOM support
+.scrollbars-visible-always {
+  ::-webkit-scrollbar {
+    width: 8px;
+    height: 8px;
+  }
+
+  ::-webkit-scrollbar-track,
+  ::-webkit-scrollbar-corner {
+    background: @scrollbar-background-color;
+  }
+
+  ::-webkit-scrollbar-thumb {
+    background: @scrollbar-color;
+    border-radius: 5px;
+    box-shadow: 0 0 1px black inset;
+  }
+}
+```
+
+To style scrollbars even inside of the shadow DOM, each rule needs to be prefixed with `/deep/`. We use `/deep/` instead of `::shadow` because we don't care about the selector of the host element in this case. We just want our styling to apply everywhere.
+
+```css
+// With shadow DOM support using /deep/
+.scrollbars-visible-always {
+  /deep/ ::-webkit-scrollbar {
+    width: 8px;
+    height: 8px;
+  }
+
+  /deep/ ::-webkit-scrollbar-track,
+  /deep/ ::-webkit-scrollbar-corner {
+    background: @scrollbar-background-color;
+  }
+
+  /deep/ ::-webkit-scrollbar-thumb {
+    background: @scrollbar-color;
+    border-radius: 5px;
+    box-shadow: 0 0 1px black inset;
+  }
+}
+```
+
+### Context-Targeted Style Sheets
+
+The selector features discussed above allow you to target shadow DOM content with specific selectors, but Atom also allows you to target a specific shadow DOM context with an entire style sheet. The context into which a style sheet is loaded is based on the file name. If you want to load a style sheet into the editor, name it with the `.atom-text-editor.less` or `.atom-text-editor.css` extensions.
+
+```
+my-ui-theme/
+  stylesheets/
+    index.less                   # loaded globally
+    index.atom-text-editor.less  # loaded in the text editor shadow DOM
+```
+
+Check out this [style sheet](https://github.com/atom/decoration-example/blob/master/stylesheets/decoration-example.atom-text-editor.less) from the decoration-example package for an example of context-targeting.
+
+Inside a context-targeted style sheet, there's no need to use the `::shadow` or `/deep/` expressions. If you want to refer to the element containing the shadow root, you can use the `::host` pseudo-element.
+
+During the transition phase, style sheets targeting the `atom-text-editor` context will *also* be loaded globally. Make sure you update your selectors in a way that maintains compatibility with the shadow DOM being disabled. That means if you use a `::host` pseudo element, you should also include the same style rule matches against `atom-text-editor`.
+
+[shadow-dom-101]: http://www.html5rocks.com/en/tutorials/webcomponents/shadowdom
+[shadow-dom-201]: http://www.html5rocks.com/en/tutorials/webcomponents/shadowdom-201#toc-style-cat-hat
+[find-and-replace]: https://github.com/atom/find-and-replace/blob/95351f261bc384960a69b66bf12eae8002da63f9/stylesheets/find-and-replace.less#L10

dot-atom/init.coffee

@@ -4,11 +4,8 @@
 # after packages are loaded/activated and after the previous editor state
 # has been restored.
 #
-# An example hack to make opened Markdown files always be soft wrapped:
+# An example hack to log to the console when each text editor is saved.
 #
-# path = require 'path'
-#
-# atom.workspaceView.eachEditorView (editorView) ->
-#   editor = editorView.getEditor()
-#   if path.extname(editor.getPath()) is '.md'
-#     editor.setSoftWrapped(true)
+# atom.workspace.observeTextEditors (editor) ->
+#   editor.onDidSave ->
+#     console.log "Saved! #{editor.getPath()}"

dot-atom/keymap.cson

@@ -12,7 +12,7 @@
 # 'atom-text-editor':
 #   'enter': 'editor:newline'
 #
-# '.workspace':
+# 'atom-workspace':
 #   'ctrl-shift-p': 'core:move-up'
 #   'ctrl-p': 'core:move-down'
 #

exports/atom.coffee

@@ -1,4 +1,5 @@
 {Point, Range} = require 'text-buffer'
+{Emitter, Disposable, CompositeDisposable} = require 'event-kit'
 {deprecate} = require 'grim'
 
 module.exports =
@@ -7,29 +8,119 @@ module.exports =
   GitRepository: require '../src/git-repository'
   Point: Point
   Range: Range
+  Emitter: Emitter
+  Disposable: Disposable
+  CompositeDisposable: CompositeDisposable
 
 # The following classes can't be used from a Task handler and should therefore
 # only be exported when not running as a child node process
 unless process.env.ATOM_SHELL_INTERNAL_RUN_AS_NODE
+  module.exports.Task = require '../src/task'
+  module.exports.TextEditor = require '../src/text-editor'
+
   {$, $$, $$$, View} = require '../src/space-pen-extensions'
 
-  module.exports.$ = $
-  module.exports.$$ = $$
-  module.exports.$$$ = $$$
-  module.exports.TextEditorView = require '../src/text-editor-view'
-  module.exports.ScrollView = require '../src/scroll-view'
-  module.exports.SelectListView = require '../src/select-list-view'
-  module.exports.Task = require '../src/task'
-  module.exports.View = View
-  module.exports.WorkspaceView = require '../src/workspace-view'
-  module.exports.Workspace = require '../src/workspace'
-  module.exports.React = require 'react-atom-fork'
-  module.exports.Reactionary = require 'reactionary-atom-fork'
+  Object.defineProperty module.exports, 'Workspace', get: ->
+    deprecate """
+      Requiring `Workspace` from `atom` is no longer supported.
+      If you need this, please open an issue on
+      https://github.com/atom/atom/issues/new
+      And let us know what you are using it for.
+    """
+    require '../src/workspace'
+
+  Object.defineProperty module.exports, 'WorkspaceView', get: ->
+    deprecate """
+      Requiring `WorkspaceView` from `atom` is no longer supported.
+      Use `atom.view.getView(atom.workspace)` instead.
+    """
+    require '../src/workspace-view'
+
+  Object.defineProperty module.exports, '$', get: ->
+    deprecate """
+      Requiring `$` from `atom` is no longer supported.
+      If you are using `space-pen`, please require `$` from `space-pen`. Otherwise require `jquery` instead:
+        `{$} = require 'space-pen'`
+        or
+        `$ = require 'jquery'`
+      Add `"space-pen": "^3"` to your package dependencies.
+      Or add `"jquery": "^2"` to your package dependencies.
+    """
+    $
+
+  Object.defineProperty module.exports, '$$', get: ->
+    deprecate """
+      Requiring `$$` from `atom` is no longer supported.
+      Please require `space-pen` instead:
+        `{$$} = require 'space-pen'`
+      Add `"space-pen": "^3"` to your package dependencies.
+    """
+    $$
+
+  Object.defineProperty module.exports, '$$$', get: ->
+    deprecate """
+      Requiring `$$$` from `atom` is no longer supported.
+      Please require `space-pen` instead:
+        `{$$$} = require 'space-pen'`
+      Add `"space-pen": "^3"` to your package dependencies.
+    """
+    $$$
+
+  Object.defineProperty module.exports, 'View', get: ->
+    deprecate """
+      Requiring `View` from `atom` is no longer supported.
+      Please require `space-pen` instead:
+        `{View} = require 'space-pen'`
+      Add `"space-pen": "^3"` to your package dependencies.
+    """
+    View
+
+  Object.defineProperty module.exports, 'EditorView', get: ->
+    deprecate """
+      Requiring `EditorView` from `atom` is no longer supported.
+      Please require `TextEditorView` from `atom-space-pen-view` instead:
+        `{TextEditorView} = require 'atom-space-pen-views'`
+      Add `"atom-space-pen-views": "^0"` to your package dependencies.
+    """
+    require '../src/text-editor-view'
+
+  Object.defineProperty module.exports, 'TextEditorView', get: ->
+    deprecate """
+      Requiring `TextEditorView` from `atom` is no longer supported.
+      Please require `TextEditorView` from `atom-space-pen-view` instead:
+        `{TextEditorView} = require 'atom-space-pen-views'`
+      Add `"atom-space-pen-views": "^0"` to your package dependencies.
+    """
+    require '../src/text-editor-view'
+
+  Object.defineProperty module.exports, 'ScrollView', get: ->
+    deprecate """
+      Requiring `ScrollView` from `atom` is no longer supported.
+      Please require `ScrollView` from `atom-space-pen-view` instead:
+        `{ScrollView} = require 'atom-space-pen-views'`
+      Note that the API has changed slightly! Please read the docs at https://github.com/atom/atom-space-pen-views
+      Add `"atom-space-pen-views": "^0"` to your package dependencies.
+    """
+    require '../src/scroll-view'
+
+  Object.defineProperty module.exports, 'SelectListView', get: ->
+    deprecate """
+      Requiring `SelectListView` from `atom` is no longer supported.
+      Please require `SelectListView` from `atom-space-pen-view` instead:
+        `{SelectListView} = require 'atom-space-pen-views'`
+      Note that the API has changed slightly! Please read the docs at https://github.com/atom/atom-space-pen-views
+      Add `"atom-space-pen-views": "^0"` to your package dependencies.
+    """
+    require '../src/select-list-view'
+
+  Object.defineProperty module.exports, 'React', get: ->
+    deprecate "Please require `react-atom-fork` instead: `React = require 'react-atom-fork'`. Add `\"react-atom-fork\": \"^0.11\"` to your package dependencies."
+    require 'react-atom-fork'
+
+  Object.defineProperty module.exports, 'Reactionary', get: ->
+    deprecate "Please require `reactionary` instead: `Reactionary = require 'reactionary'`. Add `\"reactionary\": \"^0.9\"` to your package dependencies."
+    require 'reactionary'
 
 Object.defineProperty module.exports, 'Git', get: ->
   deprecate "Please require `GitRepository` instead of `Git`: `{GitRepository} = require 'atom'`"
   module.exports.GitRepository
-
-Object.defineProperty module.exports, 'EditorView', get: ->
-  deprecate "Please require `TextEditorView` instead of `EditorView`: `{TextEditorView} = require 'atom'`"
-  module.exports.TextEditorView

keymaps/base.cson

@@ -5,7 +5,7 @@
   'shift-home': 'editor:select-to-first-character-of-line'
   'shift-end': 'editor:select-to-end-of-line'
 
-'atom-text-editor:not(.mini)':
+'atom-text-editor:not([mini])':
   # Atom Specific
   'ctrl-C': 'editor:copy-path'
 
@@ -15,10 +15,13 @@
   'shift-tab': 'editor:outdent-selected-rows'
   'ctrl-K': 'editor:delete-line'
 
+'.select-list atom-text-editor[mini]':
+  'enter': 'core:confirm'
+
 '.tool-panel.panel-left, .tool-panel.panel-right':
   'escape': 'tool-panel:unfocus'
 
-'atom-text-editor !important, atom-text-editor.mini !important':
+'atom-text-editor !important, atom-text-editor[mini] !important':
   'escape': 'editor:consolidate-selections'
 
 # allow standard input fields to work correctly

keymaps/darwin.cson

@@ -29,6 +29,8 @@
   'ctrl-alt-cmd-l': 'window:reload'
   'alt-cmd-i': 'window:toggle-dev-tools'
   'cmd-alt-ctrl-p': 'window:run-package-specs'
+  'ctrl-shift-left': 'pane:move-item-left'
+  'ctrl-shift-right': 'pane:move-item-right'
 
   # Sublime Parity
   'cmd-,': 'application:show-settings'
@@ -110,7 +112,7 @@
   # Apple Specific
   'cmd-backspace': 'editor:delete-to-beginning-of-line'
   'cmd-shift-backspace': 'editor:delete-to-beginning-of-line'
-  'cmd-delete': 'editor:delete-to-beginning-of-line'
+  'cmd-delete': 'editor:delete-to-end-of-line'
   'ctrl-A': 'editor:select-to-first-character-of-line'
   'ctrl-E': 'editor:select-to-end-of-line'
   'cmd-left': 'editor:move-to-first-character-of-line'
@@ -134,7 +136,7 @@
   'cmd-l': 'editor:select-line'
   'ctrl-t': 'editor:transpose'
 
-'atom-workspace atom-text-editor:not(.mini)':
+'atom-workspace atom-text-editor:not([mini])':
   # Atom specific
   'alt-cmd-z': 'editor:checkout-head-revision'
   'cmd-<': 'editor:scroll-to-cursor'

keymaps/linux.cson

@@ -12,6 +12,8 @@
   'ctrl-alt-s': 'application:run-all-specs'
   'ctrl-alt-o': 'application:open-dev'
   'ctrl-shift-o': 'application:open-folder'
+  'ctrl-shift-pageup': 'pane:move-item-left'
+  'ctrl-shift-pagedown': 'pane:move-item-right'
   'F11': 'window:toggle-full-screen'
 
   # Sublime Parity
@@ -99,7 +101,7 @@
   'ctrl-k ctrl-l': 'editor:lower-case'
   'ctrl-l': 'editor:select-line'
 
-'atom-workspace atom-text-editor:not(.mini)':
+'atom-workspace atom-text-editor:not([mini])':
   # Atom specific
   'alt-ctrl-z': 'editor:checkout-head-revision'
   'ctrl-<': 'editor:scroll-to-cursor'

keymaps/win32.cson

@@ -14,6 +14,10 @@
   'ctrl-alt-i': 'window:toggle-dev-tools'
   'ctrl-alt-p': 'window:run-package-specs'
   'ctrl-alt-s': 'application:run-all-specs'
+  'ctrl-alt-o': 'application:open-dev'
+  'ctrl-shift-o': 'application:open-folder'
+  'ctrl-shift-left': 'pane:move-item-left'
+  'ctrl-shift-right': 'pane:move-item-right'
   'F11': 'window:toggle-full-screen'
 
   # Sublime Parity
@@ -94,7 +98,7 @@
   'ctrl-k ctrl-l': 'editor:lower-case'
   'ctrl-l': 'editor:select-line'
 
-'atom-workspace atom-text-editor:not(.mini)':
+'atom-workspace atom-text-editor:not([mini])':
   # Atom specific
   'alt-ctrl-z': 'editor:checkout-head-revision'
   'ctrl-<': 'editor:scroll-to-cursor'

menus/linux.cson

@@ -94,6 +94,7 @@
     submenu: [
       { label: '&Reload', command: 'window:reload' }
       { label: 'Toggle &Full Screen', command: 'window:toggle-full-screen' }
+      { label: 'Toggle Menu Bar', command: 'window:toggle-menu-bar' }
       {
         label: 'Developer'
         submenu: [

menus/win32.cson

@@ -93,6 +93,7 @@
     submenu: [
       { label: '&Reload', command: 'window:reload' }
       { label: 'Toggle &Full Screen', command: 'window:toggle-full-screen' }
+      { label: 'Toggle Menu Bar', command: 'window:toggle-menu-bar' }
       {
         label: 'Panes'
         submenu: [
@@ -109,7 +110,7 @@
           { label: 'Focus Pane On Left', command: 'window:focus-pane-on-left' }
           { label: 'Focus Pane On Right', command: 'window:focus-pane-on-right' }
           { type: 'separator' }
-          { label: 'Close pane', command: 'pane:close' }
+          { label: 'Close Pane', command: 'pane:close' }
         ]
       }
       {
@@ -162,7 +163,7 @@
     submenu: [
       { label: 'View &Terms of Use', command: 'application:open-terms-of-use' }
       { label: 'View &License', command: 'application:open-license' }
-      { label: "VERSION", enabled: false }
+      { label: 'VERSION', enabled: false }
       { type: 'separator' }
       { label: '&Documentation', command: 'application:open-documentation' }
       { label: 'Roadmap', command: 'application:open-roadmap' }

package.json

@@ -1,7 +1,7 @@
-  {
+{
   "name": "atom",
   "productName": "Atom",
-  "version": "0.141.0",
+  "version": "0.147.0",
   "description": "A hackable text editor for the 21st Century.",
   "main": "./src/browser/main.js",
   "repository": {
@@ -17,10 +17,10 @@
       "url": "http://github.com/atom/atom/raw/master/LICENSE.md"
     }
   ],
-  "atomShellVersion": "0.18.2",
+  "atomShellVersion": "0.19.2",
   "dependencies": {
     "async": "0.2.6",
-    "atom-keymap": "^2.2.1",
+    "atom-keymap": "^2.2.2",
     "bootstrap": "git+https://github.com/atom/bootstrap.git#6af81906189f1747fd6c93479e3d998ebe041372",
     "clear-cut": "0.4.0",
     "coffee-script": "1.7.0",
@@ -37,7 +37,8 @@
     "guid": "0.0.10",
     "jasmine-json": "~0.0",
     "jasmine-tagged": "^1.1.2",
-    "less-cache": "0.17.0",
+    "jquery": "^2.1.1",
+    "less-cache": "0.19.0",
     "mixto": "^1",
     "mkdirp": "0.3.5",
     "nslog": "^1.0.1",
@@ -56,84 +57,84 @@
     "season": "^1.0.2",
     "semver": "2.2.1",
     "serializable": "^1",
-    "space-pen": "3.8.0",
+    "space-pen": "3.8.1",
     "temp": "0.7.0",
-    "text-buffer": "^3.4",
+    "text-buffer": "^3.6.1",
     "theorist": "^1.0.2",
     "underscore-plus": "^1.6.1",
     "vm-compatibility-layer": "0.1.0"
   },
   "packageDependencies": {
-    "atom-dark-syntax": "0.20.0",
-    "atom-dark-ui": "0.35.0",
-    "atom-light-syntax": "0.21.0",
-    "atom-light-ui": "0.30.0",
-    "base16-tomorrow-dark-theme": "0.21.0",
-    "base16-tomorrow-light-theme": "0.4.0",
-    "solarized-dark-syntax": "0.22.0",
-    "solarized-light-syntax": "0.12.0",
+    "atom-dark-syntax": "0.22.0",
+    "atom-dark-ui": "0.39.0",
+    "atom-light-syntax": "0.22.0",
+    "atom-light-ui": "0.33.0",
+    "base16-tomorrow-dark-theme": "0.22.0",
+    "base16-tomorrow-light-theme": "0.5.0",
+    "solarized-dark-syntax": "0.23.0",
+    "solarized-light-syntax": "0.13.0",
     "archive-view": "0.37.0",
-    "autocomplete": "0.32.0",
+    "autocomplete": "0.33.0",
     "autoflow": "0.18.0",
     "autosave": "0.18.0",
     "background-tips": "0.17.0",
-    "bookmarks": "0.28.0",
+    "bookmarks": "0.30.0",
     "bracket-matcher": "0.62.0",
     "command-palette": "0.27.0",
-    "deprecation-cop": "0.11.0",
+    "deprecation-cop": "0.13.0",
     "dev-live-reload": "0.35.0",
-    "encoding-selector": "0.5.0",
+    "encoding-selector": "0.7.0",
     "exception-reporting": "0.20.0",
-    "find-and-replace": "0.141.0",
+    "find-and-replace": "0.147.0",
     "fuzzy-finder": "0.60.0",
-    "git-diff": "0.42.0",
+    "git-diff": "0.43.0",
     "go-to-line": "0.26.0",
     "grammar-selector": "0.37.0",
     "image-view": "0.40.0",
     "incompatible-packages": "0.10.0",
     "keybinding-resolver": "0.20.0",
     "link": "0.26.0",
-    "markdown-preview": "0.107.0",
-    "metrics": "0.36.0",
+    "markdown-preview": "0.110.0",
+    "metrics": "0.38.0",
     "open-on-github": "0.30.0",
-    "package-generator": "0.31.0",
+    "package-generator": "0.32.0",
     "release-notes": "0.36.0",
-    "settings-view": "0.154.0",
+    "settings-view": "0.160.0",
     "snippets": "0.56.0",
     "spell-check": "0.43.0",
     "status-bar": "0.46.0",
     "styleguide": "0.30.0",
-    "symbols-view": "0.66.0",
-    "tabs": "0.55.0",
+    "symbols-view": "0.68.0",
+    "tabs": "0.56.0",
     "timecop": "0.23.0",
-    "tree-view": "0.131.0",
+    "tree-view": "0.132.0",
     "update-package-dependencies": "0.6.0",
     "welcome": "0.19.0",
     "whitespace": "0.26.0",
-    "wrap-guide": "0.23.0",
-    "language-c": "0.29.0",
+    "wrap-guide": "0.24.0",
+    "language-c": "0.31.0",
     "language-coffee-script": "0.37.0",
-    "language-css": "0.21.0",
+    "language-css": "0.23.0",
     "language-gfm": "0.53.0",
     "language-git": "0.9.0",
     "language-go": "0.19.0",
     "language-html": "0.26.0",
     "language-hyperlink": "0.12.0",
     "language-java": "0.11.0",
-    "language-javascript": "0.42.0",
+    "language-javascript": "0.43.0",
     "language-json": "0.8.0",
     "language-less": "0.18.0",
     "language-make": "0.12.0",
     "language-mustache": "0.10.0",
     "language-objective-c": "0.11.0",
     "language-perl": "0.9.0",
-    "language-php": "0.17.0",
+    "language-php": "0.18.0",
     "language-property-list": "0.7.0",
-    "language-python": "0.21.0",
+    "language-python": "0.23.0",
     "language-ruby": "0.41.0",
     "language-ruby-on-rails": "0.18.0",
-    "language-sass": "0.24.0",
-    "language-shellscript": "0.8.0",
+    "language-sass": "0.25.0",
+    "language-shellscript": "0.10.0",
     "language-source": "0.8.0",
     "language-sql": "0.11.0",
     "language-text": "0.6.0",

resources/linux/debian/control.in

@@ -1,6 +1,7 @@
 Package: <%= name %>
 Version: <%= version %>
-Depends: python (>= 2.6), libc6
+Depends: gconf2, gconf-service, libgtk2.0-0, libudev0 | libudev1, libgcrypt11, libnotify4, libxtst6, libnss3, python, gvfs-bin, xdg-utils
+Suggests: libgnome-keyring0, gir1.2-gnomekeyring-1.0
 Section: <%= section %>
 Priority: optional
 Architecture: <%= arch %>

resources/linux/redhat/atom.spec.in

@@ -4,9 +4,6 @@ Release:        0.1%{?dist}
 Summary:        Atom is a hackable text editor for the 21st century
 License:        MIT
 URL:            https://atom.io/
-BuildConflicts: gyp
-BuildRequires:  make, gcc, gcc-c++, glibc-devel, git-core, libgnome-keyring-devel
-Requires:       libgnome-keyring
 AutoReqProv:    no # Avoid libchromiumcontent.so missing dependency
 
 %description

script/utils/child-process-wrapper.js

@@ -34,6 +34,9 @@ exports.safeSpawn = function(command, args, options, callback) {
   var child = childProcess.spawn(command, args, options);
   child.stderr.pipe(process.stderr);
   child.stdout.pipe(process.stdout);
+  child.on('error', function(error) {
+    console.error('Command \'' + command + '\' failed: ' + error.message);
+  });
   child.on('exit', function(code) {
     if (code != 0)
       process.exit(code);

spec/atom-spec.coffee

@@ -6,7 +6,7 @@ ThemeManager = require '../src/theme-manager'
 
 describe "the `atom` global", ->
   beforeEach ->
-    atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+    atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
 
   describe 'window sizing methods', ->
     describe '::getPosition and ::setPosition', ->

spec/command-registry-spec.coffee

@@ -1,4 +1,5 @@
 CommandRegistry = require '../src/command-registry'
+_ = require 'underscore-plus'
 
 describe "CommandRegistry", ->
   [registry, parent, child, grandchild] = []
@@ -154,8 +155,15 @@ describe "CommandRegistry", ->
       registry.add '.grandchild', 'namespace:command-3', ->
       registry.add '.grandchild.no-match', 'namespace:command-4', ->
 
-      expect(registry.findCommands(target: grandchild)[0..2]).toEqual [
+      registry.add grandchild, 'namespace:inline-command-1', ->
+      registry.add child, 'namespace:inline-command-2', ->
+
+      commands = registry.findCommands(target: grandchild)
+      nonJqueryCommands = _.reject commands, (cmd) -> cmd.jQuery
+      expect(nonJqueryCommands).toEqual [
+        {name: 'namespace:inline-command-1', displayName: 'Namespace: Inline Command 1'}
         {name: 'namespace:command-3', displayName: 'Namespace: Command 3'}
+        {name: 'namespace:inline-command-2', displayName: 'Namespace: Inline Command 2'}
         {name: 'namespace:command-2', displayName: 'Namespace: Command 2'}
         {name: 'namespace:command-1', displayName: 'Namespace: Command 1'}
       ]

spec/config-spec.coffee

@@ -195,6 +195,52 @@ describe "Config", ->
         atom.config.restoreDefault('.source.coffee', 'foo.bar.baz')
         expect(atom.config.save.callCount).toBe 1
 
+      it "does not call ::save or add a scoped property when no value has been set", ->
+        # see https://github.com/atom/atom/issues/4175
+        atom.config.setDefaults("foo", bar: baz: 10)
+        atom.config.restoreDefault('.source.coffee', 'foo.bar.baz')
+        expect(atom.config.get(['.source.coffee'], 'foo.bar.baz')).toBe 10
+
+        expect(atom.config.save).not.toHaveBeenCalled()
+
+        scopedProperties = atom.config.scopedSettingsStore.propertiesForSource('user-config')
+        expect(scopedProperties['.coffee.source']).toBeUndefined()
+
+      it "removes the scoped value when it was the only set value on the object", ->
+        spyOn(CSON, 'writeFileSync')
+        jasmine.unspy atom.config, 'save'
+
+        atom.config.setDefaults("foo", bar: baz: 10)
+        atom.config.set('.source.coffee', 'foo.bar.baz', 55)
+        atom.config.set('.source.coffee', 'foo.bar.zfoo', 20)
+        CSON.writeFileSync.reset()
+        expect(atom.config.get(['.source.coffee'], 'foo.bar.baz')).toBe 55
+
+        atom.config.restoreDefault('.source.coffee', 'foo.bar.baz')
+        expect(atom.config.get(['.source.coffee'], 'foo.bar.baz')).toBe 10
+        expect(atom.config.get(['.source.coffee'], 'foo.bar.zfoo')).toBe 20
+        expect(CSON.writeFileSync).toHaveBeenCalled()
+        properties = CSON.writeFileSync.mostRecentCall.args[1]
+        expect(properties['.coffee.source']).toEqual
+          foo:
+            bar:
+              zfoo: 20
+
+        CSON.writeFileSync.reset()
+        atom.config.restoreDefault('.source.coffee', 'foo.bar.zfoo')
+        expect(CSON.writeFileSync).toHaveBeenCalled()
+        properties = CSON.writeFileSync.mostRecentCall.args[1]
+        expect(properties['.coffee.source']).toBeUndefined()
+
+      it "does not call ::save when the value is already at the default", ->
+        atom.config.setDefaults("foo", bar: baz: 10)
+        atom.config.set('.source.coffee', 'foo.bar.baz', 55)
+        atom.config.save.reset()
+
+        atom.config.restoreDefault('.source.coffee', 'foo.bar.ok')
+        expect(atom.config.save).not.toHaveBeenCalled()
+        expect(atom.config.get(['.source.coffee'], 'foo.bar.baz')).toBe 55
+
   describe ".getSettings()", ->
     it "returns all settings including defaults", ->
       atom.config.setDefaults("foo", bar: baz: 10)

spec/fixtures/packages/package-with-stylesheets/stylesheets/4.css

@@ -0,0 +1 @@
+a { color: red }

spec/language-mode-spec.coffee

@@ -96,12 +96,13 @@ describe "LanguageMode", ->
         buffer.setText("//this is a single line comment")
         expect(languageMode.rowRangeForCommentAtBufferRow(0)).toBeUndefined()
 
-    describe "suggestedIndentForBufferRow", ->
-      it "returns the suggested indentation based on auto-indent/outdent rules", ->
+    describe ".suggestedIndentForBufferRow", ->
+      it "bases indentation off of the previous non-blank line", ->
         expect(languageMode.suggestedIndentForBufferRow(0)).toBe 0
         expect(languageMode.suggestedIndentForBufferRow(1)).toBe 1
         expect(languageMode.suggestedIndentForBufferRow(2)).toBe 2
         expect(languageMode.suggestedIndentForBufferRow(9)).toBe 1
+        expect(languageMode.suggestedIndentForBufferRow(11)).toBe 1
 
     describe "rowRangeForParagraphAtBufferRow", ->
       describe "with code and comments", ->

spec/package-manager-spec.coffee

@@ -3,7 +3,7 @@ Package = require '../src/package'
 
 describe "PackageManager", ->
   beforeEach ->
-    atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+    atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
 
   describe "::loadPackage(name)", ->
     it "continues if the package has an invalid package.json", ->
@@ -48,9 +48,10 @@ describe "PackageManager", ->
       describe "when called multiple times", ->
         it "it only calls activate on the package once", ->
           spyOn(Package.prototype, 'activateNow').andCallThrough()
-          atom.packages.activatePackage('package-with-index')
-          atom.packages.activatePackage('package-with-index')
-
+          waitsForPromise ->
+            atom.packages.activatePackage('package-with-index')
+          waitsForPromise ->
+            atom.packages.activatePackage('package-with-index')
           waitsForPromise ->
             atom.packages.activatePackage('package-with-index')
 
@@ -182,8 +183,10 @@ describe "PackageManager", ->
           pack.mainModule.someNumber = 77
           atom.packages.deactivatePackage("package-with-serialization")
           spyOn(pack.mainModule, 'activate').andCallThrough()
-          atom.packages.activatePackage("package-with-serialization")
-          expect(pack.mainModule.activate).toHaveBeenCalledWith({someNumber: 77})
+          waitsForPromise ->
+            atom.packages.activatePackage("package-with-serialization")
+          runs ->
+            expect(pack.mainModule.activate).toHaveBeenCalledWith({someNumber: 77})
 
       it "logs warning instead of throwing an exception if the package fails to load", ->
         atom.config.set("core.disabledPackages", [])
@@ -202,11 +205,13 @@ describe "PackageManager", ->
             expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element2[0])).toHaveLength 0
             expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element3[0])).toHaveLength 0
 
-            atom.packages.activatePackage("package-with-keymaps")
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-keymaps")
 
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element1[0])[0].command).toBe "test-1"
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element2[0])[0].command).toBe "test-2"
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element3[0])).toHaveLength 0
+            runs ->
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element1[0])[0].command).toBe "test-1"
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element2[0])[0].command).toBe "test-2"
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element3[0])).toHaveLength 0
 
         describe "when the metadata contains a 'keymaps' manifest", ->
           it "loads only the keymaps specified by the manifest, in the specified order", ->
@@ -215,11 +220,13 @@ describe "PackageManager", ->
 
             expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element1[0])).toHaveLength 0
 
-            atom.packages.activatePackage("package-with-keymaps-manifest")
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-keymaps-manifest")
 
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element1[0])[0].command).toBe 'keymap-1'
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-n', target:element1[0])[0].command).toBe 'keymap-2'
-            expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-y', target:element3[0])).toHaveLength 0
+            runs ->
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-z', target:element1[0])[0].command).toBe 'keymap-1'
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-n', target:element1[0])[0].command).toBe 'keymap-2'
+              expect(atom.keymaps.findKeyBindings(keystrokes:'ctrl-y', target:element3[0])).toHaveLength 0
 
       describe "menu loading", ->
         beforeEach ->
@@ -232,14 +239,16 @@ describe "PackageManager", ->
 
             expect(atom.contextMenu.templateForElement(element)).toEqual []
 
-            atom.packages.activatePackage("package-with-menus")
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-menus")
 
-            expect(atom.menu.template.length).toBe 2
-            expect(atom.menu.template[0].label).toBe "Second to Last"
-            expect(atom.menu.template[1].label).toBe "Last"
-            expect(atom.contextMenu.templateForElement(element)[0].label).toBe "Menu item 1"
-            expect(atom.contextMenu.templateForElement(element)[1].label).toBe "Menu item 2"
-            expect(atom.contextMenu.templateForElement(element)[2].label).toBe "Menu item 3"
+            runs ->
+              expect(atom.menu.template.length).toBe 2
+              expect(atom.menu.template[0].label).toBe "Second to Last"
+              expect(atom.menu.template[1].label).toBe "Last"
+              expect(atom.contextMenu.templateForElement(element)[0].label).toBe "Menu item 1"
+              expect(atom.contextMenu.templateForElement(element)[1].label).toBe "Menu item 2"
+              expect(atom.contextMenu.templateForElement(element)[2].label).toBe "Menu item 3"
 
         describe "when the metadata contains a 'menus' manifest", ->
           it "loads only the menus specified by the manifest, in the specified order", ->
@@ -247,13 +256,15 @@ describe "PackageManager", ->
 
             expect(atom.contextMenu.templateForElement(element)).toEqual []
 
-            atom.packages.activatePackage("package-with-menus-manifest")
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-menus-manifest")
 
-            expect(atom.menu.template[0].label).toBe "Second to Last"
-            expect(atom.menu.template[1].label).toBe "Last"
-            expect(atom.contextMenu.templateForElement(element)[0].label).toBe "Menu item 2"
-            expect(atom.contextMenu.templateForElement(element)[1].label).toBe "Menu item 1"
-            expect(atom.contextMenu.templateForElement(element)[2]).toBeUndefined()
+            runs ->
+              expect(atom.menu.template[0].label).toBe "Second to Last"
+              expect(atom.menu.template[1].label).toBe "Last"
+              expect(atom.contextMenu.templateForElement(element)[0].label).toBe "Menu item 2"
+              expect(atom.contextMenu.templateForElement(element)[1].label).toBe "Menu item 1"
+              expect(atom.contextMenu.templateForElement(element)[2]).toBeUndefined()
 
       describe "stylesheet loading", ->
         describe "when the metadata contains a 'stylesheets' manifest", ->
@@ -270,33 +281,67 @@ describe "PackageManager", ->
             expect(atom.themes.stylesheetElementForId(two)).toBeNull()
             expect(atom.themes.stylesheetElementForId(three)).toBeNull()
 
-            atom.packages.activatePackage("package-with-stylesheets-manifest")
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-stylesheets-manifest")
 
-            expect(atom.themes.stylesheetElementForId(one)).not.toBeNull()
-            expect(atom.themes.stylesheetElementForId(two)).not.toBeNull()
-            expect(atom.themes.stylesheetElementForId(three)).toBeNull()
-            expect($('#jasmine-content').css('font-size')).toBe '1px'
+            runs ->
+              expect(atom.themes.stylesheetElementForId(one)).not.toBeNull()
+              expect(atom.themes.stylesheetElementForId(two)).not.toBeNull()
+              expect(atom.themes.stylesheetElementForId(three)).toBeNull()
+              expect($('#jasmine-content').css('font-size')).toBe '1px'
 
         describe "when the metadata does not contain a 'stylesheets' manifest", ->
           it "loads all stylesheets from the stylesheets directory", ->
             one = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/1.css")
             two = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/2.less")
-            three = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/3.css")
-
+            three = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/3.test-context.css")
+            four = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/4.css")
 
             one = atom.themes.stringToId(one)
             two = atom.themes.stringToId(two)
             three = atom.themes.stringToId(three)
+            four = atom.themes.stringToId(four)
 
             expect(atom.themes.stylesheetElementForId(one)).toBeNull()
             expect(atom.themes.stylesheetElementForId(two)).toBeNull()
             expect(atom.themes.stylesheetElementForId(three)).toBeNull()
+            expect(atom.themes.stylesheetElementForId(four)).toBeNull()
 
+            waitsForPromise ->
+              atom.packages.activatePackage("package-with-stylesheets")
+
+            runs ->
+              expect(atom.themes.stylesheetElementForId(one)).not.toBeNull()
+              expect(atom.themes.stylesheetElementForId(two)).not.toBeNull()
+              expect(atom.themes.stylesheetElementForId(three)).not.toBeNull()
+              expect(atom.themes.stylesheetElementForId(four)).not.toBeNull()
+              expect($('#jasmine-content').css('font-size')).toBe '3px'
+
+        it "assigns the stylesheet's context based on the filename", ->
+          waitsForPromise ->
             atom.packages.activatePackage("package-with-stylesheets")
-            expect(atom.themes.stylesheetElementForId(one)).not.toBeNull()
-            expect(atom.themes.stylesheetElementForId(two)).not.toBeNull()
-            expect(atom.themes.stylesheetElementForId(three)).not.toBeNull()
-            expect($('#jasmine-content').css('font-size')).toBe '3px'
+
+          runs ->
+            count = 0
+
+            for styleElement in atom.styles.getStyleElements()
+              if styleElement.sourcePath.match /1.css/
+                expect(styleElement.context).toBe undefined
+                count++
+
+              if styleElement.sourcePath.match /2.less/
+                expect(styleElement.context).toBe undefined
+                count++
+
+              if styleElement.sourcePath.match /3.test-context.css/
+                expect(styleElement.context).toBe 'test-context'
+                count++
+
+              if styleElement.sourcePath.match /4.css/
+                expect(styleElement.context).toBe undefined
+                count++
+
+            expect(count).toBe 4
 
       describe "grammar loading", ->
         it "loads the package's grammars", ->

spec/package-spec.coffee

@@ -92,7 +92,7 @@ describe "Package", ->
 
       it "reloads without readding to the stylesheets list", ->
         expect(theme.getStylesheetPaths().length).toBe 3
-        theme.reloadStylesheet(theme.getStylesheetPaths()[0])
+        theme.reloadStylesheets()
         expect(theme.getStylesheetPaths().length).toBe 3
 
     describe "events", ->

spec/pane-container-spec.coffee

@@ -33,6 +33,13 @@ describe "PaneContainer", ->
       [pane1B, pane2B, pane3B] = containerB.getPanes()
       expect(containerB.getActivePane()).toBe pane3B
 
+    it "makes the first pane active if no pane exists for the activePaneId", ->
+      pane3A.activate()
+      state = containerA.serialize()
+      state.activePaneId = -22
+      containerB = atom.deserializers.deserialize(state)
+      expect(containerB.getActivePane()).toBe containerB.getPanes()[0]
+
   it "does not allow the root pane to be destroyed", ->
     container = new PaneContainer
     container.getRoot().destroy()

spec/pane-container-view-spec.coffee

@@ -19,7 +19,7 @@ describe "PaneContainerView", ->
       save: -> @saved = true
       isEqual: (other) -> @name is other?.name
 
-    container = atom.workspace.getView(atom.workspace.paneContainer).__spacePenView
+    container = atom.views.getView(atom.workspace.paneContainer).__spacePenView
     pane1 = container.getRoot()
     pane1.activateItem(new TestView('1'))
     pane2 = pane1.splitRight(new TestView('2'))
@@ -73,7 +73,7 @@ describe "PaneContainerView", ->
 
   describe "serialization", ->
     it "can be serialized and deserialized, and correctly adjusts dimensions of deserialized panes after attach", ->
-      newContainer = atom.workspace.getView(container.model.testSerialization()).__spacePenView
+      newContainer = atom.views.getView(container.model.testSerialization()).__spacePenView
       expect(newContainer.find('atom-pane-axis.horizontal > :contains(1)')).toExist()
       expect(newContainer.find('atom-pane-axis.horizontal > atom-pane-axis.vertical > :contains(2)')).toExist()
       expect(newContainer.find('atom-pane-axis.horizontal > atom-pane-axis.vertical > :contains(3)')).toExist()
@@ -89,14 +89,14 @@ describe "PaneContainerView", ->
 
       describe "if the 'core.destroyEmptyPanes' config option is false (the default)", ->
         it "leaves the empty panes intact", ->
-          newContainer = atom.workspace.getView(container.model.testSerialization()).__spacePenView
+          newContainer = atom.views.getView(container.model.testSerialization()).__spacePenView
           expect(newContainer.find('atom-pane-axis.horizontal > :contains(1)')).toExist()
           expect(newContainer.find('atom-pane-axis.horizontal > atom-pane-axis.vertical > atom-pane').length).toBe 2
 
       describe "if the 'core.destroyEmptyPanes' config option is true", ->
         it "removes empty panes on deserialization", ->
           atom.config.set('core.destroyEmptyPanes', true)
-          newContainer = atom.workspace.getView(container.model.testSerialization()).__spacePenView
+          newContainer = atom.views.getView(container.model.testSerialization()).__spacePenView
           expect(newContainer.find('atom-pane-axis.horizontal, atom-pane-axis.vertical')).not.toExist()
           expect(newContainer.find('> :contains(1)')).toExist()
 
@@ -109,7 +109,7 @@ describe "PaneContainerView", ->
       item2b = new TestView('2b')
       item3a = new TestView('3a')
 
-      container = atom.workspace.getView(new PaneContainer).__spacePenView
+      container = atom.views.getView(new PaneContainer).__spacePenView
       pane1 = container.getRoot()
       pane1.activateItem(item1a)
       container.attachToDom()
@@ -259,7 +259,7 @@ describe "PaneContainerView", ->
       # |7|8|9|
       # -------
 
-      container = atom.workspace.getView(new PaneContainer).__spacePenView
+      container = atom.views.getView(new PaneContainer).__spacePenView
       pane1 = container.getRoot()
       pane1.activateItem(new TestView('1'))
       pane4 = pane1.splitDown(new TestView('4'))

spec/pane-spec.coffee

@@ -146,6 +146,24 @@ describe "Pane", ->
       pane.activateNextItem()
       expect(pane.getActiveItem()).toBe item1
 
+  describe "::moveItemRight() and ::moveItemLeft()", ->
+    it "moves the active item to the right and left, without looping around at either end", ->
+      pane = new Pane(items: [new Item("A"), new Item("B"), new Item("C")])
+      [item1, item2, item3] = pane.getItems()
+
+      pane.activateItemAtIndex(0)
+      expect(pane.getActiveItem()).toBe item1
+      pane.moveItemLeft()
+      expect(pane.getItems()).toEqual [item1, item2, item3]
+      pane.moveItemRight()
+      expect(pane.getItems()).toEqual [item2, item1, item3]
+      pane.moveItemLeft()
+      expect(pane.getItems()).toEqual [item1, item2, item3]
+      pane.activateItemAtIndex(2)
+      expect(pane.getActiveItem()).toBe item3
+      pane.moveItemRight()
+      expect(pane.getItems()).toEqual [item1, item2, item3]
+
   describe "::activateItemAtIndex(index)", ->
     it "activates the item at the given index", ->
       pane = new Pane(items: [new Item("A"), new Item("B"), new Item("C")])
@@ -565,6 +583,37 @@ describe "Pane", ->
       expect(pane1.isActive()).toBe false
       expect(pane2.isActive()).toBe true
 
+  describe "::close()", ->
+    it "prompts to save unsaved items before destroying the pane", ->
+      pane = new Pane(items: [new Item("A"), new Item("B")])
+      [item1, item2] = pane.getItems()
+
+      item1.shouldPromptToSave = -> true
+      item1.getUri = -> "/test/path"
+      item1.save = jasmine.createSpy("save")
+
+      spyOn(atom, 'confirm').andReturn(0)
+      pane.close()
+
+      expect(atom.confirm).toHaveBeenCalled()
+      expect(item1.save).toHaveBeenCalled()
+      expect(pane.isDestroyed()).toBe true
+
+    it "does not destroy the pane if cancel is called", ->
+      pane = new Pane(items: [new Item("A"), new Item("B")])
+      [item1, item2] = pane.getItems()
+
+      item1.shouldPromptToSave = -> true
+      item1.getUri = -> "/test/path"
+      item1.save = jasmine.createSpy("save")
+
+      spyOn(atom, 'confirm').andReturn(1)
+      pane.close()
+
+      expect(atom.confirm).toHaveBeenCalled()
+      expect(item1.save).not.toHaveBeenCalled()
+      expect(pane.isDestroyed()).toBe false
+
   describe "::destroy()", ->
     [container, pane1, pane2] = []
 

spec/pane-view-spec.coffee

@@ -24,7 +24,7 @@ describe "PaneView", ->
 
   beforeEach ->
     deserializerDisposable = atom.deserializers.add(TestView)
-    container = atom.workspace.getView(new PaneContainer).__spacePenView
+    container = atom.views.getView(new PaneContainer).__spacePenView
     containerModel = container.model
     view1 = new TestView(id: 'view-1', text: 'View 1')
     view2 = new TestView(id: 'view-2', text: 'View 2')
@@ -144,12 +144,15 @@ describe "PaneView", ->
 
   describe "when an item is moved to another pane", ->
     it "detaches the item's view rather than removing it", ->
+      container.attachToDom()
+      expect(view1.is(':visible')).toBe true
       paneModel2 = paneModel.splitRight()
       view1.data('preservative', 1234)
       paneModel.moveItemToPane(view1, paneModel2, 1)
       expect(view1.data('preservative')).toBe 1234
       paneModel2.activateItemAtIndex(1)
       expect(view1.data('preservative')).toBe 1234
+      expect(view1.is(':visible')).toBe true
 
   describe "when the title of the active item changes", ->
     describe 'when there is no onDidChangeTitle method', ->
@@ -311,13 +314,13 @@ describe "PaneView", ->
       container.attachToDom()
       pane.focus()
 
-      container2 = atom.workspace.getView(container.model.testSerialization()).__spacePenView
+      container2 = atom.views.getView(container.model.testSerialization()).__spacePenView
       pane2 = container2.getRoot()
       container2.attachToDom()
       expect(pane2).toMatchSelector(':has(:focus)')
 
       $(document.activeElement).blur()
-      container3 = atom.workspace.getView(container.model.testSerialization()).__spacePenView
+      container3 = atom.views.getView(container.model.testSerialization()).__spacePenView
       pane3 = container3.getRoot()
       container3.attachToDom()
       expect(pane3).not.toMatchSelector(':has(:focus)')

spec/panel-container-element-spec.coffee

@@ -34,8 +34,8 @@ describe "PanelContainerElement", ->
     element = container.getView()
     jasmineContent.appendChild(element)
 
-  it 'has a location attribute with value from the model', ->
-    expect(element.getAttribute('location')).toBe 'left'
+  it 'has a location class with value from the model', ->
+    expect(element).toHaveClass 'left'
 
   it 'removes the element when the container is destroyed', ->
     expect(element.parentNode).toBe jasmineContent
@@ -43,21 +43,76 @@ describe "PanelContainerElement", ->
     expect(element.parentNode).not.toBe jasmineContent
 
   describe "adding and removing panels", ->
-    it "adds atom-panel elements when a new panel is added to the container; removes them when the panels are destroyed", ->
-      expect(element.childNodes.length).toBe 0
+    describe "when the container is at the left location", ->
+      it "adds atom-panel elements when a new panel is added to the container; removes them when the panels are destroyed", ->
+        expect(element.childNodes.length).toBe 0
 
-      panel1 = new Panel({viewRegistry, item: new TestPanelContainerItem(), location: 'left'})
+        panel1 = new Panel({viewRegistry, item: new TestPanelContainerItem()})
+        container.addPanel(panel1)
+        expect(element.childNodes.length).toBe 1
+        expect(element.childNodes[0]).toHaveClass 'left'
+
+        expect(element.childNodes[0].tagName).toBe 'ATOM-PANEL'
+
+        panel2 = new Panel({viewRegistry, item: new TestPanelContainerItem()})
+        container.addPanel(panel2)
+        expect(element.childNodes.length).toBe 2
+
+        expect(panel1.getView().style.display).not.toBe 'none'
+        expect(panel2.getView().style.display).not.toBe 'none'
+
+        panel1.destroy()
+        expect(element.childNodes.length).toBe 1
+
+        panel2.destroy()
+        expect(element.childNodes.length).toBe 0
+
+    describe "when the container is at the bottom location", ->
+      beforeEach ->
+        container = new PanelContainer({viewRegistry, location: 'bottom'})
+        element = container.getView()
+        jasmineContent.appendChild(element)
+
+      it "adds atom-panel elements when a new panel is added to the container; removes them when the panels are destroyed", ->
+        expect(element.childNodes.length).toBe 0
+
+        panel1 = new Panel({viewRegistry, item: new TestPanelContainerItem(), className: 'one'})
+        container.addPanel(panel1)
+        expect(element.childNodes.length).toBe 1
+        expect(element.childNodes[0]).toHaveClass 'bottom'
+        expect(element.childNodes[0].tagName).toBe 'ATOM-PANEL'
+        expect(panel1.getView()).toHaveClass 'one'
+
+        panel2 = new Panel({viewRegistry, item: new TestPanelContainerItem(), className: 'two'})
+        container.addPanel(panel2)
+        expect(element.childNodes.length).toBe 2
+        expect(panel2.getView()).toHaveClass 'two'
+
+        panel1.destroy()
+        expect(element.childNodes.length).toBe 1
+
+        panel2.destroy()
+        expect(element.childNodes.length).toBe 0
+
+  describe "when the container is modal", ->
+    beforeEach ->
+      container = new PanelContainer({viewRegistry, location: 'modal'})
+      element = container.getView()
+      jasmineContent.appendChild(element)
+
+    it "allows only one panel to be visible at a time", ->
+      panel1 = new Panel({viewRegistry, item: new TestPanelContainerItem()})
       container.addPanel(panel1)
-      expect(element.childNodes.length).toBe 1
 
-      expect(element.childNodes[0].tagName).toBe 'ATOM-PANEL'
+      expect(panel1.getView().style.display).not.toBe 'none'
 
-      panel2 = new Panel({viewRegistry, item: new TestPanelContainerItem(), location: 'left'})
+      panel2 = new Panel({viewRegistry, item: new TestPanelContainerItem()})
       container.addPanel(panel2)
-      expect(element.childNodes.length).toBe 2
 
-      panel1.destroy()
-      expect(element.childNodes.length).toBe 1
+      expect(panel1.getView().style.display).toBe 'none'
+      expect(panel2.getView().style.display).not.toBe 'none'
 
-      panel2.destroy()
-      expect(element.childNodes.length).toBe 0
+      panel1.show()
+
+      expect(panel1.getView().style.display).not.toBe 'none'
+      expect(panel2.getView().style.display).toBe 'none'

spec/panel-element-spec.coffee

@@ -54,3 +54,12 @@ describe "PanelElement", ->
 
       panel.show()
       expect(element.style.display).not.toBe 'none'
+
+  describe "when a class name is specified", ->
+    it 'initially renders panel created with visibile: false', ->
+      panel = new Panel({viewRegistry, className: 'some classes', item: new TestPanelItem})
+      element = panel.getView()
+      jasmineContent.appendChild(element)
+
+      expect(element).toHaveClass 'some'
+      expect(element).toHaveClass 'classes'

spec/select-list-view-spec.coffee

@@ -184,7 +184,7 @@ describe "SelectListView", ->
   describe "when the mini editor loses focus", ->
     it "triggers the cancelled hook and detaches the select list", ->
       spyOn(selectList, 'detach')
-      filterEditorView.hiddenInput.trigger 'focusout'
+      filterEditorView.trigger 'blur'
       expect(selectList.cancelled).toHaveBeenCalled()
       expect(selectList.detach).toHaveBeenCalled()
 

spec/spec-helper.coffee

@@ -106,6 +106,7 @@ beforeEach ->
   config.set "editor.autoIndent", false
   config.set "core.disabledPackages", ["package-that-throws-an-exception",
     "package-with-broken-package-json", "package-with-broken-keymap"]
+  config.set "editor.useShadowDOM", true
   config.load.reset()
   config.save.reset()
 
@@ -219,7 +220,7 @@ addCustomMatchers = (spec) ->
       @message = -> return "Expected element '" + @actual + "' or its descendants" + notText + " to have focus."
       element = @actual
       element = element.get(0) if element.jquery
-      element.webkitMatchesSelector(":focus") or element.querySelector(":focus")
+      element is document.activeElement or element.contains(document.activeElement)
 
     toShow: ->
       notText = if @isNot then " not" else ""
@@ -338,12 +339,8 @@ window.setEditorWidthInChars = (editorView, widthInChars, charWidth=editorView.c
   $(window).trigger 'resize' # update width of editor view's on-screen lines
 
 window.setEditorHeightInLines = (editorView, heightInLines, lineHeight=editorView.lineHeight) ->
-  if editorView.hasClass('react')
-    editorView.height(editorView.getEditor().getLineHeightInPixels() * heightInLines)
-    editorView.component?.measureHeightAndWidth()
-  else
-    editorView.height(lineHeight * heightInLines + editorView.renderedLines.position().top)
-    $(window).trigger 'resize' # update editor view's on-screen lines
+  editorView.height(editorView.getEditor().getLineHeightInPixels() * heightInLines)
+  editorView.component?.measureHeightAndWidth()
 
 $.fn.resultOfTrigger = (type) ->
   event = $.Event(type)

spec/styles-element-spec.coffee

@@ -52,3 +52,56 @@ describe "StylesElement", ->
     expect(element.children.length).toBe initialChildCount + 1
     expect(element.children[initialChildCount].textContent).toBe "a {color: blue;}"
     expect(updatedStyleElements).toEqual [element.children[initialChildCount]]
+
+  it "only includes style elements matching the 'context' attribute", ->
+    initialChildCount = element.children.length
+
+    atom.styles.addStyleSheet("a {color: red;}", context: 'test-context')
+    atom.styles.addStyleSheet("a {color: green;}")
+
+    expect(element.children.length).toBe initialChildCount + 2
+    expect(element.children[initialChildCount].textContent).toBe "a {color: red;}"
+    expect(element.children[initialChildCount + 1].textContent).toBe "a {color: green;}"
+
+    element.setAttribute('context', 'test-context')
+
+    expect(element.children.length).toBe 1
+    expect(element.children[0].textContent).toBe "a {color: red;}"
+
+    atom.styles.addStyleSheet("a {color: blue;}", context: 'test-context')
+    atom.styles.addStyleSheet("a {color: yellow;}")
+
+    expect(element.children.length).toBe 2
+    expect(element.children[0].textContent).toBe "a {color: red;}"
+    expect(element.children[1].textContent).toBe "a {color: blue;}"
+
+  describe "atom-text-editor shadow DOM selector upgrades", ->
+    beforeEach ->
+      element.setAttribute('context', 'atom-text-editor')
+      spyOn(console, 'warn')
+
+    it "upgrades selectors containing .editor-colors", ->
+      atom.styles.addStyleSheet(".editor-colors {background: black;}", context: 'atom-text-editor')
+      expect(element.firstChild.sheet.cssRules[0].selectorText).toBe ':host'
+
+    it "upgrades selectors containing .editor", ->
+      atom.styles.addStyleSheet """
+        .editor {background: black;}
+        .editor.mini {background: black;}
+        .editor:focus {background: black;}
+      """, context: 'atom-text-editor'
+
+      expect(element.firstChild.sheet.cssRules[0].selectorText).toBe ':host'
+      expect(element.firstChild.sheet.cssRules[1].selectorText).toBe ':host(.mini)'
+      expect(element.firstChild.sheet.cssRules[2].selectorText).toBe ':host(:focus)'
+
+    it "defers selector upgrade until the element is attached", ->
+      element = new StylesElement
+      element.setAttribute('context', 'atom-text-editor')
+      element.initialize()
+
+      atom.styles.addStyleSheet ".editor {background: black;}", context: 'atom-text-editor'
+      expect(element.firstChild.sheet).toBeNull()
+
+      document.querySelector('#jasmine-content').appendChild(element)
+      expect(element.firstChild.sheet.cssRules[0].selectorText).toBe ':host'

spec/text-editor-component-spec.coffee

@@ -721,11 +721,11 @@ describe "TextEditorComponent", ->
       editor.setCursorScreenPosition([0, 16])
       nextAnimationFrame()
 
-      atom.themes.applyStylesheet 'test', """
+      atom.styles.addStyleSheet """
         .function.js {
           font-weight: bold;
         }
-      """
+      """, context: 'atom-text-editor'
       nextAnimationFrame() # update based on new measurements
 
       cursor = componentNode.querySelector('.cursor')
@@ -1131,6 +1131,13 @@ describe "TextEditorComponent", ->
       regions = componentNode.querySelectorAll('.test-highlight .region')
       expect(regions.length).toBe 2
 
+    it "renders classes on the regions directly if 'deprecatedRegionClass' option is defined", ->
+      decoration = editor.decorateMarker(marker, type: 'highlight', class: 'test-highlight', deprecatedRegionClass: 'test-highlight-region')
+      nextAnimationFrame()
+
+      regions = componentNode.querySelectorAll('.test-highlight .region.test-highlight-region')
+      expect(regions.length).toBe 2
+
     describe "when flashing a decoration via Decoration::flash()", ->
       highlightNode = null
       beforeEach ->
@@ -1196,6 +1203,221 @@ describe "TextEditorComponent", ->
         expect(componentNode.querySelector('.test-highlight')).toBeFalsy()
         expect(componentNode.querySelector('.new-test-highlight')).toBeTruthy()
 
+  describe "overlay decoration rendering", ->
+    [item] = []
+    beforeEach ->
+      item = document.createElement('div')
+      item.classList.add 'overlay-test'
+
+    describe "when the marker is empty", ->
+      it "renders an overlay decoration when added and removes the overlay when the decoration is destroyed", ->
+        marker = editor.displayBuffer.markBufferRange([[2, 13], [2, 13]], invalidate: 'never')
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay .overlay-test')
+        expect(overlay).toBe item
+
+        decoration.destroy()
+        nextAnimationFrame()
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay .overlay-test')
+        expect(overlay).toBe null
+
+      it "renders in the correct position on initial display and when the marker moves", ->
+        editor.setCursorBufferPosition([2, 5])
+
+        marker = editor.getLastCursor().getMarker()
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([2, 5])
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+        editor.moveRight()
+        editor.moveRight()
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([2, 7])
+
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+    describe "when the marker is not empty", ->
+      it "renders at the head of the marker", ->
+        marker = editor.displayBuffer.markBufferRange([[2, 5], [2, 10]], invalidate: 'never')
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([2, 10])
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+      it "renders at the head of the marker when the marker is reversed", ->
+        marker = editor.displayBuffer.markBufferRange([[2, 5], [2, 10]], invalidate: 'never', reversed: true)
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([2, 5])
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+    describe "positioning the overlay when near the edge of the editor", ->
+      [itemWidth, itemHeight] = []
+      beforeEach ->
+        itemWidth = 4 * editor.getDefaultCharWidth()
+        itemHeight = 4 * editor.getLineHeightInPixels()
+
+        gutterWidth = componentNode.querySelector('.gutter').offsetWidth
+        windowWidth = gutterWidth + 30 * editor.getDefaultCharWidth()
+        windowHeight = 9 * editor.getLineHeightInPixels()
+
+        item.style.width = itemWidth + 'px'
+        item.style.height = itemHeight + 'px'
+
+        wrapperNode.style.width = windowWidth + 'px'
+        wrapperNode.style.height = windowHeight + 'px'
+
+        component.measureHeightAndWidth()
+        nextAnimationFrame()
+
+      it "flips horizontally when near the right edge", ->
+        marker = editor.displayBuffer.markBufferRange([[0, 26], [0, 26]], invalidate: 'never')
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([0, 26])
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+        editor.insertText('a')
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([0, 27])
+
+        expect(overlay.style.left).toBe position.left - itemWidth + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+      it "flips vertically when near the bottom edge", ->
+        marker = editor.displayBuffer.markBufferRange([[4, 0], [4, 0]], invalidate: 'never')
+        decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([4, 0])
+
+        overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+        editor.insertNewline()
+        nextAnimationFrame()
+
+        position = editor.pixelPositionForBufferPosition([5, 0])
+
+        expect(overlay.style.left).toBe position.left + 'px'
+        expect(overlay.style.top).toBe position.top - itemHeight + 'px'
+
+      describe "when the editor is very small", ->
+        beforeEach ->
+          gutterWidth = componentNode.querySelector('.gutter').offsetWidth
+          windowWidth = gutterWidth + 6 * editor.getDefaultCharWidth()
+          windowHeight = 6 * editor.getLineHeightInPixels()
+
+          wrapperNode.style.width = windowWidth + 'px'
+          wrapperNode.style.height = windowHeight + 'px'
+
+          component.measureHeightAndWidth()
+          nextAnimationFrame()
+
+        it "does not flip horizontally and force the overlay to have a negative left", ->
+          marker = editor.displayBuffer.markBufferRange([[0, 2], [0, 2]], invalidate: 'never')
+          decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([0, 2])
+
+          overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+          editor.insertText('a')
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([0, 3])
+
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+        it "does not flip vertically and force the overlay to have a negative top", ->
+          marker = editor.displayBuffer.markBufferRange([[1, 0], [1, 0]], invalidate: 'never')
+          decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([1, 0])
+
+          overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+          editor.insertNewline()
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([2, 0])
+
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+
+      describe "when editor scroll position is not 0", ->
+        it "flips horizontally when near the right edge", ->
+          editor.setScrollLeft(2 * editor.getDefaultCharWidth())
+          marker = editor.displayBuffer.markBufferRange([[0, 28], [0, 28]], invalidate: 'never')
+          decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([0, 28])
+
+          overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+          editor.insertText('a')
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([0, 29])
+
+          expect(overlay.style.left).toBe position.left - itemWidth + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+        it "flips vertically when near the bottom edge", ->
+          editor.setScrollTop(2 * editor.getLineHeightInPixels())
+          marker = editor.displayBuffer.markBufferRange([[6, 0], [6, 0]], invalidate: 'never')
+          decoration = editor.decorateMarker(marker, {type: 'overlay', item})
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([6, 0])
+
+          overlay = component.getTopmostDOMNode().querySelector('atom-overlay')
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top + editor.getLineHeightInPixels() + 'px'
+
+          editor.insertNewline()
+          nextAnimationFrame()
+
+          position = editor.pixelPositionForBufferPosition([7, 0])
+
+          expect(overlay.style.left).toBe position.left + 'px'
+          expect(overlay.style.top).toBe position.top - itemHeight + 'px'
+
   describe "hidden input field", ->
     it "renders the hidden input field at the position of the last cursor if the cursor is on screen and the editor is focused", ->
       editor.setVerticalScrollMargin(0)
@@ -1537,8 +1759,9 @@ describe "TextEditorComponent", ->
 
     it "transfers focus to the hidden input", ->
       expect(document.activeElement).toBe document.body
-      componentNode.focus()
-      expect(document.activeElement).toBe inputNode
+      wrapperNode.focus()
+      expect(document.activeElement).toBe wrapperNode
+      expect(wrapperNode.shadowRoot.activeElement).toBe inputNode
 
     it "adds the 'is-focused' class to the editor when the hidden input is focused", ->
       expect(document.activeElement).toBe document.body
@@ -1667,12 +1890,13 @@ describe "TextEditorComponent", ->
       component.measureHeightAndWidth()
       nextAnimationFrame()
 
-      atom.themes.applyStylesheet "test", """
+      atom.styles.addStyleSheet """
         ::-webkit-scrollbar {
           width: 8px;
           height: 8px;
         }
-      """
+      """, context: 'atom-text-editor'
+
       nextAnimationFrame()
 
       scrollbarCornerNode = componentNode.querySelector('.scrollbar-corner')
@@ -1922,6 +2146,31 @@ describe "TextEditorComponent", ->
       expect(nextAnimationFrame).toBe noAnimationFrame
       expect(editor.lineTextForBufferRow(0)).toBe 'var quicksort = function () {'
 
+    it "groups events that occur close together in time into single undo entries", ->
+      currentTime = 0
+      spyOn(Date, 'now').andCallFake -> currentTime
+
+      atom.config.set('editor.undoGroupingInterval', 100)
+
+      editor.setText("")
+      componentNode.dispatchEvent(buildTextInputEvent(data: 'x', target: inputNode))
+
+      currentTime += 99
+      componentNode.dispatchEvent(buildTextInputEvent(data: 'y', target: inputNode))
+
+      currentTime += 99
+      componentNode.dispatchEvent(new CustomEvent('editor:duplicate-lines', bubbles: true, cancelable: true))
+
+      currentTime += 100
+      componentNode.dispatchEvent(new CustomEvent('editor:duplicate-lines', bubbles: true, cancelable: true))
+      expect(editor.getText()).toBe "xy\nxy\nxy"
+
+      componentNode.dispatchEvent(new CustomEvent('core:undo', bubbles: true, cancelable: true))
+      expect(editor.getText()).toBe "xy\nxy"
+
+      componentNode.dispatchEvent(new CustomEvent('core:undo', bubbles: true, cancelable: true))
+      expect(editor.getText()).toBe ""
+
     describe "when IME composition is used to insert international characters", ->
       inputNode = null
 
@@ -2435,6 +2684,24 @@ describe "TextEditorComponent", ->
         expect(line1LeafNodes[0].classList.contains('indent-guide')).toBe false
         expect(line1LeafNodes[1].classList.contains('indent-guide')).toBe false
 
+  describe "middle mouse paste on Linux", ->
+    it "pastes the previously selected text", ->
+      atom.clipboard.write('')
+      component.listenForMiddleMousePaste()
+
+      editor.setCursorBufferPosition([10, 0])
+      componentNode.querySelector('.scroll-view').dispatchEvent(buildMouseEvent('mouseup', which: 2))
+
+      expect(atom.clipboard.read()).toBe ''
+      expect(editor.lineTextForBufferRow(10)).toBe ''
+
+      editor.setSelectedBufferRange([[1, 6], [1, 10]])
+      editor.setCursorBufferPosition([10, 0])
+      componentNode.querySelector('.scroll-view').dispatchEvent(buildMouseEvent('mouseup', which: 2))
+
+      expect(atom.clipboard.read()).toBe 'sort'
+      expect(editor.lineTextForBufferRow(10)).toBe 'sort'
+
   buildMouseEvent = (type, properties...) ->
     properties = extend({bubbles: true, cancelable: true}, properties...)
     properties.detail ?= 1

spec/text-editor-element-spec.coffee

@@ -1,4 +1,5 @@
 TextEditorElement = require '../src/text-editor-element'
+TextEditor = require '../src/text-editor'
 
 # The rest of text-editor-component-spec will be moved to this file when React
 # is eliminated. This covers only concerns related to the wrapper element for now
@@ -19,18 +20,81 @@ describe "TextEditorElement", ->
       element = jasmineContent.firstChild
       expect(element.getModel().getPlaceholderText()).toBe 'testing'
 
-  describe "::focus()", ->
-    it "transfers focus to the hidden text area and does not emit 'focusout' or 'blur' events", ->
+  describe "when the model is assigned", ->
+    it "adds the 'mini' attribute if .isMini() returns true on the model", ->
       element = new TextEditorElement
+      model = new TextEditor(mini: true)
+      element.setModel(model)
+      expect(element.hasAttribute('mini')).toBe true
+
+  describe "focus and blur handling", ->
+    describe "when the editor.useShadowDOM config option is true", ->
+      it "proxies focus/blur events to/from the hidden input inside the shadow root", ->
+        atom.config.set('editor.useShadowDOM', true)
+
+        element = new TextEditorElement
+        jasmineContent.appendChild(element)
+
+        blurCalled = false
+        element.addEventListener 'blur', -> blurCalled = true
+
+        element.focus()
+        expect(blurCalled).toBe false
+        expect(element.hasFocus()).toBe true
+        expect(document.activeElement).toBe element
+        expect(element.shadowRoot.activeElement).toBe element.shadowRoot.querySelector('input')
+
+        document.body.focus()
+        expect(blurCalled).toBe true
+
+    describe "when the editor.useShadowDOM config option is false", ->
+      it "proxies focus/blur events to/from the hidden input", ->
+        atom.config.set('editor.useShadowDOM', false)
+
+        element = new TextEditorElement
+        jasmineContent.appendChild(element)
+
+        blurCalled = false
+        element.addEventListener 'blur', -> blurCalled = true
+
+        element.focus()
+        expect(blurCalled).toBe false
+        expect(element.hasFocus()).toBe true
+        expect(document.activeElement).toBe element.querySelector('input')
+
+        document.body.focus()
+        expect(blurCalled).toBe true
+
+  describe "when the themes finish loading", ->
+    [themeReloadCallback, initialThemeLoadComplete, element] = []
+
+    beforeEach ->
+      themeReloadCallback = null
+      initialThemeLoadComplete = false
+
+      spyOn(atom.themes, 'isInitialLoadComplete').andCallFake ->
+        initialThemeLoadComplete
+      spyOn(atom.themes, 'onDidReloadAll').andCallFake (fn) ->
+        themeReloadCallback = fn
+
+      atom.config.set("editor.useShadowDOM", false)
+
+      element = new TextEditorElement()
+      element.style.height = '200px'
+      element.getModel().setText [0..20].join("\n")
+
+    it "re-renders the scrollbar", ->
       jasmineContent.appendChild(element)
 
-      focusoutCalled = false
-      element.addEventListener 'focusout', -> focusoutCalled = true
-      blurCalled = false
-      element.addEventListener 'blur', -> blurCalled = true
+      atom.styles.addStyleSheet """
+        ::-webkit-scrollbar {
+          width: 8px;
+        }
+      """
 
-      element.focus()
-      expect(focusoutCalled).toBe false
-      expect(blurCalled).toBe false
-      expect(element.hasFocus()).toBe true
-      expect(element.querySelector('input')).toBe document.activeElement
+      initialThemeLoadComplete = true
+      themeReloadCallback()
+
+      verticalScrollbarNode = element.querySelector(".vertical-scrollbar")
+      scrollbarWidth = verticalScrollbarNode.offsetWidth - verticalScrollbarNode.clientWidth
+      expect(scrollbarWidth).toEqual(8)

spec/text-editor-spec.coffee

@@ -98,12 +98,13 @@ describe "TextEditor", ->
       expect(editor2.isFoldedAtBufferRow(4)).not.toBe editor.isFoldedAtBufferRow(4)
 
   describe "config defaults", ->
-    it "uses the `editor.tabLength`, `editor.softWrap`, and `editor.softTabs` config values", ->
+    it "uses the `editor.tabLength`, `editor.softWrap`, and `editor.softTabs`, and `core.fileEncoding` config values", ->
       editor1 = null
       editor2 = null
       atom.config.set('editor.tabLength', 4)
       atom.config.set('editor.softWrap', true)
       atom.config.set('editor.softTabs', false)
+      atom.config.set('core.fileEncoding', 'utf16le')
 
       waitsForPromise ->
         atom.workspace.open('a').then (o) -> editor1 = o
@@ -112,10 +113,12 @@ describe "TextEditor", ->
         expect(editor1.getTabLength()).toBe 4
         expect(editor1.isSoftWrapped()).toBe true
         expect(editor1.getSoftTabs()).toBe false
+        expect(editor1.getEncoding()).toBe 'utf16le'
 
         atom.config.set('editor.tabLength', 8)
         atom.config.set('editor.softWrap', false)
         atom.config.set('editor.softTabs', true)
+        atom.config.set('core.fileEncoding', 'macroman')
 
       waitsForPromise ->
         atom.workspace.open('b').then (o) -> editor2 = o
@@ -124,6 +127,7 @@ describe "TextEditor", ->
         expect(editor2.getTabLength()).toBe 8
         expect(editor2.isSoftWrapped()).toBe false
         expect(editor2.getSoftTabs()).toBe true
+        expect(editor2.getEncoding()).toBe 'macroman'
 
   describe "title", ->
     describe ".getTitle()", ->
@@ -1158,6 +1162,21 @@ describe "TextEditor", ->
         editor.selectLinesContainingCursors()
         expect(editor.getSelectedBufferRange()).toEqual [[0,0], [2,0]]
 
+      it "autoscrolls to the selection", ->
+        editor.manageScrollPosition = true
+        editor.setLineHeightInPixels(10)
+        editor.setDefaultCharWidth(10)
+        editor.setHeight(50)
+        editor.setWidth(50)
+        editor.setHorizontalScrollbarHeight(0)
+        editor.setCursorScreenPosition([5, 6])
+
+        editor.scrollToTop()
+        expect(editor.getScrollTop()).toBe 0
+
+        editor.selectLinesContainingCursors()
+        expect(editor.getScrollBottom()).toBe (7 + editor.getVerticalScrollMargin()) * 10
+
     describe ".selectToBeginningOfWord()", ->
       it "selects text from cusor position to beginning of word", ->
         editor.setCursorScreenPosition [0,13]
@@ -1805,6 +1824,16 @@ describe "TextEditor", ->
           expect(willInsertSpy).toHaveBeenCalled()
           expect(didInsertSpy).not.toHaveBeenCalled()
 
+      describe "when the undo option is set to 'skip'", ->
+        beforeEach ->
+          editor.setSelectedBufferRange([[1, 2], [1, 2]])
+
+        it "does not undo the skipped operation", ->
+          range = editor.insertText('x')
+          range = editor.insertText('y', undo: 'skip')
+          editor.undo()
+          expect(buffer.lineForRow(1)).toBe '  yvar sort = function(items) {'
+
     describe ".insertNewline()", ->
       describe "when there is a single cursor", ->
         describe "when the cursor is at the beginning of a line", ->
@@ -2448,17 +2477,33 @@ describe "TextEditor", ->
           expect(editor.getCursorScreenPosition()).toEqual [0, editor.getTabLength() * 2]
 
     describe "clipboard operations", ->
-      beforeEach ->
-        editor.setSelectedBufferRanges([[[0, 4], [0, 13]], [[1, 6], [1, 10]]])
-
       describe ".cutSelectedText()", ->
         it "removes the selected text from the buffer and places it on the clipboard", ->
+          editor.setSelectedBufferRanges([[[0, 4], [0, 13]], [[1, 6], [1, 10]]])
           editor.cutSelectedText()
           expect(buffer.lineForRow(0)).toBe "var  = function () {"
           expect(buffer.lineForRow(1)).toBe "  var  = function(items) {"
-
           expect(clipboard.readText()).toBe 'quicksort\nsort'
 
+        describe "when no text is selected", ->
+          beforeEach ->
+            editor.setSelectedBufferRanges([
+              [[0, 0], [0, 0]],
+              [[5, 0], [5, 0]],
+            ])
+
+          it "cuts the lines on which there are cursors", ->
+            editor.cutSelectedText()
+            expect(buffer.getLineCount()).toBe(11)
+            expect(buffer.lineForRow(1)).toBe("    if (items.length <= 1) return items;")
+            expect(buffer.lineForRow(4)).toBe("      current < pivot ? left.push(current) : right.push(current);")
+            expect(atom.clipboard.read()).toEqual """
+              var quicksort = function () {
+
+                    current = items.shift();
+
+            """
+
       describe ".cutToEndOfLine()", ->
         describe "when soft wrap is on", ->
           it "cuts up to the end of the line", ->
@@ -2497,37 +2542,210 @@ describe "TextEditor", ->
           expect(buffer.lineForRow(1)).toBe "  var sort = function(items) {"
           expect(buffer.lineForRow(2)).toBe "    if (items.length <= 1) return items;"
           expect(clipboard.readText()).toBe 'quicksort\nsort\nitems'
-          expect(atom.clipboard.readWithMetadata().metadata.selections).toEqual([
-            'quicksort'
-            'sort'
-            'items'
-          ])
+          expect(atom.clipboard.read()).toEqual """
+            quicksort
+            sort
+            items
+          """
+
+        describe "when no text is selected", ->
+          beforeEach ->
+            editor.setSelectedBufferRanges([
+              [[1, 5], [1, 5]],
+              [[5, 8], [5, 8]]
+            ])
+
+          it "copies the lines on which there are cursors", ->
+            editor.copySelectedText()
+            expect(atom.clipboard.read()).toEqual([
+              "  var sort = function(items) {\n"
+              "      current = items.shift();\n"
+            ].join("\n"))
+            expect(editor.getSelectedBufferRanges()).toEqual([
+              [[1, 5], [1, 5]],
+              [[5, 8], [5, 8]]
+            ])
 
       describe ".pasteText()", ->
+        copyText = (text, {startColumn, textEditor}={}) ->
+          startColumn ?= 0
+          textEditor ?= editor
+          textEditor.setCursorBufferPosition([0, 0])
+          textEditor.insertText(text)
+          numberOfNewlines = text.match(/\n/g)?.length
+          endColumn = text.match(/[^\n]*$/)[0]?.length
+          textEditor.getLastSelection().setBufferRange([[0,startColumn], [numberOfNewlines,endColumn]])
+          textEditor.cutSelectedText()
+
         it "pastes text into the buffer", ->
+          editor.setSelectedBufferRanges([[[0, 4], [0, 13]], [[1, 6], [1, 10]]])
           atom.clipboard.write('first')
           editor.pasteText()
           expect(editor.lineTextForBufferRow(0)).toBe "var first = function () {"
           expect(editor.lineTextForBufferRow(1)).toBe "  var first = function(items) {"
 
-        describe 'when the clipboard has many selections', ->
-          it "pastes each selection separately into the buffer", ->
-            atom.clipboard.write('first\nsecond', {selections: ['first', 'second'] })
+        describe "when `autoIndentOnPaste` is true", ->
+          beforeEach ->
+            atom.config.set("editor.autoIndentOnPaste", true)
+
+          describe "when only whitespace precedes the cursor", ->
+            it "auto-indents the lines spanned by the pasted text", ->
+              atom.clipboard.write("console.log(x);\nconsole.log(y);\n")
+              editor.setCursorBufferPosition([5, 2])
+              editor.pasteText()
+              expect(editor.lineTextForBufferRow(5)).toBe("      console.log(x);")
+              expect(editor.lineTextForBufferRow(6)).toBe("      console.log(y);")
+
+          describe "when non-whitespace characters precede the cursor", ->
+            it "does not auto-indent the first line being pasted", ->
+              editor.setText """
+              if (x) {
+                  y();
+              }
+              """
+
+              atom.clipboard.write(" z();")
+              editor.setCursorBufferPosition([1, Infinity])
+              editor.pasteText()
+
+              console.log JSON.stringify(editor.lineTextForBufferRow(1))
+              expect(editor.lineTextForBufferRow(1)).toBe("    y(); z();")
+
+        describe "when `autoIndentOnPaste` is false and `normalizeIndentOnPaste` is true", ->
+          beforeEach ->
+            atom.config.set('editor.autoIndentOnPaste', false)
+            atom.config.set('editor.normalizeIndentOnPaste', true)
+
+          describe "when the inserted text contains no newlines", ->
+            it "does not adjust the indentation level of the text", ->
+              editor.setCursorBufferPosition([5, 2])
+              editor.insertText("foo", indentBasis: 5)
+              expect(editor.lineTextForBufferRow(5)).toBe "  foo    current = items.shift();"
+
+            it "does not adjust the whitespace if there are preceding characters", ->
+              copyText(" foo")
+              editor.setCursorBufferPosition([5, 30])
+              editor.pasteText()
+
+              expect(editor.lineTextForBufferRow(5)).toBe "      current = items.shift(); foo"
+
+          describe "when the inserted text contains newlines", ->
+            describe "when the cursor is preceded only by whitespace characters", ->
+              it "normalizes indented lines to each cursor's current indentation level", ->
+                editor.setSelectedBufferRanges([
+                  [[1,2], [3,0]],
+                  [[4,4], [6,0]]
+                ])
+                editor.copySelectedText()
+                expect(atom.clipboard.read()).toEqual """
+                  var sort = function(items) {
+                      if (items.length <= 1) return items;
+
+                  while(items.length > 0) {
+                        current = items.shift();
+
+                """
+
+                editor.setCursorBufferPosition([0,0])
+                editor.insertNewlineAbove()
+                editor.setSelectedBufferRanges([
+                  [[0,0], [0,0]],
+                  [[1,0], [1,0]]
+                ])
+                editor.pasteText()
+
+                expect(editor.lineTextForBufferRow(0)).toBe "var sort = function(items) {"
+                console.log JSON.stringify(editor.lineTextForBufferRow(1))
+                expect(editor.lineTextForBufferRow(1)).toBe "  if (items.length <= 1) return items;"
+                expect(editor.lineTextForBufferRow(2)).toBe ""
+                expect(editor.lineTextForBufferRow(3)).toBe "while(items.length > 0) {"
+                expect(editor.lineTextForBufferRow(4)).toBe "  current = items.shift();"
+
+            describe "when the cursor is preceded by non-whitespace characters", ->
+              it "normalizes the indentation level of all lines based on the level of the existing first line", ->
+                copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 0})
+                editor.setCursorBufferPosition([1, Infinity])
+                editor.pasteText()
+
+                expect(editor.lineTextForBufferRow(1)).toBe "  var sort = function(items) {while (true) {"
+                expect(editor.lineTextForBufferRow(2)).toBe "    foo();"
+                expect(editor.lineTextForBufferRow(3)).toBe "  }"
+                expect(editor.lineTextForBufferRow(4)).toBe ""
+
+          describe 'when scoped settings are used', ->
+            coffeeEditor = null
+            beforeEach ->
+              waitsForPromise ->
+                atom.packages.activatePackage('language-coffee-script')
+              waitsForPromise ->
+                atom.project.open('coffee.coffee', autoIndent: false).then (o) ->
+                  coffeeEditor = o
+
+              runs ->
+                atom.config.set('.source.js', 'editor.normalizeIndentOnPaste', true)
+                atom.config.set('.source.coffee', 'editor.normalizeIndentOnPaste', false)
+
+            afterEach: ->
+              atom.packages.deactivatePackages()
+              atom.packages.unloadPackages()
+
+            it "normalizes the indentation level based on scoped settings", ->
+              copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 2, textEditor: coffeeEditor})
+              coffeeEditor.setCursorBufferPosition([4, 4])
+              coffeeEditor.pasteText()
+              expect(coffeeEditor.lineTextForBufferRow(4)).toBe "      while (true) {"
+              expect(coffeeEditor.lineTextForBufferRow(5)).toBe "      foo();"
+              expect(coffeeEditor.lineTextForBufferRow(6)).toBe "    }"
+
+              copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 2})
+              editor.setCursorBufferPosition([3, 4])
+              editor.pasteText()
+              expect(editor.lineTextForBufferRow(3)).toBe "    while (true) {"
+              expect(editor.lineTextForBufferRow(4)).toBe "      foo();"
+              expect(editor.lineTextForBufferRow(5)).toBe "    }"
+
+        describe "when `autoIndentOnPaste` and `normalizeIndentOnPaste` are both false", ->
+          beforeEach ->
+            atom.config.set('editor.normalizeIndentOnPaste', false)
+            atom.config.set("editor.autoIndentOnPaste", false)
+
+          it "does not auto-indent the pasted text", ->
+            atom.clipboard.write("console.log(x);\nconsole.log(y);\n")
+            editor.setCursorBufferPosition([5, 0])
             editor.pasteText()
-            expect(editor.lineTextForBufferRow(0)).toBe "var first = function () {"
-            expect(editor.lineTextForBufferRow(1)).toBe "  var second = function(items) {"
+            expect(editor.lineTextForBufferRow(5)).toBe("console.log(x);")
+            expect(editor.lineTextForBufferRow(6)).toBe("console.log(y);")
+
+          it "does not normalize the indentation level of the text", ->
+            copyText("   function() {\nvar cool = 1;\n  }\n")
+            editor.setCursorBufferPosition([5, 2])
+            editor.pasteText()
+            expect(editor.lineTextForBufferRow(5)).toBe "     function() {"
+            expect(editor.lineTextForBufferRow(6)).toBe "var cool = 1;"
+            expect(editor.lineTextForBufferRow(7)).toBe "  }"
+
+        describe 'when the clipboard has many selections', ->
+          beforeEach ->
+            atom.config.set("editor.autoIndentOnPaste", false)
+            editor.setSelectedBufferRanges([[[0, 4], [0, 13]], [[1, 6], [1, 10]]])
+            editor.copySelectedText()
+
+          it "pastes each selection separately into the buffer", ->
+            editor.copySelectedText()
+            editor.moveRight()
+            editor.insertText("_")
+            editor.pasteText()
+            expect(editor.lineTextForBufferRow(0)).toBe "var quicksort_quicksort = function () {"
+            expect(editor.lineTextForBufferRow(1)).toBe "  var sort_sort = function(items) {"
 
           describe 'and the selections count does not match', ->
-            it "pastes the whole text into the buffer", ->
-              atom.clipboard.write('first\nsecond\nthird', {selections: ['first', 'second', 'third'] })
-              editor.pasteText()
-              expect(editor.lineTextForBufferRow(0)).toBe "var first"
-              expect(editor.lineTextForBufferRow(1)).toBe "second"
-              expect(editor.lineTextForBufferRow(2)).toBe "third = function () {"
+            beforeEach ->
+              editor.setSelectedBufferRanges([[[0, 4], [0, 13]]])
 
-              expect(editor.lineTextForBufferRow(3)).toBe "  var first"
-              expect(editor.lineTextForBufferRow(4)).toBe "second"
-              expect(editor.lineTextForBufferRow(5)).toBe "third = function(items) {"
+            it "pastes the whole text into the buffer", ->
+              editor.pasteText()
+              expect(editor.lineTextForBufferRow(0)).toBe "var quicksort"
+              expect(editor.lineTextForBufferRow(1)).toBe "sort = function () {"
 
     describe ".indentSelectedRows()", ->
       describe "when nothing is selected", ->
@@ -2658,6 +2876,18 @@ describe "TextEditor", ->
 
           expect(editor.getSelectedBufferRange()).toEqual [[0, 1], [3, 0]]
 
+    describe ".autoIndentSelectedRows", ->
+      it "auto-indents the selection", ->
+        editor.setCursorBufferPosition([2, 0])
+        editor.insertText("function() {\ninside=true\n}\n  i=1\n")
+        editor.getLastSelection().setBufferRange([[2,0], [6,0]])
+        editor.autoIndentSelectedRows()
+
+        expect(editor.lineTextForBufferRow(2)).toBe "    function() {"
+        expect(editor.lineTextForBufferRow(3)).toBe "      inside=true"
+        expect(editor.lineTextForBufferRow(4)).toBe "    }"
+        expect(editor.lineTextForBufferRow(5)).toBe "    i=1"
+
     describe ".toggleLineCommentsInSelection()", ->
       it "toggles comments on the selected lines", ->
         editor.setSelectedBufferRange([[4, 5], [7, 5]])
@@ -3100,6 +3330,11 @@ describe "TextEditor", ->
         expect(editor.getTabLength()).toBe 6
         expect(editor.tokenizedLineForScreenRow(5).tokens[0].firstNonWhitespaceIndex).toBe 6
 
+        changeHandler = jasmine.createSpy('changeHandler')
+        editor.onDidChange(changeHandler)
+        editor.setTabLength(6)
+        expect(changeHandler).not.toHaveBeenCalled()
+
       it 'retokenizes when the editor.tabLength setting is updated', ->
         expect(editor.getTabLength()).toBe 2
         expect(editor.tokenizedLineForScreenRow(5).tokens[0].firstNonWhitespaceIndex).toBe 2
@@ -3156,237 +3391,135 @@ describe "TextEditor", ->
         expect(editor.getGrammar()).toBe jsGrammar
         expect(editor.tokenizedLineForScreenRow(0).tokens.length).toBeGreaterThan 1
 
-  describe "auto-indent", ->
-    copyText = (text, {startColumn, textEditor}={}) ->
-      startColumn ?= 0
-      textEditor ?= editor
-      textEditor.setCursorBufferPosition([0, 0])
-      textEditor.insertText(text)
-      numberOfNewlines = text.match(/\n/g)?.length
-      endColumn = text.match(/[^\n]*$/)[0]?.length
-      textEditor.getLastSelection().setBufferRange([[0,startColumn], [numberOfNewlines,endColumn]])
-      textEditor.cutSelectedText()
-
-    describe "editor.autoIndent", ->
-      describe "when editor.autoIndent is false (default)", ->
-        describe "when `indent` is triggered", ->
-          it "does not auto-indent the line", ->
-            editor.setCursorBufferPosition([1, 30])
-            editor.insertText("\n ")
-            expect(editor.lineTextForBufferRow(2)).toBe " "
-
-            atom.config.set("editor.autoIndent", false)
-            editor.indent()
-            expect(editor.lineTextForBufferRow(2)).toBe "  "
-
-      describe "when editor.autoIndent is true", ->
-        beforeEach ->
-          atom.config.set("editor.autoIndent", true)
-
-        describe "when `indent` is triggered", ->
-          it "auto-indents the line", ->
-            editor.setCursorBufferPosition([1, 30])
-            editor.insertText("\n ")
-            expect(editor.lineTextForBufferRow(2)).toBe " "
-
-            atom.config.set("editor.autoIndent", true)
-            editor.indent()
-            expect(editor.lineTextForBufferRow(2)).toBe "    "
-
-        describe "when a newline is added", ->
-          describe "when the line preceding the newline adds a new level of indentation", ->
-            it "indents the newline to one additional level of indentation beyond the preceding line", ->
-              editor.setCursorBufferPosition([1, Infinity])
-              editor.insertText('\n')
-              expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
-
-          describe "when the line preceding the newline does't add a level of indentation", ->
-            it "indents the new line to the same level a as the preceding line", ->
-              editor.setCursorBufferPosition([5, 14])
-              editor.insertText('\n')
-              expect(editor.indentationForBufferRow(6)).toBe editor.indentationForBufferRow(5)
-
-          describe "when the line preceding the newline is a comment", ->
-            it "maintains the indent of the commented line", ->
-              editor.setCursorBufferPosition([0, 0])
-              editor.insertText('    //')
-              editor.setCursorBufferPosition([0, Infinity])
-              editor.insertText('\n')
-              expect(editor.indentationForBufferRow(1)).toBe 2
-
-          it "does not indent the line preceding the newline", ->
-            editor.setCursorBufferPosition([2, 0])
-            editor.insertText('  var this-line-should-be-indented-more\n')
-            expect(editor.indentationForBufferRow(1)).toBe 1
-
-            atom.config.set("editor.autoIndent", true)
-            editor.setCursorBufferPosition([2, Infinity])
-            editor.insertText('\n')
-            expect(editor.indentationForBufferRow(1)).toBe 1
-            expect(editor.indentationForBufferRow(2)).toBe 1
-
-          describe "when the cursor is before whitespace", ->
-            it "retains the whitespace following the cursor on the new line", ->
-              editor.setText("  var sort = function() {}")
-              editor.setCursorScreenPosition([0, 23])
-              editor.insertNewline()
-
-              expect(buffer.lineForRow(0)).toBe '  var sort = function()'
-              expect(buffer.lineForRow(1)).toBe '   {}'
-              expect(editor.getCursorScreenPosition()).toEqual [1, 2]
-
-        describe "when inserted text matches a decrease indent pattern", ->
-          describe "when the preceding line matches an increase indent pattern", ->
-            it "decreases the indentation to match that of the preceding line", ->
-              editor.setCursorBufferPosition([1, Infinity])
-              editor.insertText('\n')
-              expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
-              editor.insertText('}')
-              expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1)
-
-          describe "when the preceding line doesn't match an increase indent pattern", ->
-            it "decreases the indentation to be one level below that of the preceding line", ->
-              editor.setCursorBufferPosition([3, Infinity])
-              editor.insertText('\n    ')
-              expect(editor.indentationForBufferRow(4)).toBe editor.indentationForBufferRow(3)
-              editor.insertText('}')
-              expect(editor.indentationForBufferRow(4)).toBe editor.indentationForBufferRow(3) - 1
-
-            it "doesn't break when decreasing the indentation on a row that has no indentation", ->
-              editor.setCursorBufferPosition([12, Infinity])
-              editor.insertText("\n}; # too many closing brackets!")
-              expect(editor.lineTextForBufferRow(13)).toBe "}; # too many closing brackets!"
-
-        describe "when inserted text does not match a decrease indent pattern", ->
-          it "does not decrease the indentation", ->
-            editor.setCursorBufferPosition([12, 0])
-            editor.insertText('  ')
-            expect(editor.lineTextForBufferRow(12)).toBe '  };'
-            editor.insertText('\t\t')
-            expect(editor.lineTextForBufferRow(12)).toBe '  \t\t};'
-
-        describe "when the current line does not match a decrease indent pattern", ->
-          it "leaves the line unchanged", ->
-            editor.setCursorBufferPosition([2, 4])
-            expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
-            editor.insertText('foo')
-            expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
-
-      describe 'when scoped settings are used', ->
-        coffeeEditor = null
-        beforeEach ->
-          waitsForPromise ->
-            atom.packages.activatePackage('language-coffee-script')
-          waitsForPromise ->
-            atom.project.open('coffee.coffee', autoIndent: false).then (o) -> coffeeEditor = o
-
-          runs ->
-            atom.config.set('.source.js', 'editor.autoIndent', true)
-            atom.config.set('.source.coffee', 'editor.autoIndent', false)
-
-        afterEach: ->
-          atom.packages.deactivatePackages()
-          atom.packages.unloadPackages()
-
-        it "does not auto-indent the line for javascript files", ->
+  describe "editor.autoIndent", ->
+    describe "when editor.autoIndent is false (default)", ->
+      describe "when `indent` is triggered", ->
+        it "does not auto-indent the line", ->
           editor.setCursorBufferPosition([1, 30])
-          editor.insertText("\n")
+          editor.insertText("\n ")
+          expect(editor.lineTextForBufferRow(2)).toBe " "
+
+          atom.config.set("editor.autoIndent", false)
+          editor.indent()
+          expect(editor.lineTextForBufferRow(2)).toBe "  "
+
+    describe "when editor.autoIndent is true", ->
+      beforeEach ->
+        atom.config.set("editor.autoIndent", true)
+
+      describe "when `indent` is triggered", ->
+        it "auto-indents the line", ->
+          editor.setCursorBufferPosition([1, 30])
+          editor.insertText("\n ")
+          expect(editor.lineTextForBufferRow(2)).toBe " "
+
+          atom.config.set("editor.autoIndent", true)
+          editor.indent()
           expect(editor.lineTextForBufferRow(2)).toBe "    "
 
-          coffeeEditor.setCursorBufferPosition([1, 18])
-          coffeeEditor.insertText("\n")
-          expect(coffeeEditor.lineTextForBufferRow(2)).toBe ""
-
-    describe "editor.normalizeIndentOnPaste", ->
-      beforeEach ->
-        atom.config.set('editor.normalizeIndentOnPaste', true)
-
-      it "does not normalize the indentation level of the text when editor.normalizeIndentOnPaste is false", ->
-        copyText("   function() {\nvar cool = 1;\n  }\n")
-        atom.config.set('editor.normalizeIndentOnPaste', false)
-        editor.setCursorBufferPosition([5, 2])
-        editor.pasteText()
-        expect(editor.lineTextForBufferRow(5)).toBe "     function() {"
-        expect(editor.lineTextForBufferRow(6)).toBe "var cool = 1;"
-        expect(editor.lineTextForBufferRow(7)).toBe "  }"
-
-      describe "when the inserted text contains no newlines", ->
-        it "does not adjust the indentation level of the text", ->
-          editor.setCursorBufferPosition([5, 2])
-          editor.insertText("foo", indentBasis: 5)
-          expect(editor.lineTextForBufferRow(5)).toBe "  foo    current = items.shift();"
-
-        it "does not adjust the whitespace if there are preceding characters", ->
-          copyText(" foo")
-          editor.setCursorBufferPosition([5, 30])
-          editor.pasteText()
-
-          expect(editor.lineTextForBufferRow(5)).toBe "      current = items.shift(); foo"
-
-      describe "when the inserted text contains newlines", ->
-        describe "when the cursor is preceded only by whitespace characters", ->
-          it "normalizes indented lines to the cursor's current indentation level", ->
-            copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 2})
-            editor.setCursorBufferPosition([3, 4])
-            editor.pasteText()
-
-            expect(editor.lineTextForBufferRow(3)).toBe "    while (true) {"
-            expect(editor.lineTextForBufferRow(4)).toBe "      foo();"
-            expect(editor.lineTextForBufferRow(5)).toBe "    }"
-            expect(editor.lineTextForBufferRow(6)).toBe "var pivot = items.shift(), current, left = [], right = [];"
-
-        describe "when the cursor is preceded by non-whitespace characters", ->
-          it "normalizes the indentation level of all lines based on the level of the existing first line", ->
-            copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 0})
+      describe "when a newline is added", ->
+        describe "when the line preceding the newline adds a new level of indentation", ->
+          it "indents the newline to one additional level of indentation beyond the preceding line", ->
             editor.setCursorBufferPosition([1, Infinity])
-            editor.pasteText()
+            editor.insertText('\n')
+            expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
 
-            expect(editor.lineTextForBufferRow(1)).toBe "  var sort = function(items) {while (true) {"
-            expect(editor.lineTextForBufferRow(2)).toBe "    foo();"
-            expect(editor.lineTextForBufferRow(3)).toBe "  }"
-            expect(editor.lineTextForBufferRow(4)).toBe ""
+        describe "when the line preceding the newline does't add a level of indentation", ->
+          it "indents the new line to the same level a as the preceding line", ->
+            editor.setCursorBufferPosition([5, 14])
+            editor.insertText('\n')
+            expect(editor.indentationForBufferRow(6)).toBe editor.indentationForBufferRow(5)
 
-      describe 'when scoped settings are used', ->
-        coffeeEditor = null
-        beforeEach ->
-          waitsForPromise ->
-            atom.packages.activatePackage('language-coffee-script')
-          waitsForPromise ->
-            atom.project.open('coffee.coffee', autoIndent: false).then (o) -> coffeeEditor = o
+        describe "when the line preceding the newline is a comment", ->
+          it "maintains the indent of the commented line", ->
+            editor.setCursorBufferPosition([0, 0])
+            editor.insertText('    //')
+            editor.setCursorBufferPosition([0, Infinity])
+            editor.insertText('\n')
+            expect(editor.indentationForBufferRow(1)).toBe 2
 
-          runs ->
-            atom.config.set('.source.js', 'editor.normalizeIndentOnPaste', true)
-            atom.config.set('.source.coffee', 'editor.normalizeIndentOnPaste', false)
+        it "does not indent the line preceding the newline", ->
+          editor.setCursorBufferPosition([2, 0])
+          editor.insertText('  var this-line-should-be-indented-more\n')
+          expect(editor.indentationForBufferRow(1)).toBe 1
 
-        afterEach: ->
-          atom.packages.deactivatePackages()
-          atom.packages.unloadPackages()
+          atom.config.set("editor.autoIndent", true)
+          editor.setCursorBufferPosition([2, Infinity])
+          editor.insertText('\n')
+          expect(editor.indentationForBufferRow(1)).toBe 1
+          expect(editor.indentationForBufferRow(2)).toBe 1
 
-        it "normalizes the indentation level based on scoped settings", ->
-          copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 2, textEditor: coffeeEditor})
-          coffeeEditor.setCursorBufferPosition([4, 4])
-          coffeeEditor.pasteText()
-          expect(coffeeEditor.lineTextForBufferRow(4)).toBe "      while (true) {"
-          expect(coffeeEditor.lineTextForBufferRow(5)).toBe "      foo();"
-          expect(coffeeEditor.lineTextForBufferRow(6)).toBe "    }"
+        describe "when the cursor is before whitespace", ->
+          it "retains the whitespace following the cursor on the new line", ->
+            editor.setText("  var sort = function() {}")
+            editor.setCursorScreenPosition([0, 23])
+            editor.insertNewline()
 
-          copyText("    while (true) {\n      foo();\n    }\n", {startColumn: 2})
-          editor.setCursorBufferPosition([3, 4])
-          editor.pasteText()
-          expect(editor.lineTextForBufferRow(3)).toBe "    while (true) {"
-          expect(editor.lineTextForBufferRow(4)).toBe "      foo();"
-          expect(editor.lineTextForBufferRow(5)).toBe "    }"
+            expect(buffer.lineForRow(0)).toBe '  var sort = function()'
+            expect(buffer.lineForRow(1)).toBe '   {}'
+            expect(editor.getCursorScreenPosition()).toEqual [1, 2]
 
-    it "autoIndentSelectedRows auto-indents the selection", ->
-      editor.setCursorBufferPosition([2, 0])
-      editor.insertText("function() {\ninside=true\n}\n  i=1\n")
-      editor.getLastSelection().setBufferRange([[2,0], [6,0]])
-      editor.autoIndentSelectedRows()
+      describe "when inserted text matches a decrease indent pattern", ->
+        describe "when the preceding line matches an increase indent pattern", ->
+          it "decreases the indentation to match that of the preceding line", ->
+            editor.setCursorBufferPosition([1, Infinity])
+            editor.insertText('\n')
+            expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
+            editor.insertText('}')
+            expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1)
 
-      expect(editor.lineTextForBufferRow(2)).toBe "    function() {"
-      expect(editor.lineTextForBufferRow(3)).toBe "      inside=true"
-      expect(editor.lineTextForBufferRow(4)).toBe "    }"
-      expect(editor.lineTextForBufferRow(5)).toBe "    i=1"
+        describe "when the preceding line doesn't match an increase indent pattern", ->
+          it "decreases the indentation to be one level below that of the preceding line", ->
+            editor.setCursorBufferPosition([3, Infinity])
+            editor.insertText('\n    ')
+            expect(editor.indentationForBufferRow(4)).toBe editor.indentationForBufferRow(3)
+            editor.insertText('}')
+            expect(editor.indentationForBufferRow(4)).toBe editor.indentationForBufferRow(3) - 1
+
+          it "doesn't break when decreasing the indentation on a row that has no indentation", ->
+            editor.setCursorBufferPosition([12, Infinity])
+            editor.insertText("\n}; # too many closing brackets!")
+            expect(editor.lineTextForBufferRow(13)).toBe "}; # too many closing brackets!"
+
+      describe "when inserted text does not match a decrease indent pattern", ->
+        it "does not decrease the indentation", ->
+          editor.setCursorBufferPosition([12, 0])
+          editor.insertText('  ')
+          expect(editor.lineTextForBufferRow(12)).toBe '  };'
+          editor.insertText('\t\t')
+          expect(editor.lineTextForBufferRow(12)).toBe '  \t\t};'
+
+      describe "when the current line does not match a decrease indent pattern", ->
+        it "leaves the line unchanged", ->
+          editor.setCursorBufferPosition([2, 4])
+          expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
+          editor.insertText('foo')
+          expect(editor.indentationForBufferRow(2)).toBe editor.indentationForBufferRow(1) + 1
+
+    describe 'when scoped settings are used', ->
+      coffeeEditor = null
+      beforeEach ->
+        waitsForPromise ->
+          atom.packages.activatePackage('language-coffee-script')
+        waitsForPromise ->
+          atom.project.open('coffee.coffee', autoIndent: false).then (o) -> coffeeEditor = o
+
+        runs ->
+          atom.config.set('.source.js', 'editor.autoIndent', true)
+          atom.config.set('.source.coffee', 'editor.autoIndent', false)
+
+      afterEach: ->
+        atom.packages.deactivatePackages()
+        atom.packages.unloadPackages()
+
+      it "does not auto-indent the line for javascript files", ->
+        editor.setCursorBufferPosition([1, 30])
+        editor.insertText("\n")
+        expect(editor.lineTextForBufferRow(2)).toBe "    "
+
+        coffeeEditor.setCursorBufferPosition([1, 18])
+        coffeeEditor.insertText("\n")
+        expect(coffeeEditor.lineTextForBufferRow(2)).toBe ""
 
   describe "soft and hard tabs", ->
     afterEach ->
@@ -3408,6 +3541,19 @@ describe "TextEditor", ->
       runs ->
         expect(editor.softTabs).toBe false
 
+    it "uses hard tabs in Makefile files", ->
+      # FIXME remove once this is handled by a scoped setting in the
+      # language-make package
+
+      waitsForPromise ->
+        atom.packages.activatePackage('language-make')
+
+      waitsForPromise ->
+        atom.project.open('Makefile').then (o) -> editor = o
+
+      runs ->
+        expect(editor.softTabs).toBe false
+
   describe ".destroy()", ->
     it "destroys all markers associated with the edit session", ->
       expect(buffer.getMarkerCount()).toBeGreaterThan 0

spec/theme-manager-spec.coffee

@@ -85,7 +85,7 @@ describe "ThemeManager", ->
       runs ->
         reloadHandler.reset()
         expect($('style.theme')).toHaveLength 0
-        atom.config.set('core.themes', ['atom-dark-syntax'])
+        atom.config.set('core.themes', ['atom-dark-ui'])
 
       waitsFor ->
         reloadHandler.callCount == 1
@@ -93,8 +93,8 @@ describe "ThemeManager", ->
       runs ->
         reloadHandler.reset()
         expect($('style[group=theme]')).toHaveLength 2
-        expect($('style[group=theme]:eq(1)').attr('source-path')).toMatch /atom-dark-syntax/
-        atom.config.set('core.themes', ['atom-light-syntax', 'atom-dark-syntax'])
+        expect($('style[group=theme]:eq(0)').attr('source-path')).toMatch /atom-dark-ui/
+        atom.config.set('core.themes', ['atom-light-ui', 'atom-dark-ui'])
 
       waitsFor ->
         reloadHandler.callCount == 1
@@ -102,8 +102,8 @@ describe "ThemeManager", ->
       runs ->
         reloadHandler.reset()
         expect($('style[group=theme]')).toHaveLength 2
-        expect($('style[group=theme]:eq(0)').attr('source-path')).toMatch /atom-dark-syntax/
-        expect($('style[group=theme]:eq(1)').attr('source-path')).toMatch /atom-light-syntax/
+        expect($('style[group=theme]:eq(0)').attr('source-path')).toMatch /atom-dark-ui/
+        expect($('style[group=theme]:eq(1)').attr('source-path')).toMatch /atom-light-ui/
         atom.config.set('core.themes', [])
 
       waitsFor ->
@@ -208,7 +208,7 @@ describe "ThemeManager", ->
 
   describe "base stylesheet loading", ->
     beforeEach ->
-      atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+      atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
       atom.workspaceView.append $('<atom-text-editor>')
       atom.workspaceView.attachToDom()
 

spec/workspace-spec.coffee

@@ -492,3 +492,12 @@ describe "Workspace", ->
 
         expect(panel).toBeDefined()
         expect(addPanelSpy).toHaveBeenCalledWith({panel, index: 0})
+
+    describe '::addModalPanel(model)', ->
+      it 'adds a panel to the correct panel container', ->
+        atom.workspace.panelContainers.modal.onDidAddPanel addPanelSpy = jasmine.createSpy()
+        panel = atom.workspace.addModalPanel(item: new TestPanel())
+
+        expect(panel).toBeDefined()
+        expect(addPanelSpy).toHaveBeenCalledWith({panel, index: 0})
+        expect(panel.getClassName()).toBe 'overlay from-top' # the default

spec/workspace-view-spec.coffee

@@ -13,7 +13,7 @@ describe "WorkspaceView", ->
     atom.project.setPaths([atom.project.resolve('dir')])
     pathToOpen = atom.project.resolve('a')
     atom.workspace = new Workspace
-    atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+    atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
     atom.workspaceView.enableKeymap()
     atom.workspaceView.focus()
 
@@ -29,7 +29,7 @@ describe "WorkspaceView", ->
       atom.workspaceView.remove()
       atom.project = atom.deserializers.deserialize(projectState)
       atom.workspace = Workspace.deserialize(workspaceState)
-      atom.workspaceView = atom.workspace.getView(atom.workspace).__spacePenView
+      atom.workspaceView = atom.views.getView(atom.workspace).__spacePenView
       atom.workspaceView.attachToDom()
 
     describe "when the serialized WorkspaceView has an unsaved buffer", ->
@@ -274,15 +274,18 @@ describe "WorkspaceView", ->
   describe 'panel containers', ->
     workspaceElement = null
     beforeEach ->
-      workspaceElement = atom.workspace.getView(atom.workspace)
+      workspaceElement = atom.views.getView(atom.workspace)
 
     it 'inserts panel container elements in the correct places in the DOM', ->
-      leftContainer = workspaceElement.querySelector('atom-panel-container[location="left"]')
-      rightContainer = workspaceElement.querySelector('atom-panel-container[location="right"]')
+      leftContainer = workspaceElement.querySelector('atom-panel-container.left')
+      rightContainer = workspaceElement.querySelector('atom-panel-container.right')
       expect(leftContainer.nextSibling).toBe workspaceElement.verticalAxis
       expect(rightContainer.previousSibling).toBe workspaceElement.verticalAxis
 
-      topContainer = workspaceElement.querySelector('atom-panel-container[location="top"]')
-      bottomContainer = workspaceElement.querySelector('atom-panel-container[location="bottom"]')
+      topContainer = workspaceElement.querySelector('atom-panel-container.top')
+      bottomContainer = workspaceElement.querySelector('atom-panel-container.bottom')
       expect(topContainer.nextSibling).toBe workspaceElement.paneContainer
       expect(bottomContainer.previousSibling).toBe workspaceElement.paneContainer
+
+      modalContainer = workspaceElement.querySelector('atom-panel-container.modal')
+      expect(modalContainer.parentNode).toBe workspaceElement

src/atom.coffee

@@ -140,6 +140,9 @@ class Atom extends Model
   # Public: A {DeserializerManager} instance
   deserializers: null
 
+  # Public: A {ViewRegistry} instance
+  views: null
+
   # Public: A {Workspace} instance
   workspace: null
 
@@ -174,6 +177,7 @@ class Atom extends Model
       @executeJavaScriptInDevTools('InspectorFrontendAPI.showConsole()')
       @lastUncaughtError = Array::slice.call(arguments)
       @emit 'uncaught-error', arguments...
+      @emitter.emit 'did-throw-error', arguments...
 
     @unsubscribe()
     @setBodyPlatformClass()
@@ -182,6 +186,7 @@ class Atom extends Model
 
     Config = require './config'
     KeymapManager = require './keymap-extensions'
+    ViewRegistry = require './view-registry'
     CommandRegistry = require './command-registry'
     PackageManager = require './package-manager'
     Clipboard = require './clipboard'
@@ -209,6 +214,7 @@ class Atom extends Model
     @keymaps = new KeymapManager({configDirPath, resourcePath})
     @keymap = @keymaps # Deprecated
     @commands = new CommandRegistry
+    @views = new ViewRegistry
     @packages = new PackageManager({devMode, configDirPath, resourcePath, safeMode})
     @styles = new StyleManager
     document.head.appendChild(new StylesElement)
@@ -242,6 +248,15 @@ class Atom extends Model
   onDidBeep: (callback) ->
     @emitter.on 'did-beep', callback
 
+  # Extended: Invoke the given callback whenever there is an unhandled error.
+  #
+  # * `callback` {Function} to be called whenever there is an unhandled error
+  #   * `errorMessage` {String}
+  #
+  # Returns a {Disposable} on which `.dispose()` can be called to unsubscribe.
+  onDidThrowError: (callback) ->
+    @emitter.on 'did-throw-error', callback
+
   ###
   Section: Atom Details
   ###
@@ -488,7 +503,11 @@ class Atom extends Model
     @packages.activate()
     @keymaps.loadUserKeymap()
     @requireUserInitScript() unless safeMode
+
     @menu.update()
+    @subscribe @config.onDidChange 'core.autoHideMenuBar', ({newValue}) =>
+      @setAutoHideMenuBar(newValue)
+    @setAutoHideMenuBar(true) if @config.get('core.autoHideMenuBar')
 
     maximize = dimensions?.maximized and process.platform isnt 'darwin'
     @displayWindow({maximize})
@@ -597,7 +616,7 @@ class Atom extends Model
 
     startTime = Date.now()
     @workspace = Workspace.deserialize(@state.workspace) ? new Workspace
-    @workspaceView = @workspace.getView(@workspace).__spacePenView
+    @workspaceView = @views.getView(@workspace).__spacePenView
     @deserializeTimings.workspace = Date.now() - startTime
 
     @keymaps.defaultTarget = @workspaceView[0]
@@ -708,3 +727,7 @@ class Atom extends Model
 
   setBodyPlatformClass: ->
     document.body.classList.add("platform-#{process.platform}")
+
+  setAutoHideMenuBar: (autoHide) ->
+    ipc.send('call-window-method', 'setAutoHideMenuBar', autoHide)
+    ipc.send('call-window-method', 'setMenuBarVisibility', !autoHide)

src/browser/atom-application.coffee

@@ -70,7 +70,7 @@ class AtomApplication
 
     @autoUpdateManager = new AutoUpdateManager(@version)
     @applicationMenu = new ApplicationMenu(@version)
-    @atomProtocolHandler = new AtomProtocolHandler(@resourcePath)
+    @atomProtocolHandler = new AtomProtocolHandler(@resourcePath, @safeMode)
 
     @listenForArgumentsFromNewProcess()
     @setupJavaScriptArguments()

src/browser/atom-protocol-handler.coffee

@@ -5,16 +5,26 @@ protocol = require 'protocol'
 
 # Handles requests with 'atom' protocol.
 #
-# It's created by {AtomApplication} upon instantiation, and is used to create a
-# custom resource loader by adding the 'atom' custom protocol.
+# It's created by {AtomApplication} upon instantiation and is used to create a
+# custom resource loader for 'atom://' URLs.
+#
+# The following directories are searched in order:
+#   * ~/.atom/assets
+#   * ~/.atom/dev/packages (unless in safe mode)
+#   * ~/.atom/packages
+#   * RESOURCE_PATH/node_modules
+#
 module.exports =
 class AtomProtocolHandler
-  constructor: (@resourcePath) ->
-    @loadPaths = [
-      path.join(app.getHomeDir(), '.atom', 'dev', 'packages')
-      path.join(app.getHomeDir(), '.atom', 'packages')
-      path.join(@resourcePath, 'node_modules')
-    ]
+  constructor: (resourcePath, safeMode) ->
+    @loadPaths = []
+    @dotAtomDirectory = path.join(app.getHomeDir(), '.atom')
+
+    unless safeMode
+      @loadPaths.push(path.join(@dotAtomDirectory, 'dev', 'packages'))
+
+    @loadPaths.push(path.join(@dotAtomDirectory, 'packages'))
+    @loadPaths.push(path.join(resourcePath, 'node_modules'))
 
     @registerAtomProtocol()
 
@@ -22,7 +32,14 @@ class AtomProtocolHandler
   registerAtomProtocol: ->
     protocol.registerProtocol 'atom', (request) =>
       relativePath = path.normalize(request.url.substr(7))
-      for loadPath in @loadPaths
-        filePath = path.join(loadPath, relativePath)
-        break if fs.statSyncNoException(filePath).isFile?()
-      return new protocol.RequestFileJob(filePath)
+
+      if relativePath.indexOf('assets/') is 0
+        assetsPath = path.join(@dotAtomDirectory, relativePath)
+        filePath = assetsPath if fs.statSyncNoException(assetsPath).isFile?()
+
+      unless filePath
+        for loadPath in @loadPaths
+          filePath = path.join(loadPath, relativePath)
+          break if fs.statSyncNoException(filePath).isFile?()
+
+      new protocol.RequestFileJob(filePath)

src/browser/auto-update-manager.coffee

@@ -20,10 +20,10 @@ class AutoUpdateManager
     process.nextTick => @setupAutoUpdater()
 
   setupAutoUpdater: ->
-    autoUpdater = require 'auto-updater'
-
     if process.platform is 'win32'
-      autoUpdater.checkForUpdates = => @checkForUpdatesShim()
+      autoUpdater = require './auto-updater-win32'
+    else
+      autoUpdater = require 'auto-updater'
 
     autoUpdater.setFeedUrl @feedUrl
 
@@ -48,24 +48,6 @@ class AutoUpdateManager
     unless /\w{7}/.test(@version)
       @check(hidePopups: true)
 
-  # Windows doesn't have an auto-updater, so use this method to shim the events.
-  checkForUpdatesShim: ->
-    autoUpdater.emit 'checking-for-update'
-
-    https = require 'https'
-    request = https.get @feedUrl, (response) ->
-      if response.statusCode == 200
-        body = ""
-        response.on 'data', (chunk) -> body += chunk
-        response.on 'end', ->
-          {notes, name} = JSON.parse(body)
-          autoUpdater.emit 'update-downloaded', null, notes, name
-      else
-        autoUpdater.emit 'update-not-available'
-
-    request.on 'error', (error) ->
-      autoUpdater.emit 'error', null, error.message
-
   emitUpdateAvailableEvent: (windows...) ->
     return unless @releaseVersion? and @releaseNotes
     for atomWindow in windows

src/browser/auto-updater-win32.coffee

@@ -0,0 +1,69 @@
+{EventEmitter} = require 'events'
+_ = require 'underscore-plus'
+shellAutoUpdater = require 'auto-updater'
+SquirrelUpdate = require './squirrel-update'
+
+class AutoUpdater
+  _.extend @prototype, EventEmitter.prototype
+
+  setFeedUrl: (@updateUrl) ->
+
+  quitAndInstall: ->
+    unless SquirrelUpdate.existsSync()
+      shellAutoUpdater.quitAndInstall()
+      return
+
+    @installUpdate (error) ->
+      return if error?
+
+      SquirrelUpdate.spawn ['--processStart', 'atom.exe'], ->
+        shellAutoUpdater.quitAndInstall()
+
+  downloadUpdate: (callback) ->
+    SquirrelUpdate.spawn ['--download', @updateUrl], (error, stdout) ->
+      return callback(error) if error?
+
+      try
+        # Last line of output is the JSON details about the releases
+        json = stdout.trim().split('\n').pop()
+        update = JSON.parse(json)?.releasesToApply?.pop?()
+      catch error
+        error.stdout = stdout
+        return callback(error)
+
+      callback(null, update)
+
+  installUpdate: (callback) ->
+    SquirrelUpdate.spawn(['--update', @updateUrl], callback)
+
+  checkForUpdates: ->
+    throw new Error('Update URL is not set') unless @updateUrl
+
+    @emit 'checking-for-update'
+
+    unless SquirrelUpdate.existsSync()
+      @emit 'update-not-available'
+      return
+
+    @downloadUpdate (error, update) =>
+      if error?
+        console.log "Failed to download: #{error.message} - #{error.code} - #{error.stdout}"
+        @emit 'update-not-available'
+        return
+
+      unless update?
+        @emit 'update-not-available'
+        return
+
+      @installUpdate (error) =>
+        if error?
+          console.log "Failed to update: #{error.message} - #{error.code} - #{error.stdout}"
+          @emit 'update-not-available'
+          return
+
+        console.log "Updated to #{update.version}"
+
+        @emit 'update-available'
+        @emit 'update-downloaded', {}, update.releaseNotes, update.version, new Date(), 'https://atom.io', => @quitAndInstall()
+
+module.exports = new AutoUpdater()

src/browser/main.coffee

@@ -14,6 +14,10 @@ process.on 'uncaughtException', (error={}) ->
   nslog(error.stack) if error.stack?
 
 start = ->
+  if process.platform is 'win32'
+    SquirrelUpdate = require './squirrel-update'
+    return if SquirrelUpdate.handleStartupEvent()
+
   args = parseCommandLine()
 
   addPathToOpen = (event, pathToOpen) ->
@@ -134,6 +138,10 @@ parseCommandLine = ->
   unless fs.statSyncNoException(resourcePath)
     resourcePath = path.dirname(path.dirname(__dirname))
 
+  # On Yosemite the $PATH is not inherited by the "open" command, so we have to
+  # explicitly pass it by command line, see http://git.io/YC8_Ew.
+  process.env.PATH = args['path-environment'] if args['path-environment']
+
   {resourcePath, pathsToOpen, executedFrom, test, version, pidToKillWhenClosed, devMode, safeMode, newWindow, specDirectory, logFile}
 
 start()

src/browser/squirrel-update.coffee

@@ -0,0 +1,44 @@
+app = require 'app'
+ChildProcess = require 'child_process'
+fs = require 'fs'
+path = require 'path'
+
+updateDotExe = path.resolve(path.dirname(process.execPath), '..', 'Update.exe')
+exeName = path.basename(process.execPath)
+
+# Spawn the Update.exe with the given arguments and invoke the callback when
+# the command completes.
+exports.spawn = (args, callback) ->
+  updateProcess = ChildProcess.spawn(updateDotExe, args)
+
+  stdout = ''
+  updateProcess.stdout.on 'data', (data) -> stdout += data
+
+  error = null
+  updateProcess.on 'error', (processError) -> error ?= processError
+  updateProcess.on 'close', (code, signal) ->
+    error ?= new Error("Command failed: #{signal}") if code isnt 0
+    error?.code ?= code
+    error?.stdout ?= stdout
+    callback(error, stdout)
+
+  undefined
+
+# Is the Update.exe installed with Atom?
+exports.existsSync = ->
+  fs.existsSync(updateDotExe)
+
+# Handle squirrel events denoted by --squirrel-* command line arguments.
+exports.handleStartupEvent = ->
+  switch process.argv[1]
+    when '--squirrel-install', '--squirrel-updated'
+      exports.spawn ['--createShortcut', exeName], -> app.quit()
+      true
+    when '--squirrel-uninstall'
+      exports.spawn ['--removeShortcut', exeName], -> app.quit()
+      true
+    when '--squirrel-obsolete'
+      app.quit()
+      true
+    else
+      false

src/command-registry.coffee

@@ -35,9 +35,7 @@ SpecificityCache = {}
 # ```coffee
 # atom.commands.add 'atom-text-editor',
 #   'user:insert-date': (event) ->
-#     editor = $(this).view().getModel()
-#     # soon the above above line will be:
-#     # editor = @getModel()
+#     editor = @getModel()
 #     editor.insertText(new Date().toLocaleString())
 # ```
 module.exports =
@@ -130,25 +128,26 @@ class CommandRegistry
   #  * `jQuery` Present if the command was registered with the legacy
   #    `$::command` method.
   findCommands: ({target}) ->
+    commandNames = new Set
     commands = []
     currentTarget = target
     loop
+      for name, listeners of @inlineListenersByCommandName
+        if listeners.has(currentTarget) and not commandNames.has(name)
+          commandNames.add(name)
+          commands.push({name, displayName: _.humanizeEventName(name)})
+
       for commandName, listeners of @selectorBasedListenersByCommandName
         for listener in listeners
           if currentTarget.webkitMatchesSelector?(listener.selector)
-            commands.push
-              name: commandName
-              displayName: _.humanizeEventName(commandName)
+            unless commandNames.has(commandName)
+              commandNames.add(commandName)
+              commands.push
+                name: commandName
+                displayName: _.humanizeEventName(commandName)
 
-      break if currentTarget is @rootNode
-      currentTarget = currentTarget.parentNode
-      break unless currentTarget?
-
-    for name, displayName of $(target).events() when displayName
-      commands.push({name, displayName, jQuery: true})
-
-    for name, displayName of $(window).events() when displayName
-      commands.push({name, displayName, jQuery: true})
+      break if currentTarget is window
+      currentTarget = currentTarget.parentNode ? window
 
     commands
 

src/config-schema.coffee

@@ -35,6 +35,47 @@ module.exports =
       destroyEmptyPanes:
         type: 'boolean'
         default: true
+      fileEncoding:
+        description: 'Default character set encoding to use when reading and writing files.'
+        type: 'string'
+        default: 'utf8'
+        enum: [
+          'cp437',
+          'eucjp',
+          'euckr',
+          'gbk',
+          'iso88591',
+          'iso885910',
+          'iso885913',
+          'iso885914',
+          'iso885915',
+          'iso885916',
+          'iso88592',
+          'iso88593',
+          'iso88594',
+          'iso88595',
+          'iso88596',
+          'iso88597',
+          'iso88597',
+          'iso88598',
+          'koi8r',
+          'koi8u',
+          'macroman',
+          'shiftjis',
+          'utf16be',
+          'utf16le',
+          'utf8',
+          'windows1250',
+          'windows1251',
+          'windows1252',
+          'windows1253',
+          'windows1254',
+          'windows1255',
+          'windows1256',
+          'windows1257',
+          'windows1258',
+          'windows866'
+        ]
 
   editor:
     type: 'object'
@@ -74,6 +115,10 @@ module.exports =
       autoIndent:
         type: 'boolean'
         default: true
+        description: 'Automatically indent the cursor when inserting a newline'
+      autoIndentOnPaste:
+        type: 'boolean'
+        default: true
       normalizeIndentOnPaste:
         type: 'boolean'
         default: true
@@ -105,10 +150,20 @@ module.exports =
       scrollPastEnd:
         type: 'boolean'
         default: false
+      undoGroupingInterval:
+        type: 'integer'
+        default: 500
+        minimum: 0
+        description: 'Time interval in milliseconds within which operations will be grouped together in the undo history'
       useHardwareAcceleration:
         type: 'boolean'
         default: true
         description: 'Disabling will improve editor font rendering but reduce scrolling performance.'
+      useShadowDOM:
+        type: 'boolean'
+        default: false
+        title: 'Use Shadow DOM'
+        description: 'Enable to test out themes and packages with the new shadow DOM before it ships by default.'
       confirmCheckoutHeadRevision:
         type: 'boolean'
         default: true
@@ -132,3 +187,9 @@ module.exports =
         type: 'boolean'
         default: process.platform isnt 'darwin'
         description: 'Increase/decrease the editor font size when pressing the Ctrl key and scrolling the mouse up/down.'
+
+if process.platform in ['win32', 'linux']
+  module.exports.core.properties.autoHideMenuBar =
+    type: 'boolean'
+    default: false
+    description: 'Automatically hide the menu bar and toggle it by pressing Alt. This is only supported on Windows & Linux.'

src/config.coffee

@@ -536,11 +536,13 @@ class Config
 
     if scopeSelector?
       settings = @scopedSettingsStore.propertiesForSourceAndSelector('user-config', scopeSelector)
-      @scopedSettingsStore.removePropertiesForSourceAndSelector('user-config', scopeSelector)
-      _.setValueForKeyPath(settings, keyPath, undefined)
-      @addScopedSettings('user-config', scopeSelector, settings, @usersScopedSettingPriority)
-      @save() unless @configFileHasErrors
-      @getDefault(scopeSelector, keyPath)
+      if _.valueForKeyPath(settings, keyPath)?
+        @scopedSettingsStore.removePropertiesForSourceAndSelector('user-config', scopeSelector)
+        _.setValueForKeyPath(settings, keyPath, undefined)
+        settings = withoutEmptyObjects(settings)
+        @addScopedSettings('user-config', scopeSelector, settings, @usersScopedSettingPriority) if settings?
+        @save() unless @configFileHasErrors
+        @getDefault(scopeSelector, keyPath)
     else
       @set(keyPath, _.valueForKeyPath(@defaultSettings, keyPath))
       @get(keyPath)
@@ -1046,3 +1048,15 @@ splitKeyPath = (keyPath) ->
       startIndex = i + 1
   keyPathArray.push keyPath.substr(startIndex, keyPath.length)
   keyPathArray
+
+withoutEmptyObjects = (object) ->
+  resultObject = undefined
+  if isPlainObject(object)
+    for key, value of object
+      newValue = withoutEmptyObjects(value)
+      if newValue?
+        resultObject ?= {}
+        resultObject[key] = newValue
+  else
+    resultObject = object
+  resultObject

src/context-menu-manager.coffee

@@ -76,8 +76,8 @@ class ContextMenuManager
   #     * `event` The click event that deployed the context menu.
   add: (itemsBySelector) ->
     # Detect deprecated file path as first argument
-    unless typeof itemsBySelector is 'object'
-      Grim.deprecate("ContextMenuManage::add has changed to take a single object as its argument. Please consult the documentation.")
+    if itemsBySelector? and typeof itemsBySelector isnt 'object'
+      Grim.deprecate("ContextMenuManager::add has changed to take a single object as its argument. Please consult the documentation.")
       itemsBySelector = arguments[1]
       devMode = arguments[2]?.devMode
 

src/cursor.coffee

@@ -17,7 +17,7 @@ class Cursor extends Model
   visible: true
   needsAutoscroll: null
 
-  # Instantiated by an {TextEditor}
+  # Instantiated by a {TextEditor}
   constructor: ({@editor, @marker, id}) ->
     @emitter = new Emitter
 
@@ -171,6 +171,10 @@ class Cursor extends Model
   Section: Cursor Position Details
   ###
 
+  # Public: Returns the underlying {Marker} for the cursor.
+  # Useful with overlay {Decoration}s.
+  getMarker: -> @marker
+
   # Public: Identifies if the cursor is surrounded by whitespace.
   #
   # "Surrounded" here means that the character directly before and after the
@@ -392,7 +396,7 @@ class Cursor extends Model
 
   # Public: Moves the cursor to the next word boundary.
   moveToNextWordBoundary: ->
-    if position = @getMoveNextWordBoundaryBufferPosition()
+    if position = @getNextWordBoundaryBufferPosition()
       @setBufferPosition(position)
 
   # Public: Moves the cursor to the beginning of the buffer line, skipping all
@@ -420,6 +424,61 @@ class Cursor extends Model
   Section: Local Positions and Ranges
   ###
 
+  # Public: Returns buffer position of previous word boundary. It might be on
+  # the current word, or the previous word.
+  #
+  # * `options` (optional) {Object} with the following keys:
+  #   * `wordRegex` A {RegExp} indicating what constitutes a "word"
+  #      (default: {::wordRegExp})
+  getPreviousWordBoundaryBufferPosition: (options = {}) ->
+    currentBufferPosition = @getBufferPosition()
+    previousNonBlankRow = @editor.buffer.previousNonBlankRow(currentBufferPosition.row)
+    scanRange = [[previousNonBlankRow, 0], currentBufferPosition]
+
+    beginningOfWordPosition = null
+    @editor.backwardsScanInBufferRange (options.wordRegex ? @wordRegExp()), scanRange, ({range, stop}) ->
+      if range.start.row < currentBufferPosition.row and currentBufferPosition.column > 0
+        # force it to stop at the beginning of each line
+        beginningOfWordPosition = new Point(currentBufferPosition.row, 0)
+      else if range.end.isLessThan(currentBufferPosition)
+        beginningOfWordPosition = range.end
+      else
+        beginningOfWordPosition = range.start
+
+      if not beginningOfWordPosition?.isEqual(currentBufferPosition)
+        stop()
+
+    beginningOfWordPosition or currentBufferPosition
+
+  # Public: Returns buffer position of the next word boundary. It might be on
+  # the current word, or the previous word.
+  #
+  # * `options` (optional) {Object} with the following keys:
+  #   * `wordRegex` A {RegExp} indicating what constitutes a "word"
+  #      (default: {::wordRegExp})
+  getNextWordBoundaryBufferPosition: (options = {}) ->
+    currentBufferPosition = @getBufferPosition()
+    scanRange = [currentBufferPosition, @editor.getEofBufferPosition()]
+
+    endOfWordPosition = null
+    @editor.scanInBufferRange (options.wordRegex ? @wordRegExp()), scanRange, ({range, stop}) ->
+      if range.start.row > currentBufferPosition.row
+        # force it to stop at the beginning of each line
+        endOfWordPosition = new Point(range.start.row, 0)
+      else if range.start.isGreaterThan(currentBufferPosition)
+        endOfWordPosition = range.start
+      else
+        endOfWordPosition = range.end
+
+      if not endOfWordPosition?.isEqual(currentBufferPosition)
+        stop()
+
+    endOfWordPosition or currentBufferPosition
+
+  getMoveNextWordBoundaryBufferPosition: (options) ->
+    deprecate 'Use `::getNextWordBoundaryBufferPosition(options)` instead'
+    @getNextWordBoundaryBufferPosition(options)
+
   # Public: Retrieves the buffer position of where the current word starts.
   #
   # * `options` (optional) An {Object} with the following keys:
@@ -452,49 +511,6 @@ class Cursor extends Model
     else
       currentBufferPosition
 
-  # Public: Retrieves buffer position of previous word boundary. It might be on
-  # the current word, or the previous word.
-  getPreviousWordBoundaryBufferPosition: (options = {}) ->
-    currentBufferPosition = @getBufferPosition()
-    previousNonBlankRow = @editor.buffer.previousNonBlankRow(currentBufferPosition.row)
-    scanRange = [[previousNonBlankRow, 0], currentBufferPosition]
-
-    beginningOfWordPosition = null
-    @editor.backwardsScanInBufferRange (options.wordRegex ? @wordRegExp()), scanRange, ({range, stop}) ->
-      if range.start.row < currentBufferPosition.row and currentBufferPosition.column > 0
-        # force it to stop at the beginning of each line
-        beginningOfWordPosition = new Point(currentBufferPosition.row, 0)
-      else if range.end.isLessThan(currentBufferPosition)
-        beginningOfWordPosition = range.end
-      else
-        beginningOfWordPosition = range.start
-
-      if not beginningOfWordPosition?.isEqual(currentBufferPosition)
-        stop()
-
-    beginningOfWordPosition or currentBufferPosition
-
-  # Public: Retrieves buffer position of the next word boundary. It might be on
-  # the current word, or the previous word.
-  getMoveNextWordBoundaryBufferPosition: (options = {}) ->
-    currentBufferPosition = @getBufferPosition()
-    scanRange = [currentBufferPosition, @editor.getEofBufferPosition()]
-
-    endOfWordPosition = null
-    @editor.scanInBufferRange (options.wordRegex ? @wordRegExp()), scanRange, ({range, stop}) ->
-      if range.start.row > currentBufferPosition.row
-        # force it to stop at the beginning of each line
-        endOfWordPosition = new Point(range.start.row, 0)
-      else if range.start.isGreaterThan(currentBufferPosition)
-        endOfWordPosition = range.start
-      else
-        endOfWordPosition = range.end
-
-      if not endOfWordPosition?.isEqual(currentBufferPosition)
-        stop()
-
-    endOfWordPosition or currentBufferPosition
-
   # Public: Retrieves the buffer position of where the current word ends.
   #
   # * `options` (optional) {Object} with the following keys:

src/display-buffer.coffee

@@ -735,9 +735,7 @@ class DisplayBuffer extends Model
   #
   # Returns a {Point}.
   screenPositionForBufferPosition: (bufferPosition, options) ->
-    # TODO: Expand this exception to cover all versions once we burn it in on non-release builds
-    if @isDestroyed() and not atom.isReleasedVersion()
-      throw new Error("This TextEditor has been destroyed")
+    throw new Error("This TextEditor has been destroyed") if @isDestroyed()
 
     { row, column } = @buffer.clipPosition(bufferPosition)
     [startScreenRow, endScreenRow] = @rowMap.screenRowRangeForBufferRow(row)
@@ -1077,8 +1075,9 @@ class DisplayBuffer extends Model
 
   destroyed: ->
     marker.unsubscribe() for id, marker of @markers
-    @tokenizedBuffer.destroy()
+    @scopedConfigSubscriptions.dispose()
     @unsubscribe()
+    @tokenizedBuffer.destroy()
 
   logLines: (start=0, end=@getLastRow()) ->
     for row in [start..end]

src/gutter-component.coffee

@@ -16,12 +16,12 @@ GutterComponent = React.createClass
   measuredWidth: null
 
   render: ->
-    {scrollHeight, scrollViewHeight, onMouseDown, backgroundColor, gutterBackgroundColor} = @props
+    {scrollHeight, scrollViewHeight, backgroundColor, gutterBackgroundColor} = @props
 
     if gutterBackgroundColor isnt 'rbga(0, 0, 0, 0)'
       backgroundColor = gutterBackgroundColor
 
-    div className: 'gutter', onClick: @onClick, onMouseDown: @onMouseDown,
+    div className: 'gutter',
       div className: 'line-numbers', ref: 'lineNumbers', style:
         height: Math.max(scrollHeight, scrollViewHeight)
         WebkitTransform: @getTransform()
@@ -45,6 +45,10 @@ GutterComponent = React.createClass
     @appendDummyLineNumber()
     @updateLineNumbers() if @props.performedInitialMeasurement
 
+    node = @getDOMNode()
+    node.addEventListener 'click', @onClick
+    node.addEventListener 'mousedown', @onMouseDown
+
   # Only update the gutter if the visible row range has changed or if a
   # non-zero-delta change to the screen lines has occurred within the current
   # visible row range.

src/highlight-component.coffee

@@ -14,9 +14,9 @@ HighlightComponent = React.createClass
 
     div {className},
       if endPixelPosition.top is startPixelPosition.top
-        @renderSingleLineRegions()
+        @renderSingleLineRegions(decoration.deprecatedRegionClass)
       else
-        @renderMultiLineRegions()
+        @renderMultiLineRegions(decoration.deprecatedRegionClass)
 
   componentDidMount: ->
     {editor, decoration} = @props
@@ -41,25 +41,32 @@ HighlightComponent = React.createClass
       removeFlashClass = -> node.classList.remove(flash.class)
       @flashTimeoutId = setTimeout(removeFlashClass, flash.duration)
 
-  renderSingleLineRegions: ->
+  renderSingleLineRegions: (regionClass) ->
     {startPixelPosition, endPixelPosition, lineHeightInPixels} = @props
 
+    className = 'region'
+    className += " #{regionClass}" if regionClass?
+
     [
-      div className: 'region', key: 0, style:
+      div className: className, key: 0, style:
         top: startPixelPosition.top
         height: lineHeightInPixels
         left: startPixelPosition.left
         width: endPixelPosition.left - startPixelPosition.left
     ]
 
-  renderMultiLineRegions: ->
+  renderMultiLineRegions: (regionClass) ->
     {startPixelPosition, endPixelPosition, lineHeightInPixels} = @props
+
+    className = 'region'
+    className += " #{regionClass}" if regionClass?
+
     regions = []
     index = 0
 
     # First row, extending from selection start to the right side of screen
     regions.push(
-      div className: 'region', key: index++, style:
+      div className: className, key: index++, style:
         top: startPixelPosition.top
         left: startPixelPosition.left
         height: lineHeightInPixels
@@ -69,7 +76,7 @@ HighlightComponent = React.createClass
     # Middle rows, extending from left side to right side of screen
     if endPixelPosition.top - startPixelPosition.top > lineHeightInPixels
       regions.push(
-        div className: 'region', key: index++, style:
+        div className: className, key: index++, style:
           top: startPixelPosition.top + lineHeightInPixels
           height: endPixelPosition.top - startPixelPosition.top - lineHeightInPixels
           left: 0
@@ -78,7 +85,7 @@ HighlightComponent = React.createClass
 
     # Last row, extending from left side of screen to selection end
     regions.push(
-      div className: 'region', key: index, style:
+      div className: className, key: index, style:
         top: endPixelPosition.top
         height: lineHeightInPixels
         left: 0
@@ -88,4 +95,4 @@ HighlightComponent = React.createClass
     regions
 
   shouldComponentUpdate: (newProps) ->
-    not isEqualForProperties(newProps, @props, 'startPixelPosition', 'endPixelPosition', 'lineHeightInPixels')
+    not isEqualForProperties(newProps, @props, 'startPixelPosition', 'endPixelPosition', 'lineHeightInPixels', 'decoration')

src/highlights-component.coffee

@@ -17,9 +17,15 @@ HighlightsComponent = React.createClass
     highlightComponents = []
     for markerId, {startPixelPosition, endPixelPosition, decorations} of highlightDecorations
       for decoration in decorations
-        highlightComponents.push(HighlightComponent({editor, key: "#{markerId}-#{decoration.class}", startPixelPosition, endPixelPosition, decoration, lineHeightInPixels}))
+        highlightComponents.push(HighlightComponent({editor, key: "#{markerId}-#{decoration.id}", startPixelPosition, endPixelPosition, decoration, lineHeightInPixels}))
 
     highlightComponents
 
+  componentDidMount: ->
+    if atom.config.get('editor.useShadowDOM')
+      insertionPoint = document.createElement('content')
+      insertionPoint.setAttribute('select', '.underlayer')
+      @getDOMNode().appendChild(insertionPoint)
+
   shouldComponentUpdate: (newProps) ->
     not isEqualForProperties(newProps, @props, 'highlightDecorations', 'lineHeightInPixels', 'defaultCharWidth', 'scopedCharacterWidthsChangeCount')

src/input-component.coffee

@@ -7,16 +7,17 @@ InputComponent = React.createClass
   displayName: 'InputComponent'
 
   render: ->
-    {className, style, onFocus, onBlur} = @props
+    {className, style} = @props
 
-    input {className, style, onFocus, onBlur, 'data-react-skip-selection-restoration': true}
+    input {className, style, 'data-react-skip-selection-restoration': true}
 
   getInitialState: ->
     {lastChar: ''}
 
   componentDidMount: ->
-    @getDOMNode().addEventListener 'paste', @onPaste
-    @getDOMNode().addEventListener 'compositionupdate', @onCompositionUpdate
+    node = @getDOMNode()
+    node.addEventListener 'paste', @onPaste
+    node.addEventListener 'compositionupdate', @onCompositionUpdate
 
   # Don't let text accumulate in the input forever, but avoid excessive reflows
   componentDidUpdate: ->
@@ -34,11 +35,5 @@ InputComponent = React.createClass
   onPaste: (e) ->
     e.preventDefault()
 
-  onFocus: ->
-    @props.onFocus?()
-
-  onBlur: ->
-    @props.onBlur?()
-
   focus: ->
     @getDOMNode().focus()

src/language-mode.coffee

@@ -250,8 +250,8 @@ class LanguageMode
     return currentIndentLevel unless increaseIndentRegex = @increaseIndentRegexForScopeDescriptor(scopeDescriptor)
 
     currentLine = @buffer.lineForRow(bufferRow)
-    precedingRow = if bufferRow > 0 then bufferRow - 1 else null
-    return currentIndentLevel unless precedingRow?
+    precedingRow = @buffer.previousNonBlankRow(bufferRow)
+    return 0 unless precedingRow?
 
     precedingLine = @buffer.lineForRow(precedingRow)
     desiredIndentLevel = @editor.indentationForBufferRow(precedingRow)

src/lines-component.coffee

@@ -7,6 +7,7 @@ React = require 'react-atom-fork'
 Decoration = require './decoration'
 CursorsComponent = require './cursors-component'
 HighlightsComponent = require './highlights-component'
+OverlayManager = require './overlay-manager'
 
 DummyLineNode = $$(-> @div className: 'line', style: 'position: absolute; visibility: hidden;', => @span 'x')[0]
 AcceptFilter = {acceptNode: -> NodeFilter.FILTER_ACCEPT}
@@ -20,7 +21,7 @@ LinesComponent = React.createClass
     {performedInitialMeasurement, cursorBlinkPeriod, cursorBlinkResumeDelay} = @props
 
     if performedInitialMeasurement
-      {editor, highlightDecorations, scrollHeight, scrollWidth, placeholderText, backgroundColor} = @props
+      {editor, overlayDecorations, highlightDecorations, scrollHeight, scrollWidth, placeholderText, backgroundColor} = @props
       {lineHeightInPixels, defaultCharWidth, scrollViewHeight, scopedCharacterWidthsChangeCount} = @props
       {scrollTop, scrollLeft, cursorPixelRects, mini} = @props
       style =
@@ -57,10 +58,23 @@ LinesComponent = React.createClass
     @lineIdsByScreenRow = {}
     @renderedDecorationsByLineId = {}
 
+  componentDidMount: ->
+    if @props.useShadowDOM
+      insertionPoint = document.createElement('content')
+      insertionPoint.setAttribute('select', '.overlayer')
+      @getDOMNode().appendChild(insertionPoint)
+
+      insertionPoint = document.createElement('content')
+      insertionPoint.setAttribute('select', 'atom-overlay')
+      @overlayManager = new OverlayManager(@props.hostElement)
+      @getDOMNode().appendChild(insertionPoint)
+    else
+      @overlayManager = new OverlayManager(@getDOMNode())
+
   shouldComponentUpdate: (newProps) ->
     return true unless isEqualForProperties(newProps, @props,
       'renderedRowRange', 'lineDecorations', 'highlightDecorations', 'lineHeightInPixels', 'defaultCharWidth',
-      'scrollTop', 'scrollLeft', 'showIndentGuide', 'scrollingVertically', 'visible',
+      'overlayDecorations', 'scrollTop', 'scrollLeft', 'showIndentGuide', 'scrollingVertically', 'visible',
       'scrollViewHeight', 'mouseWheelScreenRow', 'scopedCharacterWidthsChangeCount', 'lineWidth', 'useHardwareAcceleration',
       'placeholderText', 'performedInitialMeasurement', 'backgroundColor', 'cursorPixelRects'
     )
@@ -86,6 +100,8 @@ LinesComponent = React.createClass
     @updateLines(@props.lineWidth isnt prevProps.lineWidth)
     @measureCharactersInNewLines() if visible and not scrollingVertically
 
+    @overlayManager?.render(@props)
+
   clearScreenRowCaches: ->
     @screenRowsByLineId = {}
     @lineIdsByScreenRow = {}

src/menu-helpers.coffee

@@ -44,7 +44,7 @@ normalizeLabel = (label) ->
     label.replace(/\&/g, '')
 
 cloneMenuItem = (item) ->
-  item = _.pick(item, 'type', 'label', 'enabled', 'command', 'submenu', 'commandDetail')
+  item = _.pick(item, 'type', 'label', 'enabled', 'visible', 'command', 'submenu', 'commandDetail')
   if item.submenu?
     item.submenu = item.submenu.map (submenuItem) -> cloneMenuItem(submenuItem)
   item

src/overlay-manager.coffee

@@ -0,0 +1,43 @@
+module.exports =
+class OverlayManager
+  constructor: (@container) ->
+    @overlays = {}
+
+  render: (props) ->
+    {editor, overlayDecorations, lineHeightInPixels} = props
+
+    existingDecorations = null
+    for markerId, {isMarkerReversed, headPixelPosition, decorations} of overlayDecorations
+      for decoration in decorations
+        @renderOverlay(editor, decoration, headPixelPosition, lineHeightInPixels)
+
+        existingDecorations ?= {}
+        existingDecorations[decoration.id] = true
+
+    for id, overlay of @overlays
+      unless existingDecorations? and id of existingDecorations
+        @container.removeChild(overlay)
+        delete @overlays[id]
+
+    return
+
+  renderOverlay: (editor, decoration, pixelPosition, lineHeightInPixels) ->
+    item = atom.views.getView(decoration.item)
+    unless overlay = @overlays[decoration.id]
+      overlay = @overlays[decoration.id] = document.createElement('atom-overlay')
+      overlay.appendChild(item)
+      @container.appendChild(overlay)
+
+    itemWidth = item.offsetWidth
+    itemHeight = item.offsetHeight
+
+    left = pixelPosition.left
+    if left + itemWidth - editor.getScrollLeft() > editor.getWidth() and left - itemWidth >= editor.getScrollLeft()
+      left -= itemWidth
+
+    top = pixelPosition.top + lineHeightInPixels
+    if top + itemHeight - editor.getScrollTop() > editor.getHeight() and top - itemHeight - lineHeightInPixels >= editor.getScrollTop()
+      top -= itemHeight + lineHeightInPixels
+
+    overlay.style.top = top + 'px'
+    overlay.style.left = left + 'px'

src/package.coffee

@@ -50,6 +50,7 @@ class Package
   keymaps: null
   menus: null
   stylesheets: null
+  stylesheetDisposables: null
   grammars: null
   scopedProperties: null
   mainModulePath: null
@@ -175,16 +176,24 @@ class Package
   activateStylesheets: ->
     return if @stylesheetsActivated
 
-    type = @getStylesheetType()
-    for [stylesheetPath, content] in @stylesheets
-      atom.themes.applyStylesheet(stylesheetPath, content, type)
+    group = @getStylesheetType()
+    @stylesheetDisposables = new CompositeDisposable
+    for [sourcePath, source] in @stylesheets
+      if match = path.basename(sourcePath).match(/[^.]*\.([^.]*)\./)
+        context = match[1]
+      else if @metadata.theme is 'syntax'
+        context = 'atom-text-editor'
+      else
+        context = undefined
+
+      @stylesheetDisposables.add(atom.styles.addStyleSheet(source, {sourcePath, group, context}))
     @stylesheetsActivated = true
 
   activateResources: ->
     @activationDisposables = new CompositeDisposable
     @activationDisposables.add(atom.keymaps.add(keymapPath, map)) for [keymapPath, map] in @keymaps
-    @activationDisposables.add(atom.contextMenu.add(map['context-menu'])) for [menuPath, map] in @menus
-    @activationDisposables.add(atom.menu.add(map.menu)) for [menuPath, map] in @menus when map.menu
+    @activationDisposables.add(atom.contextMenu.add(map['context-menu'])) for [menuPath, map] in @menus when map['context-menu']?
+    @activationDisposables.add(atom.menu.add(map['menu'])) for [menuPath, map] in @menus when map['menu']?
 
     unless @grammarsActivated
       grammar.activate() for grammar in @grammars
@@ -320,7 +329,7 @@ class Package
   deactivateResources: ->
     grammar.deactivate() for grammar in @grammars
     scopedProperties.deactivate() for scopedProperties in @scopedProperties
-    atom.themes.removeStylesheet(stylesheetPath) for [stylesheetPath] in @stylesheets
+    @stylesheetDisposables?.dispose()
     @activationDisposables?.dispose()
     @stylesheetsActivated = false
     @grammarsActivated = false
@@ -329,11 +338,10 @@ class Package
   reloadStylesheets: ->
     oldSheets = _.clone(@stylesheets)
     @loadStylesheets()
-    atom.themes.removeStylesheet(stylesheetPath) for [stylesheetPath] in oldSheets
-    @reloadStylesheet(stylesheetPath, content) for [stylesheetPath, content] in @stylesheets
-
-  reloadStylesheet: (stylesheetPath, content) ->
-    atom.themes.applyStylesheet(stylesheetPath, content, @getStylesheetType())
+    @stylesheetDisposables.dispose()
+    @stylesheetDisposables = new CompositeDisposable
+    @stylesheetsActivated = false
+    @activateStylesheets()
 
   requireMainModule: ->
     return @mainModule if @mainModule?

src/pane-container.coffee

@@ -40,6 +40,8 @@ class PaneContainer extends Model
     @registerViewProviders()
 
     @setRoot(params?.root ? new Pane)
+    @setActivePane(@getPanes()[0]) unless @getActivePane()
+
     @destroyEmptyPanes() if params?.destroyEmptyPanes
 
     @monitorActivePaneItem()
@@ -137,6 +139,9 @@ class PaneContainer extends Model
 
   setActivePane: (activePane) ->
     if activePane isnt @activePane
+      unless activePane in @getPanes()
+        throw new Error("Setting active pane that is not present in pane container")
+
       @activePane = activePane
       @emitter.emit 'did-change-active-pane', @activePane
     @activePane
@@ -147,6 +152,9 @@ class PaneContainer extends Model
   paneForUri: (uri) ->
     find @getPanes(), (pane) -> pane.itemForUri(uri)?
 
+  paneForItem: (item) ->
+    @getPanes().find (pane) -> item in pane.getItems()
+
   saveAll: ->
     pane.saveItems() for pane in @getPanes()
 

src/pane-element.coffee

@@ -28,39 +28,21 @@ class PaneElement extends HTMLElement
     @itemViews.setAttribute 'class', 'item-views'
 
   subscribeToDOMEvents: ->
-    @addEventListener 'focusin', => @model.focus()
-    @addEventListener 'focusout', => @model.blur()
-    @addEventListener 'focus', => @getActiveView()?.focus()
+    handleFocus = (event) =>
+      @model.focus()
+      if event.target is this and view = @getActiveView()
+        view.focus()
+        event.stopPropagation()
+
+    handleBlur = (event) =>
+      @model.blur() unless @contains(event.relatedTarget)
+
+    @addEventListener 'focus', handleFocus, true
+    @addEventListener 'blur', handleBlur, true
 
   createSpacePenShim: ->
     @__spacePenView = new PaneView(this)
 
-    addCommands = (handlersByName) =>
-      for name, handler of handlersByName
-        do (handler) =>
-          @__spacePenView.command name, => handler.apply(this, arguments)
-
-    addCommands(
-      'pane:save-items': -> @getModel().saveItems()
-      'pane:show-next-item': -> @getModel().activateNextItem()
-      'pane:show-previous-item': -> @getModel().activatePreviousItem()
-      'pane:show-item-1': -> @getModel().activateItemAtIndex(0)
-      'pane:show-item-2': -> @getModel().activateItemAtIndex(1)
-      'pane:show-item-3': -> @getModel().activateItemAtIndex(2)
-      'pane:show-item-4': -> @getModel().activateItemAtIndex(3)
-      'pane:show-item-5': -> @getModel().activateItemAtIndex(4)
-      'pane:show-item-6': -> @getModel().activateItemAtIndex(5)
-      'pane:show-item-7': -> @getModel().activateItemAtIndex(6)
-      'pane:show-item-8': -> @getModel().activateItemAtIndex(7)
-      'pane:show-item-9': -> @getModel().activateItemAtIndex(8)
-      'pane:split-left': -> @getModel().splitLeft(copyActiveItem: true)
-      'pane:split-right': -> @getModel().splitRight(copyActiveItem: true)
-      'pane:split-up': -> @getModel().splitUp(copyActiveItem: true)
-      'pane:split-down': -> @getModel().splitDown(copyActiveItem: true)
-      'pane:close': -> @getModel().destroy()
-      'pane:close-other-items': -> @getModel().destroyInactiveItems()
-    )
-
   getModel: -> @model
 
   setModel: (@model) ->
@@ -86,16 +68,16 @@ class PaneElement extends HTMLElement
     hasFocus = @hasFocus()
     itemView = @model.getView(item)
 
+    unless @itemViews.contains(itemView)
+      @itemViews.appendChild(itemView)
+      callAttachHooks(itemView)
+
     for child in @itemViews.children
       if child is itemView
         @showItemView(child) if @attached
       else
         @hideItemView(child)
 
-    unless @itemViews.contains(itemView)
-      @itemViews.appendChild(itemView)
-      callAttachHooks(itemView)
-
     itemView.focus() if hasFocus
 
   showItemView: (itemView) ->
@@ -124,4 +106,26 @@ class PaneElement extends HTMLElement
   hasFocus: ->
     this is document.activeElement or @contains(document.activeElement)
 
+atom.commands.add 'atom-pane',
+  'pane:save-items': -> @getModel().saveItems()
+  'pane:show-next-item': -> @getModel().activateNextItem()
+  'pane:show-previous-item': -> @getModel().activatePreviousItem()
+  'pane:show-item-1': -> @getModel().activateItemAtIndex(0)
+  'pane:show-item-2': -> @getModel().activateItemAtIndex(1)
+  'pane:show-item-3': -> @getModel().activateItemAtIndex(2)
+  'pane:show-item-4': -> @getModel().activateItemAtIndex(3)
+  'pane:show-item-5': -> @getModel().activateItemAtIndex(4)
+  'pane:show-item-6': -> @getModel().activateItemAtIndex(5)
+  'pane:show-item-7': -> @getModel().activateItemAtIndex(6)
+  'pane:show-item-8': -> @getModel().activateItemAtIndex(7)
+  'pane:show-item-9': -> @getModel().activateItemAtIndex(8)
+  'pane:move-item-right': -> @getModel().moveItemRight()
+  'pane:move-item-left': -> @getModel().moveItemLeft()
+  'pane:split-left': -> @getModel().splitLeft(copyActiveItem: true)
+  'pane:split-right': -> @getModel().splitRight(copyActiveItem: true)
+  'pane:split-up': -> @getModel().splitUp(copyActiveItem: true)
+  'pane:split-down': -> @getModel().splitDown(copyActiveItem: true)
+  'pane:close': -> @getModel().close()
+  'pane:close-other-items': -> @getModel().destroyInactiveItems()
+
 module.exports = PaneElement = document.registerElement 'atom-pane', prototype: PaneElement.prototype

src/pane-view.coffee

@@ -119,7 +119,7 @@ class PaneView extends View
       deprecate 'Please return a Disposable object from your ::onDidChangeTitle method!' unless disposable?.dispose?
       @activeItemDisposables.add(disposable) if disposable?.dispose?
     else if item.on?
-      deprecate '::on methods for items are no longer supported. If you would like your item to support title change behavior, please implement a ::onDidChangeTitle() method.'
+      deprecate 'If you would like your pane item to support title change behavior, please implement a ::onDidChangeTitle() method. ::on methods for items are no longer supported. If not, ignore this message.'
       disposable = item.on('title-changed', @activeItemTitleChanged)
       @activeItemDisposables.add(disposable) if disposable?.dispose?
 
@@ -128,16 +128,10 @@ class PaneView extends View
       deprecate 'Please return a Disposable object from your ::onDidChangeModified method!' unless disposable?.dispose?
       @activeItemDisposables.add(disposable) if disposable?.dispose?
     else if item.on?
-      deprecate '::on methods for items are no longer supported. If you would like your item to support modified behavior, please implement a ::onDidChangeModified() method.'
+      deprecate 'If you would like your pane item to support modified behavior, please implement a ::onDidChangeModified() method. If not, ignore this message. ::on methods for items are no longer supported.'
       item.on('modified-status-changed', @activeItemModifiedChanged)
       @activeItemDisposables.add(disposable) if disposable?.dispose?
 
-    view = @model.getView(item).__spacePenView
-    otherView.hide() for otherView in @itemViews.children().not(view).views()
-    @itemViews.append(view) unless view.parent().is(@itemViews)
-    view.show() if @attached
-    view.focus() if @hasFocus()
-
     @trigger 'pane:active-item-changed', [item]
 
   onItemAdded: ({item, index}) =>

src/pane.coffee

@@ -289,6 +289,18 @@ class Pane extends Model
     else
       @activateItemAtIndex(@items.length - 1)
 
+  # Public: Move the active tab to the right.
+  moveItemRight: ->
+    index = @getActiveItemIndex()
+    rightItemIndex = index + 1
+    @moveItem(@getActiveItem(), rightItemIndex) unless rightItemIndex > @items.length - 1
+
+  # Public: Move the active tab to the left
+  moveItemLeft: ->
+    index = @getActiveItemIndex()
+    leftItemIndex = index - 1
+    @moveItem(@getActiveItem(), leftItemIndex) unless leftItemIndex < 0
+
   # Public: Get the index of the active item.
   #
   # Returns a {Number}.
@@ -502,6 +514,8 @@ class Pane extends Model
 
   # Public: Makes this pane the *active* pane, causing it to gain focus.
   activate: ->
+    throw new Error("Pane has been destroyed") if @isDestroyed()
+
     @container?.setActivePane(this)
     @emit 'activated'
     @emitter.emit 'did-activate'
@@ -606,3 +620,11 @@ class Pane extends Model
         rightmostSibling
     else
       @splitRight()
+
+  close: ->
+    @destroy() if @confirmClose()
+
+  confirmClose: ->
+    for item in @getItems()
+      return false unless @promptToSaveItem(item)
+    true

src/panel-container-element.coffee

@@ -10,21 +10,32 @@ class PanelContainerElement extends HTMLElement
     @subscriptions.add @model.onDidAddPanel(@panelAdded.bind(this))
     @subscriptions.add @model.onDidRemovePanel(@panelRemoved.bind(this))
     @subscriptions.add @model.onDidDestroy(@destroyed.bind(this))
-
-    @setAttribute('location', @model.getLocation())
+    @classList.add(@model.getLocation())
 
   panelAdded: ({panel, index}) ->
+    panelElement = panel.getView()
+    panelElement.classList.add(@model.getLocation())
     if index >= @childNodes.length
-      @appendChild(panel.getView())
+      @appendChild(panelElement)
     else
       referenceItem = @childNodes[index + 1]
-      @insertBefore(panel.getView(), referenceItem)
+      @insertBefore(panelElement, referenceItem)
+
+    if @model.isModal()
+      @hideAllPanelsExcept(panel)
+      @subscriptions.add panel.onDidChangeVisible (visible) =>
+        @hideAllPanelsExcept(panel) if visible
 
   panelRemoved: ({panel, index}) ->
-    @removeChild(@childNodes[index])
+    @removeChild(panel.getView())
 
   destroyed: ->
     @subscriptions.dispose()
     @parentNode?.removeChild(this)
 
+  hideAllPanelsExcept: (excludedPanel) ->
+    for panel in @model.getPanels()
+      panel.hide() unless panel is excludedPanel
+    return
+
 module.exports = PanelContainerElement = document.registerElement 'atom-panel-container', prototype: PanelContainerElement.prototype

src/panel-container.coffee

@@ -8,7 +8,7 @@ class PanelContainer
     @panels = []
 
   destroy: ->
-    pane.destroy() for pane in @getPanels()
+    panel.destroy() for panel in @getPanels()
     @subscriptions.dispose()
     @emitter.emit 'did-destroy', this
     @emitter.dispose()
@@ -34,10 +34,12 @@ class PanelContainer
 
   getLocation: -> @location
 
+  isModal: -> @location is 'modal'
+
   getPanels: -> @panels
 
   addPanel: (panel) ->
-    @subscriptions.add panel.onDidDestroy(@panelDestoryed.bind(this))
+    @subscriptions.add panel.onDidDestroy(@panelDestroyed.bind(this))
 
     index = @getPanelIndex(panel)
     if index is @panels.length
@@ -48,7 +50,7 @@ class PanelContainer
     @emitter.emit 'did-add-panel', {panel, index}
     panel
 
-  panelDestoryed: (panel) ->
+  panelDestroyed: (panel) ->
     index = @panels.indexOf(panel)
     if index > -1
       @panels.splice(index, 1)

src/panel-element.coffee

@@ -12,6 +12,7 @@ class PanelElement extends HTMLElement
     @appendChild(view)
     callAttachHooks(view) # for backward compatibility with SpacePen views
 
+    @classList.add(@model.getClassName().split(' ')...) if @model.getClassName()?
     @subscriptions.add @model.onDidChangeVisible(@visibleChanged.bind(this))
     @subscriptions.add @model.onDidDestroy(@destroyed.bind(this))
 

src/panel.coffee

@@ -14,7 +14,7 @@ class Panel
   Section: Construction and Destruction
   ###
 
-  constructor: ({@viewRegistry, @item, @visible, @priority}) ->
+  constructor: ({@viewRegistry, @item, @visible, @priority, @className}) ->
     @emitter = new Emitter
     @visible ?= true
     @priority ?= 100
@@ -22,6 +22,7 @@ class Panel
   # Public: Destroy and remove this panel from the UI.
   destroy: ->
     @emitter.emit 'did-destroy', this
+    @emitter.dispose()
 
   ###
   Section: Event Subscription
@@ -62,6 +63,8 @@ class Panel
   # Public: Returns a {Number} indicating this panel's priority.
   getPriority: -> @priority
 
+  getClassName: -> @className
+
   # Public: Returns a {Boolean} true when the panel is visible.
   isVisible: -> @visible
 

src/project.coffee

@@ -196,7 +196,8 @@ class Project extends Model
       excludeVcsIgnores: atom.config.get('core.excludeVcsIgnoredPaths')
       exclusions: atom.config.get('core.ignoredNames')
 
-    task = Task.once require.resolve('./scan-handler'), @getPath(), regex.source, searchOptions, ->
+    # TODO: need to support all paths in @getPaths()
+    task = Task.once require.resolve('./scan-handler'), @getPaths()[0], regex.source, searchOptions, ->
       deferred.resolve()
 
     task.on 'scan:result-found', (result) =>
@@ -322,6 +323,7 @@ class Project extends Model
   # Still needed when deserializing a tokenized buffer
   buildBufferSync: (absoluteFilePath) ->
     buffer = new TextBuffer({filePath: absoluteFilePath})
+    buffer.setEncoding(atom.config.get('core.fileEncoding'))
     @addBuffer(buffer)
     buffer.loadSync()
     buffer
@@ -337,6 +339,7 @@ class Project extends Model
       throw new Error("Atom can only handle files < 2MB for now.")
 
     buffer = new TextBuffer({filePath: absoluteFilePath})
+    buffer.setEncoding(atom.config.get('core.fileEncoding'))
     @addBuffer(buffer)
     buffer.load()
       .then((buffer) -> buffer)

src/scrollbar-component.coffee

@@ -23,7 +23,7 @@ ScrollbarComponent = React.createClass
         style.right = verticalScrollbarWidth if scrollableInOppositeDirection
         style.height = horizontalScrollbarHeight
 
-    div {className, style, @onScroll},
+    div {className, style},
       switch orientation
         when 'vertical'
           div className: 'scrollbar-content', style: {height: scrollHeight}
@@ -36,6 +36,11 @@ ScrollbarComponent = React.createClass
     unless orientation is 'vertical' or orientation is 'horizontal'
       throw new Error("Must specify an orientation property of 'vertical' or 'horizontal'")
 
+    @getDOMNode().addEventListener 'scroll', @onScroll
+
+  componentWillUnmount: ->
+    @getDOMNode().removeEventListener 'scroll', @onScroll
+
   shouldComponentUpdate: (newProps) ->
     return true if newProps.visible isnt @props.visible
 

src/select-list-view.coffee

@@ -57,7 +57,7 @@ class SelectListView extends View
   initialize: ->
     @filterEditorView.getEditor().getBuffer().onDidChange =>
       @schedulePopulateList()
-    @filterEditorView.hiddenInput.on 'focusout', =>
+    @filterEditorView.on 'blur', =>
       @cancel() unless @cancelling
 
     # This prevents the focusout event from firing on the filter editor view
@@ -254,7 +254,7 @@ class SelectListView extends View
   # Extended: Store the currently focused element. This element will be given
   # back focus when {::cancel} is called.
   storeFocusedElement: ->
-    @previouslyFocusedElement = $(':focus')
+    @previouslyFocusedElement = $(document.activeElement)
 
   ###
   Section: Private

src/selection.coffee

@@ -4,6 +4,8 @@
 {Emitter} = require 'event-kit'
 Grim = require 'grim'
 
+NonWhitespaceRegExp = /\S/
+
 # Extended: Represents a selection in the {TextEditor}.
 module.exports =
 class Selection extends Model
@@ -322,7 +324,7 @@ class Selection extends Model
   # * `row` The line {Number} to select (default: the row of the cursor).
   selectLine: (row=@cursor.getBufferPosition().row) ->
     range = @editor.bufferRangeForBufferRow(row, includeNewline: true)
-    @setBufferRange(@getBufferRange().union(range))
+    @setBufferRange(@getBufferRange().union(range), autoscroll: true)
     @linewise = true
     @wordwise = false
     @initialScreenRange = @getScreenRange()
@@ -348,6 +350,7 @@ class Selection extends Model
   #   * `autoIndentNewline` if `true`, indent newline appropriately.
   #   * `autoDecreaseIndent` if `true`, decreases indent level appropriately
   #     (for example, when a closing bracket is inserted).
+  #   * `normalizeLineEndings` (optional) {Boolean} (default: true)
   #   * `undo` if `skip`, skips the undo stack for this operation.
   insertText: (text, options={}) ->
     oldBufferRange = @getBufferRange()
@@ -359,7 +362,7 @@ class Selection extends Model
     if options.indentBasis? and not options.autoIndent
       text = @normalizeIndents(text, options.indentBasis)
 
-    newBufferRange = @editor.buffer.setTextInRange(oldBufferRange, text, pick(options, 'undo'))
+    newBufferRange = @editor.buffer.setTextInRange(oldBufferRange, text, pick(options, 'undo', 'normalizeLineEndings'))
 
     if options.select
       @setBufferRange(newBufferRange, reversed: wasReversed)
@@ -367,13 +370,16 @@ class Selection extends Model
       @cursor.setBufferPosition(newBufferRange.end, skipAtomicTokens: true) if wasReversed
 
     if options.autoIndent
-      @editor.autoIndentBufferRow(row) for row in newBufferRange.getRows()
+      precedingText = @editor.getTextInBufferRange([[newBufferRange.start.row, 0], newBufferRange.start])
+      unless NonWhitespaceRegExp.test(precedingText)
+        @editor.autoIndentBufferRow(newBufferRange.getRows()[0])
+      @editor.autoIndentBufferRow(row) for row, i in newBufferRange.getRows() when i > 0
     else if options.autoIndentNewline and text == '\n'
       currentIndentation = @editor.indentationForBufferRow(newBufferRange.start.row)
       @editor.autoIndentBufferRow(newBufferRange.end.row, preserveLeadingWhitespace: true)
       if @editor.indentationForBufferRow(newBufferRange.end.row) < currentIndentation
         @editor.setIndentationForBufferRow(newBufferRange.end.row, currentIndentation)
-    else if options.autoDecreaseIndent and /\S/.test text
+    else if options.autoDecreaseIndent and NonWhitespaceRegExp.test(text)
       @editor.autoDecreaseIndentForBufferRow(newBufferRange.start.row)
 
     newBufferRange
@@ -552,20 +558,21 @@ class Selection extends Model
   #   current selection. (default: false)
   copy: (maintainClipboard=false) ->
     return if @isEmpty()
-    text = @editor.buffer.getTextInRange(@getBufferRange())
+    selectionText = @editor.buffer.getTextInRange(@getBufferRange())
+    selectionIndentation = @editor.indentationForBufferRow(@getBufferRange().start.row)
+
     if maintainClipboard
       {text: clipboardText, metadata} = atom.clipboard.readWithMetadata()
-
-      if metadata?.selections?
-        metadata.selections.push(text)
-      else
-        metadata = { selections: [clipboardText, text] }
-
-      text = "" + (clipboardText) + "\n" + text
+      metadata ?= {}
+      unless metadata.selections?
+        metadata.selections = [{
+          text: clipboardText,
+          indentBasis: metadata.indentBasis,
+        }]
+      metadata.selections.push(text: selectionText, indentBasis: selectionIndentation)
+      atom.clipboard.write([clipboardText, selectionText].join("\n"), metadata)
     else
-      metadata = { indentBasis: @editor.indentationForBufferRow(@getBufferRange().start.row) }
-
-    atom.clipboard.write(text, metadata)
+      atom.clipboard.write(selectionText, {indentBasis: selectionIndentation})
 
   # Public: Creates a fold containing the current selection.
   fold: ->

src/space-pen-extensions.coffee

@@ -7,7 +7,7 @@ Subscriber.includeInto(SpacePen.View)
 jQuery = SpacePen.jQuery
 JQueryCleanData = jQuery.cleanData
 jQuery.cleanData = (elements) ->
-  jQuery(element).view()?.unsubscribe() for element in elements
+  jQuery(element).view()?.unsubscribe?() for element in elements
   JQueryCleanData(elements)
 
 SpacePenCallRemoveHooks = SpacePen.callRemoveHooks
@@ -20,13 +20,16 @@ NativeEventNames.add(nativeEvent) for nativeEvent in ["blur", "focus", "focusin"
 "focusout", "load", "resize", "scroll", "unload", "click", "dblclick", "mousedown",
 "mouseup", "mousemove", "mouseover", "mouseout", "mouseenter", "mouseleave", "change",
 "select", "submit", "keydown", "keypress", "keyup", "error", "contextmenu", "textInput",
-"textinput"]
+"textinput", "beforeunload"]
 
 JQueryTrigger = jQuery.fn.trigger
 jQuery.fn.trigger = (eventName, data) ->
   if NativeEventNames.has(eventName) or typeof eventName is 'object'
     JQueryTrigger.call(this, eventName, data)
   else
+    data ?= {}
+    data.jQueryTrigger = true
+
     for element in this
       atom.commands.dispatch(element, eventName, data)
     this
@@ -78,6 +81,18 @@ jQuery.event.remove = (elem, types, originalHandler, selector, mappedTypes) ->
     handler = HandlersByOriginalHandler.get(originalHandler) ? originalHandler
   JQueryEventRemove(elem, types, handler, selector, mappedTypes, RemoveEventListener if atom?.commands?)
 
+JQueryContains = jQuery.contains
+
+jQuery.contains = (a, b) ->
+  shadowRoot = null
+  currentNode = b
+  while currentNode
+    if currentNode instanceof ShadowRoot and a.contains(currentNode.host)
+      return true
+    currentNode = currentNode.parentNode
+
+  JQueryContains.call(this, a, b)
+
 tooltipDefaults =
   delay:
     show: 1000