Upgrade to gists@0.11.0 for spec fixes

I added some things to tooltips that we need. Namely, fitting them within the viewport.

.gitattributes

@@ -0,0 +1,8 @@
+# Specs depend on character counts, if we don't specify the line endings the
+# fixtures will vary depending on platform
+spec/fixtures/**/*.js text eol=lf
+spec/fixtures/**/*.coffee text eol=lf
+spec/fixtures/**/*.less text eol=lf
+spec/fixtures/**/*.css text eol=lf
+spec/fixtures/**/*.txt text eol=lf
+spec/fixtures/dir/**/* text eol=lf

.github

@@ -1,2 +0,0 @@
-[docs]
-title = The Guide to Atom

.gitignore

@@ -5,6 +5,8 @@
 .nvm-version
 node_modules
 npm-debug.log
+debug.log
 /tags
 /atom-shell/
 docs/output
+spec/fixtures/evil-files/

.gitmodules

@@ -1,6 +1,3 @@
-[submodule "vendor/bootstrap"]
-	path = vendor/bootstrap
-	url = https://github.com/twbs/bootstrap
 [submodule "vendor/apm"]
 	path = vendor/apm
 	url = https://github.com/atom/apm.git

.nakignore

@@ -1,4 +0,0 @@
-tags
-node_modules
-docs/api
-.git

CHANGELOG.md

@@ -1,94 +0,0 @@
-* Fixed: Package generator package not opening window to generated package
-
-* Fixed: Precompile bootstrap.less for faster startup
-
-* Fixed: Save sometimes failing from an editor that was split
-* Fixed: Search results not appearing when set to exclude ignores
-
-* Fixed: Status bar and gutter displaying incorrect Git status information
-* Fixed: Packages not installing from the Settings view
-* Fixed: Spec runner now works from a released build
-* Fixed: Literate CoffeeScript not syntax highlighting correctly
-
-* Added: Soft wrap and tab length can now be set in the settings view
-* Fixed: Python import statements not syntax highlighting correctly
-
-* Added: Terminal package now bundled by default, open with ctrl-`
-* Fixed: Fuzzy finder not showing results for files at a certain depth
-* Fixed: Atom > Preferences... menu not opening settings in focused window
-
-* Fixed: Atom failing to launch if the theme being used was not found
-
-* Improved: Theme changes now immediately take effect
-* Fixed: Wrap in quotes/parens now works in split panes
-* Improved: Autocomplete now includes CSS property names and values
-* Improved: Settings GUI is now a pane item
-* Added: Support package filtering in Settings GUI
-* Added: Dynamically load all config options in the Settings GUI
-* Added: Ability to bookmark lines and navigate bookmarks
-* Fixed: Error when inserting newlines in CSS
-* Fixed: Folding all will fold comments as well
-* Added: Ability to fold all code at a given indentation level
-
-* Improved: cmd-n now opens a new tab and cmd-shift-n now opens a new window.
-* Added: Inspect Element context menu
-* Fixed: Save As dialog now defaults to directory path of current editor
-* Fixed: Using toggle comment shortcut respects indentation level
-
-* Fixed: Search never completing in the command panel
-
-* Fixed: cmd-n now works when no windows are open
-
-* Fixed: Error selecting a grammar for an untitled editor
-
-* Added: j/k now can be used to navigate the tree view and archive editor
-
-* Fixed: Atom can now be launched when ~/.atom/config.cson doesn't exist
-* Added: Initial collaboration sessions
-* Fixed: Empty lines being deleted via uppercase/downcase command
-* Fixed: Keybindings not working when using non-English keyboard language
-* Fixed: cmd-shift-p and cmd-alt-w not doing anything when pressed
-
-* Improved: Use grunt (instead of rake) for build system
-* Fixed: Java files not syntax highlighting correctly.
-* Fixed: LESS/CSS now indents properly after hitting enter.
-* Added: Support for browsing .tar.gz and .zip files in the editor
-* Added: TODO/FIXME/CHANGED are now highlighted in comments.
-* Fixed: Full screen state of windows is now persisted across restarts.
-* Added: Makefile syntax highlighting now included.
-* Added: Open fuzzy finder to specific line using colon suffix (i.e ':25')
-* Fixed: Issues deleting and moving over certain UTF-8 characters
-* Fixed: Tree view not properly highlighting or revealing for open images.
-* Added: Packages can now be installed from the configuration UI.
-* Fixed: .git folder now ignored by default when searching
-
-* Fixed: Not being able to disable packages from configuration UI.
-* Fixed: Fuzzy finder showing poor results for entered text
-* Improved: App icon
-
-* Fixed: Fuzzy finder being empty sometimes
-
-* Improved: App icon
-* Fixed: End of line invisibles rendering incorrectly with the indent guide
-* Fixed: Updates not installing automatically on restart
-* Fixed: Wrap guide not displaying
-* Fixed: Error when saving with the markdown preview focused
-
-* Fixed: Atom always running in dev mode
-* Fixed: Crash when running in dev mode without a path to the Atom source
-
-* Fixed: Freeze when editing a RoR class
-* Added: meta-N to open a new untitled editor in the current window
-
-* Fixed: Styling in command logger
-* Added: XML and Ruby syntax highlighting in Markdown files
-* Fixed: Error when editing files in a HEAD-less Git repository
-
-* Fixed: Invisible characters not being visible when enabled
-* Added: Editor gutter now displays Git status for lines
-
-* Improved: Startup time
-* Added: SQL bundle now included
-* Added: PEG.js bundle now included
-* Added: Hyperlinks can now be opened with ctrl-O
-* Fixed: PHP syntax highlighting

CONTRIBUTING.md

@@ -10,25 +10,29 @@
   * Check the Dev tools (`alt-cmd-i`) for errors and stack traces to include
 
 ## Code
-  * Follow the [JavaScript](https://github.com/styleguide/javascript),
-    [CSS](https://github.com/styleguide/css),
-    and [Objective-C](https://github.com/github/objective-c-conventions)
-    styleguides
+  * Follow the [JavaScript](https://github.com/styleguide/javascript) and
+    [CSS](https://github.com/styleguide/css) styleguides
   * Include thoughtfully worded [Jasmine](http://pivotal.github.com/jasmine/)
     specs
-  * Style new elements in both the light and dark default themes when
-    appropriate
   * Add 3rd-party packages as a `package.json` dependency
   * Commit messages are in the present tense
   * Commit messages that improve the format of the code start with :lipstick:
   * Commit messages that improve the performance start with :racehorse:
   * Commit messages that remove memory leaks start with :non-potable_water:
+  * Commit messages that improve documentation start with :memo:
   * Files end with a newline
   * Class variables and methods should be in the following order:
     * Class variables (variables starting with a `@`)
     * Class methods (methods starting with a `@`)
     * Instance variables
     * Instance methods
+  * Beware of platform differences
+    * The home directory is `process.env.USERPROFILE` on Windows, while on OS X
+      and Linux it's `process.env.HOME`
+    * Path separator is `\` on Windows, and is `/` on OS X and Linux, so use
+      `path.join` to concatenate filenames
+    * Temporary directory is not `/tmp` on Windows, use `os.tmpdir()` when
+      possible
 
 ## Philosophy
 

Gruntfile.coffee

@@ -1,19 +1,35 @@
 fs = require 'fs'
 path = require 'path'
+os = require 'os'
 
 fm = require 'json-front-matter'
-_ = require 'underscore'
+_ = require 'underscore-plus'
 
 packageJson = require './package.json'
 
 module.exports = (grunt) ->
-  appName = 'Atom.app'
+  if not grunt.option('verbose')
+    grunt.log.writeln = (args...) -> grunt.log
+    grunt.log.write = (args...) -> grunt.log
+
   [major, minor, patch] = packageJson.version.split('.')
-  buildDir = grunt.option('build-dir') ? '/tmp/atom-build'
-  shellAppDir = path.join(buildDir, appName)
-  contentsDir = path.join(shellAppDir, 'Contents')
-  appDir = path.join(contentsDir, 'Resources', 'app')
-  installDir = path.join('/Applications', appName)
+  if process.platform is 'win32'
+    appName = 'Atom'
+    tmpDir = os.tmpdir()
+    installRoot = process.env.ProgramFiles
+    buildDir = grunt.option('build-dir') ? path.join(tmpDir, 'atom-build')
+    shellAppDir = path.join(buildDir, appName)
+    appDir = path.join(shellAppDir, 'resources', 'app')
+  else
+    appName = 'Atom.app'
+    tmpDir = '/tmp'
+    installRoot = '/Applications'
+    buildDir = grunt.option('build-dir') ? path.join(tmpDir, 'atom-build')
+    shellAppDir = path.join(buildDir, appName)
+    contentsDir = path.join(shellAppDir, 'Contents')
+    appDir = path.join(contentsDir, 'Resources', 'app')
+
+  installDir = path.join(installRoot, appName)
 
   coffeeConfig =
     options:
@@ -22,6 +38,7 @@ module.exports = (grunt) ->
       expand: true
       src: [
         'src/**/*.coffee'
+        'exports/**/*.coffee'
         'static/**/*.coffee'
       ]
       dest: appDir
@@ -32,38 +49,41 @@ module.exports = (grunt) ->
       paths: [
         'static/variables'
         'static'
-        'vendor'
       ]
     glob_to_multiple:
       expand: true
       src: [
-        'src/**/*.less'
         'static/**/*.less'
-        'themes/**/*.less'
-        'vendor/bootstrap/less/bootstrap.less'
       ]
       dest: appDir
       ext: '.css'
 
+  prebuildLessConfig =
+    src: [
+      'static/**/*.less'
+      'node_modules/bootstrap/less/bootstrap.less'
+    ]
+
   csonConfig =
     options:
       rootObject: true
     glob_to_multiple:
       expand: true
       src: [
+        'menus/*.cson'
         'keymaps/*.cson'
         'static/**/*.cson'
-        'themes/**/*.cson'
       ]
       dest: appDir
       ext: '.json'
 
   for child in fs.readdirSync('node_modules') when child isnt '.bin'
     directory = path.join('node_modules', child)
-    {engines} = grunt.file.readJSON(path.join(directory, 'package.json'))
+    {engines, theme} = grunt.file.readJSON(path.join(directory, 'package.json'))
     if engines?.atom?
       coffeeConfig.glob_to_multiple.src.push("#{directory}/**/*.coffee")
       lessConfig.glob_to_multiple.src.push("#{directory}/**/*.less")
+      prebuildLessConfig.src.push("#{directory}/**/*.less") unless theme
       csonConfig.glob_to_multiple.src.push("#{directory}/**/*.cson")
 
   grunt.initConfig
@@ -75,6 +95,8 @@ module.exports = (grunt) ->
 
     less: lessConfig
 
+    'prebuild-less': prebuildLessConfig
+
     cson: csonConfig
 
     coffeelint:
@@ -83,8 +105,11 @@ module.exports = (grunt) ->
           level: 'error'
         max_line_length:
           level: 'ignore'
+        indentation:
+          level: 'ignore'
       src: [
         'dot-atom/**/*.coffee'
+        'exports/**/*.coffee'
         'src/**/*.coffee'
         'tasks/**/*.coffee'
         'Gruntfile.coffee'
@@ -96,6 +121,7 @@ module.exports = (grunt) ->
     csslint:
       options:
         'adjoining-classes': false
+        'duplicate-background-images': false
         'box-model': false
         'box-sizing': false
         'bulletproof-font-face': false
@@ -115,13 +141,11 @@ module.exports = (grunt) ->
         'vendor-prefix': false
       src: [
         'static/**/*.css'
-        'themes/**/*.css'
       ]
 
     lesslint:
       src: [
         'static/**/*.less'
-        'themes/**/*.less'
       ]
 
     markdown:
@@ -146,21 +170,12 @@ module.exports = (grunt) ->
 
     shell:
       'kill-atom':
-        command: 'pkill Atom'
+        command: 'pkill -9 Atom'
         options:
           stdout: false
           stderr: false
           failOnError: false
 
-      test:
-        command: "#{path.join(contentsDir, 'MacOS', 'Atom')} --test --resource-path=#{__dirname}"
-        options:
-          stdout: true
-          stderr: true
-          callback: (error, stdout, stderr, callback) ->
-            grunt.warn('Specs failed') if error?
-            callback()
-
   grunt.loadNpmTasks('grunt-coffeelint')
   grunt.loadNpmTasks('grunt-lesslint')
   grunt.loadNpmTasks('grunt-cson')
@@ -171,10 +186,10 @@ module.exports = (grunt) ->
   grunt.loadNpmTasks('grunt-shell')
   grunt.loadTasks('tasks')
 
-  grunt.registerTask('compile', ['coffee', 'less', 'cson'])
+  grunt.registerTask('compile', ['coffee', 'prebuild-less', 'cson'])
   grunt.registerTask('lint', ['coffeelint', 'csslint', 'lesslint'])
-  grunt.registerTask('test', ['shell:kill-atom', 'shell:test'])
-  grunt.registerTask('ci', ['lint', 'update-atom-shell', 'build', 'set-development-version', 'test'])
+  grunt.registerTask('test', ['shell:kill-atom', 'run-specs'])
+  grunt.registerTask('ci', ['update-atom-shell', 'build', 'set-development-version', 'lint', 'test'])
   grunt.registerTask('deploy', ['partial-clean', 'update-atom-shell', 'build', 'codesign'])
   grunt.registerTask('docs', ['markdown:guides', 'build-docs'])
   grunt.registerTask('default', ['update-atom-shell', 'build', 'set-development-version', 'install'])

README.md

@@ -2,7 +2,7 @@
 
 ![atom](https://s3.amazonaws.com/speakeasy/apps/icons/27/medium/7db16e44-ba57-11e2-8c6f-981faf658e00.png)
 
-Check out our [guides](https://atom-docs.githubapp.com/v20.0/index.html) and [API documentation](https://atom-docs.githubapp.com/v20.0/api/index.html).
+Check out our [guides](https://www.atom.io/docs/latest/) and [API documentation](https://www.atom.io/docs/api/v34.0.0/api/)
 
 ## Installing
 
@@ -15,6 +15,7 @@ It will automatically update when a new release is available.
 ### Requirements
 
   * Mountain Lion
+    * Looking for Windows support? Read [here][building].
   * Boxen (Obviously Atom won't release with this requirement)
 
 ### Installation
@@ -24,3 +25,6 @@ It will automatically update when a new release is available.
   2. `cd ~/github/atom`
 
   3. `script/build`
+
+
+[building]: https://github.com/atom/atom/blob/master/docs/building-atom.md

atom.sh

@@ -1,5 +1,5 @@
 #!/bin/sh
-ATOM_PATH=/Applications/Atom.app
+ATOM_PATH=${ATOM_PATH-/Applications/Atom.app}
 ATOM_BINARY=$ATOM_PATH/Contents/MacOS/Atom
 
 if [ ! -d $ATOM_PATH ]; then sleep 5; fi # Wait for Atom to reappear, Sparkle may be replacing it.
@@ -9,7 +9,7 @@ if [ ! -d $ATOM_PATH ]; then
   exit 1
 fi
 
-while getopts ":whvft-:" opt; do
+while getopts ":wtfvhs-:" opt; do
   case "$opt" in
     -)
       case "${OPTARG}" in
@@ -32,6 +32,7 @@ done
 
 if [ $EXPECT_OUTPUT ]; then
   $ATOM_BINARY --executed-from="$(pwd)" --pid=$$ $@
+  exit $?
 else
   open -a $ATOM_PATH -n --args --executed-from="$(pwd)" --pid=$$ $@
 fi

benchmark/benchmark-bootstrap.coffee

@@ -1,5 +1,13 @@
-require 'atom'
-{runSpecSuite} = require 'jasmine-helper'
+require '../src/window'
+Atom = require '../src/atom'
+atom = new Atom()
+atom.show() unless atom.getLoadSettings().exitWhenDone
+window.atom = atom
+
+{runSpecSuite} = require '../spec/jasmine-helper'
+
+atom.openDevTools()
 
 document.title = "Benchmark Suite"
-runSpecSuite("benchmark-suite", true)
+benchmarkSuite = require.resolve('./benchmark-suite')
+runSpecSuite(benchmarkSuite, true)

benchmark/benchmark-helper.coffee

@@ -1,11 +1,9 @@
 require '../spec/spec-helper'
 
-$ = require 'jquery'
-_ = require 'underscore'
-{Point} = require 'telepath'
-Project = require 'project'
-fsUtils = require 'fs-utils'
-TokenizedBuffer = require 'tokenized-buffer'
+path = require 'path'
+{$, _, Point, fs} = require 'atom'
+Project = require '../src/project'
+TokenizedBuffer = require '../src/tokenized-buffer'
 
 defaultCount = 100
 window.pbenchmark = (args...) -> window.benchmark(args..., profile: true)
@@ -13,7 +11,7 @@ window.fbenchmark = (args...) -> window.benchmark(args..., focused: true)
 window.fpbenchmark = (args...) -> window.benchmark(args..., profile: true, focused: true)
 window.pfbenchmark = window.fpbenchmark
 
-window.benchmarkFixturesProject = new Project(fsUtils.resolveOnLoadPath('benchmark/fixtures'))
+window.benchmarkFixturesProject = new Project(path.join(__dirname, 'fixtures'))
 
 beforeEach ->
   window.project = window.benchmarkFixturesProject
@@ -75,8 +73,8 @@ window.clickEvent = (properties={}) ->
 
 window.mouseEvent = (type, properties) ->
   if properties.point
-    {point, editor} = properties
-    {top, left} = @pagePixelPositionForPoint(editor, point)
+    {point, editorView} = properties
+    {top, left} = @pagePixelPositionForPoint(editorView, point)
     properties.pageX = left + 1
     properties.pageY = top + 1
   properties.originalEvent ?= {detail: 1}
@@ -88,14 +86,14 @@ window.mousedownEvent = (properties={}) ->
 window.mousemoveEvent = (properties={}) ->
   window.mouseEvent('mousemove', properties)
 
-window.pagePixelPositionForPoint = (editor, point) ->
+window.pagePixelPositionForPoint = (editorView, point) ->
   point = Point.fromObject point
-  top = editor.lines.offset().top + point.row * editor.lineHeight
-  left = editor.lines.offset().left + point.column * editor.charWidth - editor.lines.scrollLeft()
+  top = editorView.lines.offset().top + point.row * editorView.lineHeight
+  left = editorView.lines.offset().left + point.column * editorView.charWidth - editorView.lines.scrollLeft()
   { top, left }
 
-window.setEditorWidthInChars = (editor, widthInChars, charWidth=editor.charWidth) ->
-  editor.width(charWidth * widthInChars + editor.lines.position().left)
+window.seteditorViewWidthInChars = (editorView, widthInChars, charWidth=editorView.charWidth) ->
+  editorView.width(charWidth * widthInChars + editorView.lines.position().left)
 
 $.fn.resultOfTrigger = (type) ->
   event = $.Event(type)

benchmark/benchmark-suite.coffee

@@ -1,110 +1,217 @@
 require './benchmark-helper'
-$ = require 'jquery'
-_ = require 'underscore'
-TokenizedBuffer = require 'tokenized-buffer'
-RootView = require 'root-view'
+{$, _, RootView} = require 'atom'
+TokenizedBuffer = require '../src/tokenized-buffer'
 
-describe "editor.", ->
-  editor = null
+describe "editorView.", ->
+  editorView = null
 
   beforeEach ->
     window.rootViewParentSelector = '#jasmine-content'
     window.rootView = new RootView
     window.rootView.attachToDom()
 
-
     rootView.width(1024)
     rootView.height(768)
-    rootView.open() # open blank editor
-    editor = rootView.getActiveView()
+    rootView.openSync()
+    editorView = rootView.getActiveView()
 
   afterEach ->
-    if editor.pendingDisplayUpdate
+    if editorView.pendingDisplayUpdate
       waitsFor "editor to finish rendering", (done) ->
-        editor.on 'editor:display-updated', done
+        editorView.on 'editor:display-updated', done
 
   describe "keymap.", ->
     event = null
 
     beforeEach ->
-      event = keydownEvent('x', target: editor.hiddenInput[0])
+      event = keydownEvent('x', target: editorView.hiddenInput[0])
 
     benchmark "keydown-event-with-no-binding", 10, ->
       keymap.handleKeyEvent(event)
 
   describe "opening-buffers.", ->
     benchmark "300-line-file.", ->
-      buffer = project.bufferForPath('medium.coffee')
+      buffer = project.bufferForPathSync('medium.coffee')
 
   describe "empty-file.", ->
     benchmark "insert-delete", ->
-      editor.insertText('x')
-      editor.backspace()
+      editorView.insertText('x')
+      editorView.backspace()
 
   describe "300-line-file.", ->
     beforeEach ->
-      rootView.open('medium.coffee')
+      rootView.openSync('medium.coffee')
 
     describe "at-begining.", ->
       benchmark "insert-delete", ->
-        editor.insertText('x')
-        editor.backspace()
+        editorView.insertText('x')
+        editorView.backspace()
 
       benchmark "insert-delete-rehighlight", ->
-        editor.insertText('"')
-        editor.backspace()
+        editorView.insertText('"')
+        editorView.backspace()
 
     describe "at-end.", ->
       beforeEach ->
-        editor.moveCursorToBottom()
+        editorView.moveCursorToBottom()
 
       benchmark "insert-delete", ->
-        editor.insertText('"')
-        editor.backspace()
+        editorView.insertText('"')
+        editorView.backspace()
+
+    describe "empty-vs-set-innerHTML.", ->
+      [firstRow, lastRow] = []
+      beforeEach ->
+        firstRow = editorView.getFirstVisibleScreenRow()
+        lastRow = editorView.getLastVisibleScreenRow()
+
+      benchmark "build-gutter-html.", 1000, ->
+        editorView.gutter.renderLineNumbers(null, firstRow, lastRow)
+
+      benchmark "set-innerHTML.", 1000, ->
+        editorView.gutter.renderLineNumbers(null, firstRow, lastRow)
+        editorView.gutter.lineNumbers[0].innerHtml = ''
+
+      benchmark "empty.", 1000, ->
+        editorView.gutter.renderLineNumbers(null, firstRow, lastRow)
+        editorView.gutter.lineNumbers.empty()
+
+    describe "positionLeftForLineAndColumn.", ->
+      line = null
+      beforeEach ->
+        editorView.scrollTop(2000)
+        editorView.resetDisplay()
+        line = editorView.lineElementForScreenRow(106)[0]
+
+      describe "one-line.", ->
+        beforeEach ->
+          editorView.clearCharacterWidthCache()
+
+        benchmark "uncached", 5000, ->
+          editorView.positionLeftForLineAndColumn(line, 106, 82)
+          editorView.clearCharacterWidthCache()
+
+        benchmark "cached", 5000, ->
+          editorView.positionLeftForLineAndColumn(line, 106, 82)
+
+      describe "multiple-lines.", ->
+        [firstRow, lastRow] = []
+        beforeEach ->
+          firstRow = editorView.getFirstVisibleScreenRow()
+          lastRow = editorView.getLastVisibleScreenRow()
+
+        benchmark "cache-entire-visible-area", 100, ->
+          for i in [firstRow..lastRow]
+            line = editorView.lineElementForScreenRow(i)[0]
+            editorView.positionLeftForLineAndColumn(line, i, Math.max(0, editorView.lineLengthForBufferRow(i)))
+
+    describe "text-rendering.", ->
+      beforeEach ->
+        editorView.scrollTop(2000)
+
+      benchmark "resetDisplay", 50, ->
+        editorView.resetDisplay()
+
+      benchmark "htmlForScreenRows", 1000, ->
+        lastRow = editorView.getLastScreenRow()
+        editorView.htmlForScreenRows(0, lastRow)
+
+      benchmark "htmlForScreenRows.htmlParsing", 50, ->
+        lastRow = editorView.getLastScreenRow()
+        html = editorView.htmlForScreenRows(0, lastRow)
+
+        div = document.createElement('div')
+        div.innerHTML = html
+
+    describe "gutter-api.", ->
+      describe "getLineNumberElementsForClass.", ->
+        beforeEach ->
+          editorView.gutter.addClassToLine(20, 'omgwow')
+          editorView.gutter.addClassToLine(40, 'omgwow')
+
+        benchmark "DOM", 20000, ->
+          editorView.gutter.getLineNumberElementsForClass('omgwow')
+
+      benchmark "getLineNumberElement.DOM", 20000, ->
+        editorView.gutter.getLineNumberElement(12)
+
+      benchmark "toggle-class", 2000, ->
+        editorView.gutter.addClassToLine(40, 'omgwow')
+        editorView.gutter.removeClassFromLine(40, 'omgwow')
+
+      describe "find-then-unset.", ->
+        classes = ['one', 'two', 'three', 'four']
+
+        benchmark "single-class", 200, ->
+          editorView.gutter.addClassToLine(30, 'omgwow')
+          editorView.gutter.addClassToLine(40, 'omgwow')
+          editorView.gutter.removeClassFromAllLines('omgwow')
+
+        benchmark "multiple-class", 200, ->
+          editorView.gutter.addClassToLine(30, 'one')
+          editorView.gutter.addClassToLine(30, 'two')
+
+          editorView.gutter.addClassToLine(40, 'two')
+          editorView.gutter.addClassToLine(40, 'three')
+          editorView.gutter.addClassToLine(40, 'four')
+
+          for klass in classes
+            editorView.gutter.removeClassFromAllLines(klass)
+
+    describe "line-htmlification.", ->
+      div = null
+      html = null
+      beforeEach ->
+        lastRow = editorView.getLastScreenRow()
+        html = editorView.htmlForScreenRows(0, lastRow)
+        div = document.createElement('div')
+
+      benchmark "setInnerHTML", 1, ->
+        div.innerHTML = html
 
   describe "9000-line-file.", ->
     benchmark "opening.", 5, ->
-      rootView.open('huge.js')
+      rootView.openSync('huge.js')
 
     describe "after-opening.", ->
       beforeEach ->
-        rootView.open('huge.js')
+        rootView.openSync('huge.js')
 
       benchmark "moving-to-eof.", 1, ->
-        editor.moveCursorToBottom()
+        editorView.moveCursorToBottom()
 
       describe "on-first-line.", ->
         benchmark "inserting-newline", 5, ->
-          editor.insertNewline()
+          editorView.insertNewline()
 
       describe "on-last-visible-line.", ->
         beforeEach ->
-          editor.setCursorScreenPosition([editor.getLastVisibleScreenRow(), 0])
+          editorView.setCursorScreenPosition([editorView.getLastVisibleScreenRow(), 0])
 
         benchmark "move-down-and-scroll", 300, ->
-          editor.trigger 'move-down'
+          editorView.trigger 'move-down'
 
       describe "at-eof.", ->
         endPosition = null
 
         beforeEach ->
-          editor.moveCursorToBottom()
-          endPosition = editor.getCursorScreenPosition()
+          editorView.moveCursorToBottom()
+          endPosition = editorView.getCursorScreenPosition()
 
         benchmark "move-to-beginning-of-word", ->
-          editor.moveCursorToBeginningOfWord()
-          editor.setCursorScreenPosition(endPosition)
+          editorView.moveCursorToBeginningOfWord()
+          editorView.setCursorScreenPosition(endPosition)
 
         benchmark "insert", ->
-          editor.insertText('x')
+          editorView.insertText('x')
 
 describe "TokenizedBuffer.", ->
   describe "coffee-script-grammar.", ->
     [languageMode, buffer] = []
 
     beforeEach ->
-      editSession = benchmarkFixturesProject.open('medium.coffee')
-      { languageMode, buffer } = editSession
+      editor = benchmarkFixturesProject.openSync('medium.coffee')
+      { languageMode, buffer } = editor
 
     benchmark "construction", 20, ->
       new TokenizedBuffer(buffer, { languageMode, tabLength: 2})

docs/building-atom.md

@@ -0,0 +1,34 @@
+## Building Atom
+
+These guide is meant only for users who wish to help develop atom core,
+if you're just interested in using atom you should just [download
+atom][download].
+
+## OSX
+
+* Use Mountain Lion
+* Install the latest node 0.10.x release (32bit preferable)
+* Clone [atom][atom-git] to `~/github/atom`
+* Run `~/github/atom/script/bootstrap`
+
+## Windows
+
+* Install [Visual C++ 2010 Express][win-vs2010]
+* Install the [latest 32bit Node 0.10.x][win-node]
+* Install the [latest Python 2.7.x][win-python]
+* Install [GitHub for Windows][win-github]
+* Clone [atom/atom][atom-git] to `C:\Users\<user>\github\atom\`
+* Add `C:\Python27;C:\Program Files\nodejs;C:\Users\<user>\github\atom\node_modules\`
+  to your PATH
+* Set ATOM_ACCESS_TOKEN to your oauth2 credentials (run `security -q
+  find-generic-password -ws 'GitHub API Token'` on OSX to get your
+  credentials).
+* Use the Windows GitHub shell and cd into `C:\Users\<user>\github\atom`
+* Run `script\bootstrap`
+
+[download]: http://www.atom.io
+[win-node]: http://nodejs.org/download/
+[win-python]: http://www.python.org/download/
+[win-github]: http://windows.github.com/
+[win-vs2010]: http://www.microsoft.com/visualstudio/eng/products/visual-studio-2010-express
+[atom-git]: https://github.com/atom/atom/

docs/creating-a-package.md

@@ -1,53 +1,56 @@
-{{{
-"title": "Creating a Package"
-}}}
+# Creating Packages
 
-# Authoring Packages
-
-Packages are at the core of Atom. Nearly everything outside of the main editor manipulation
-is handled by a package. That includes "core" pieces like the command panel, status bar,
-file tree, and more.
+Packages are at the core of Atom. Nearly everything outside of the main editor
+is handled by a package. That includes "core" pieces like the [file tree][file-tree],
+[status bar][status-bar], [syntax highlighting][cs-syntax], and more.
 
 A package can contain a variety of different resource types to change Atom's
-behavior. The basic package layout is as follows (though not every package will
-have all of these directories):
+behavior. The basic package layout is as follows:
 
 ```text
 my-package/
-  lib/
-  stylesheets/
-  keymaps/
-  snippets/
   grammars/
+  keymaps/
+  lib/
+  menus/
   spec/
-  package.json
+  snippets/
+  stylesheets/
   index.coffee
+  package.json
 ```
 
+Not every package will have (or need) all of these directories.
+
+We have [a tutorial on creating your first package][first-package].
+
 ## package.json
 
-Similar to [npm packages][npm], Atom packages
-can contain a _package.json_ file in their top-level directory. This file contains metadata
-about the package, such as the path to its "main" module, library dependencies,
-and manifests specifying the order in which its resources should be loaded.
+Similar to [npm packages][npm], Atom packages contain a _package.json_ file
+in their top-level directory. This file contains metadata about the package,
+such as the path to its "main" module, library dependencies, and manifests
+specifying the order in which its resources should be loaded.
 
-In addition to the regular [npm package.json keys](https://npmjs.org/doc/json.html)
-available, Atom package.json files have their own additions.
+In addition to the regular [npm package.json keys][npm-keys] available, Atom
+package.json files have their own additions.
 
 - `main` (**Required**): the path to the CoffeeScript file that's the entry point
 to your package
 - `stylesheets` (**Optional**): an Array of Strings identifying the order of the
-stylesheets your package needs to load. If not specified, stylesheets in the _stylesheets_
-directory are added alphabetically.
+stylesheets your package needs to load. If not specified, stylesheets in the
+_stylesheets_ directory are added alphabetically.
 - `keymaps`(**Optional**): an Array of Strings identifying the order of the
-key mappings your package needs to load. If not specified, mappings in the _keymaps_
-directory are added alphabetically.
+key mappings your package needs to load. If not specified, mappings in the
+_keymaps_ directory are added alphabetically.
+- `menus`(**Optional**): an Array of Strings identifying the order of
+the menu mappings your package needs to load. If not specified, mappings
+in the _keymap_ directory are added alphabetically.
 - `snippets` (**Optional**): an Array of Strings identifying the order of the
-snippets your package needs to load. If not specified, snippets in the _snippets_
-directory are added alphabetically.
+snippets your package needs to load. If not specified, snippets in the
+_snippets_ directory are added alphabetically.
 - `activationEvents` (**Optional**): an Array of Strings identifying events that
-trigger your package's activation. You can delay the loading of your package until
-one of these events is trigged.
+trigger your package's activation. You can delay the loading of your package
+until one of these events is trigged.
 
 ## Source Code
 
@@ -83,20 +86,22 @@ you don't need to worry because that's getting torn down anyway.
 
 ### Simple Package Code
 
+Your directory would look like this:
+
 ```text
 my-package/
-  package.json # optional
+  package.json
   index.coffee
   lib/
     my-package.coffee
 ```
 
-`index.coffee`:
+`index.coffee` might be:
 ```coffeescript
 module.exports = require "./lib/my-package"
 ```
 
-`my-package/my-package.coffee`:
+`my-package/my-package.coffee` might start:
 ```coffeescript
 module.exports =
   activate: (rootView, state) -> # ...
@@ -104,41 +109,123 @@ module.exports =
   serialize: -> # ...
 ```
 
-Beyond this simple contract, your package has full access to Atom's internal
-API. Anything we call internally, you can call as well. Be aware that since we
-are early in development, APIs are subject to change and we have not yet
-established clear boundaries between what is public and what is private. Also,
-please collaborate with us if you need an API that doesn't exist. Our goal is
-to build out Atom's API organically based on the needs of package authors like
-you.
-
-See [Atom's built-in packages](https://github.com/atom/atom/)
-for examples of Atom's API in action.
+Beyond this simple contract, your package has access to Atom's API. Be aware
+that since we are early in development, APIs are subject to change and we have
+not yet established clear boundaries between what is public and what is private.
+Also, please collaborate with us if you need an API that doesn't exist. Our goal
+is to build out Atom's API organically based on the needs of package authors
+like you.
 
 ## Stylesheets
 
 Stylesheets for your package should be placed in the _stylesheets_ directory.
 Any stylesheets in this directory will be loaded and attached to the DOM when
-your package is activated. Stylesheets can be written as CSS or LESS.
+your package is activated. Stylesheets can be written as CSS or [LESS] (but LESS
+is recommended).
 
-An optional `stylesheets` array in your _package.json_ can list the stylesheets by
-name to specify a loading order; otherwise, stylesheets are loaded alphabetically.
+Ideally, you won't need much in the way of styling. We've provided a standard
+set of components which define both the colors and UI elements for any package
+that fits into Atom seamlessly. You can view all of Atom's UI components by opening
+the styleguide: open the command palette (`cmd-p`) and search for _styleguide_,
+or just type `cmd-ctrl-G`.
+
+If you _do_ need special styling, try to keep only structural styles in the package
+stylesheets. If you _must_ specify colors and sizing, these should be taken from
+the active theme's [ui-variables.less][ui-variables]. For more information, see the
+[theme variables docs][theme-variables]. If you follow this guideline, your package
+will look good out of the box with any theme!
+
+An optional `stylesheets` array in your _package.json_ can list the stylesheets
+by name to specify a loading order; otherwise, stylesheets are loaded
+alphabetically.
 
 ## Keymaps
 
-Keymaps are placed in the _keymaps_ subdirectory. It's a good idea to provide
-default keymaps for your extension, especially if you're also adding a new command.
+It's recommended that you provide key bindings for commonly used actions for
+your extension, especially if you're also adding a new command:
 
-By default, all keymaps are loaded in alphabetical order. An optional `keymaps`
-array in your _package.json_ can specify which keymaps to load and in what order.
+```coffeescript
+'.tree-view-scroller':
+  'ctrl-V': 'changer:magic'
+```
 
-See the [main keymaps documentation](../internals/keymaps.md) for more information on
+Keymaps are placed in the _keymaps_ subdirectory. By default, all keymaps are
+loaded in alphabetical order. An optional `keymaps` array in your _package.json_
+can specify which keymaps to load and in what order.
+
+
+Keybindings are executed by determining which element the keypress occured on. In
+the example above, `changer:magic` command is executed when pressing `ctrl-V` on
+the `.tree-view-scroller` element.
+
+See the [main keymaps documentation][keymaps] for more detailed information on
 how keymaps work.
 
+## Menus
+
+Menus are placed in the _menus_ subdirectory. By default, all menus are loaded
+in alphabetical order. An optional `menus` array in your _package.json_ can
+specify which menus to load and in what order.
+
+### Application Menu
+
+It's recommended that you create an application menu item for common actions
+with your package that aren't tied to a specific element:
+
+```coffee-script
+'menu': [
+  {
+    'label': 'Packages'
+    'submenu': [
+      {
+        'label': 'My Package'
+        'submenu': [
+          {
+            'label': 'Toggle'
+            'command': 'my-package:toggle'
+          }
+        ]
+      }
+    ]
+  }
+]
+```
+
+To add your own item to the application menu, simply create a top level `menu`
+key in any menu configuration file in _menus_. This can be a JSON or [CSON] file.
+
+The menu templates you specify are merged with all other templates provided
+by other packages in the order which they were loaded.
+
+### Context Menu
+
+It's recommended to specify a context menu item for commands that are linked to
+specific parts of the interface, like adding a file in the tree-view:
+
+```coffee-script
+'context-menu':
+  '.tree-view':
+    'Add file': 'tree-view:add-file'
+  '#root-view':
+    'Inspect Element': 'core:inspect'
+```
+
+To add your own item to the application menu simply create a top level
+`context-menu` key in any menu configuration file in _menus_. This can be a
+JSON or [CSON] file.
+
+Context menus are created by determining which element was selected and
+then adding all of the menu items whose selectors match that element (in
+the order which they were loaded). The process is then repeated for the
+elements until reaching the top of the DOM tree.
+
+In the example above, the `Add file` item will only appear when the focused item
+or one of its parents has the `tree-view` class applied to it.
+
 ## Snippets
 
-An extension can supply language snippets in the _snippets_ directory. These can
-be `.cson` or `.json` files. Here's an example:
+An extension can supply language snippets in the _snippets_ directory which
+allows the user to enter repetitive text quickly:
 
 ```coffeescript
 ".source.coffee .specs":
@@ -153,24 +240,26 @@ be `.cson` or `.json` files. Here's an example:
     """
 ```
 
-A snippets file contains scope selectors at its top level (`.source.coffee .spec`).
-Each scope selector contains a hash of snippets keyed by their name (`Expect`, `Describe`).
-Each snippet also specifies a `prefix` and a `body` key. The `prefix` represents
-the first few letters to type before hitting the `tab` key to autocomplete. The
-`body` defines the autofilled text. You can use placeholders like `$1`, `$2`, to indicate
-regions in the body the user can navigate to every time they hit `tab`.
+A snippets file contains scope selectors at its top level (`.source.coffee
+.spec`). Each scope selector contains a hash of snippets keyed by their name
+(`Expect`, `Describe`). Each snippet also specifies a `prefix` and a `body` key.
+The `prefix` represents the first few letters to type before hitting the `tab`
+key to autocomplete. The `body` defines the autofilled text. You can use
+placeholders like `$1`, `$2`, to indicate regions in the body the user can
+navigate to every time they hit `tab`.
 
-All files in the directory are automatically loaded, unless the
-_package.json_ supplies a `snippets` key. As with all scoped
-items, snippets loaded later take precedence over earlier snippets when two
-snippets match a scope with the same specificity.
+All files in the directory are automatically loaded, unless the _package.json_
+supplies a `snippets` key. As with all scoped items, snippets loaded later take
+precedence over earlier snippets when two snippets match a scope with the same
+specificity.
 
 ## Language Grammars
 
 If you're developing a new language grammar, you'll want to place your file in
 the _grammars_ directory. Each grammar is a pairing of two keys, `match` and
-`captures`. `match` is a regular expression identifying the pattern to highlight,
-while `captures` is an object representing what to do with each matching group.
+`captures`. `match` is a regular expression identifying the pattern to
+highlight, while `captures` is an object representing what to do with each
+matching group.
 
 For example:
 
@@ -195,14 +284,14 @@ To capture a single group, simply use the `name` key instead:
 }
 ```
 
-This indicates that Markdown header lines (`#`, `##`, `###`) should be applied with
-the `markup.heading.gfm` token.
+This indicates that Markdown header lines (`#`, `##`, `###`) should be applied
+with the `markup.heading.gfm` token.
 
 More information about the significance of these tokens can be found in
-[section 12.4 of the TextMate Manual](http://manual.macromates.com/en/language_grammars.html).
+[section 12.4 of the TextMate Manual][tm-tokens].
 
-Your grammar should also include a `filetypes` array, which is a list of file extensions
-your grammar supports:
+Your grammar should also include a `filetypes` array, which is a list of file
+extensions your grammar supports:
 
 ```coffeescript
 'fileTypes': [
@@ -214,280 +303,93 @@ your grammar supports:
 ]
 ```
 
+## Bundle External Resources
+
+It's common to ship external resources like images and fonts in the package, to
+make it easy to reference the resources in HTML or CSS, you can use the `atom`
+protocol URLs to load resources in the package.
+
+The URLs should be in the format of
+`atom://package-name/relative-path-to-package-of-resource`, for example, the
+`atom://image-view/images/transparent-background.gif` would be equivablent to
+`~/.atom/packages/image-view/images/transparent-background.gif`.
+
+You can also use the `atom` protocol URLs in themes.
+
 ## Writing Tests
 
-Your package **should** have tests, and if they're placed in the _spec_ directory,
-they can be run by Atom.
+Your package **should** have tests, and if they're placed in the _spec_
+directory, they can be run by Atom.
 
-Under the hood, [Jasmine](https://github.com/pivotal/jasmine) is being used to
-execute the tests, so you can assume that any DSL available there is available
-to your package as well.
+Under the hood, [Jasmine] executes your tests, so you can assume that any DSL
+available there is available to your package as well.
 
-# Full Example
+**FIXME: Explain the following**
 
-Let's take a look at creating our first package.
+* jasmine
+* jasmine-focused
+* `spec/fixtures` and global.project
+* setTimeout
+* whatever else is different in spec-helper
 
-Atom has a command you can enter that'll create a package for you:
-`package-generator:generate`. Otherwise, you can hit `cmd-p`, and start typing
-"Package Generator." Once you activate this package, it'll ask you for a name for
-your new package. Let's call ours _changer_.
+## Running Tests
 
-Now, _changer_ is going to have a default set of folders and files created for us.
-Hit `cmd-r` to reload Atom, then hit `cmd-p` and start typing "Changer." You'll
-see a new `Changer:Toggle` command which, if selected, pops up a new message. So
-far, so good!
+TODO: Probably use the menu option now.
 
-In order to demonstrate the capabilities of Atom and its API, our Changer plugin
-is going to do two things:
+Once you've got your test suite written, the recommended way to run it is `apm
+test`. `apm test` prints its output to the console and returns the proper status
+code depending on whether tests passed or failed.
 
-1. It'll show only modified files in the file tree
-2. It'll append a new pane to the editor with some information about the modified
-files
+## Publishing
 
-Let's get started!
+Atom bundles a command line utility called [apm] which can be used to publish
+Atom packages to the public registry.
 
-## Changing Keybindings and Commands
+Once your package is written and ready for distribution you can run the
+following to publish your package:
 
-Since Changer is primarily concerned with the file tree, let's write a keybinding
-that works only when the tree is focused. Instead of using the default `toggle`,
-our keybinding executes a new command called `magic`.
-
-_keymaps/changer.cson_ can easily become this:
-
-```coffeescript
-'.tree-view-scroller':
-  'ctrl-V': 'changer:magic'
+```sh
+cd my-package
+apm publish minor
 ```
 
-Notice that the keybinding is called `ctrl-V`--that's actually `ctrl-shift-v`.
-You can use capital letters to denote using `shift` for your binding.
+This will update your `package.json` to have a new minor `version`, commit the
+change, create a new [Git tag][git-tag], and then upload the package to the
+registry.
 
-`.tree-view-scroller` represents the parent container for the tree view. Keybindings
-only work within the context of where they're entered. For example, hitting `ctrl-V`
-anywhere other than tree won't do anything. You can map to `body` if you want
-to scope to anywhere in Atom, or just `.editor` for the editor portion.
+Run `apm help publish` to see all the available options and `apm help` to see
+all the other available commands.
 
-To bind keybindings to a command, we'll use the `rootView.command` method. This
-takes a command name and executes a function in the code. For example:
+## Included Libraries
 
-```coffeescript
-rootView.command "changer:magic", => @magic()
-```
+FIXME: Describe `require 'atom'
 
-It's common practice to namespace your commands with your package name, and separate
-it with a colon (`:`). Rename the existing `toggle` method to `magic` to get the
-binding to work.
+In addition to core node.js modules, all packages can `require` the following
+popular libraries into their packages:
 
-Reload the editor, click on the tree, hit your keybinding, and...nothing happens! What the heck?!
-
-Open up the _package.json_ file, and notice the key that says `activationEvents`.
-Basically, this tells Atom to not load a package until it hears a certain event.
-Let's change the event to `changer:magic` and reload the editor.
-
-Hitting the key binding on the tree now works!
-
-## Working with styles
-
-The next step is to hide elements in the tree that aren't modified. To do that,
-we'll first try and get a list of files that have not changed.
-
-All packages are able to use jQuery in their code. In fact, we have [a list of
-some of the bundled libraries Atom provides by default](#included-libraries).
-
-Let's bring in jQuery:
-
-```coffeescript
-$ = require 'jquery'
-```
-
-Now, we can query the tree to get us a list of every file that _wasn't_ modified:
-
-```coffeescript
-magic: ->
-  $('ol.entries li').each (i, el) ->
-    if !$(el).hasClass("modified")
-      console.log el
-```
-
-You can access the dev console by hitting `alt-cmd-i`. When we execute the
-`changer:magic` command, the browser console lists the items that are not being
-modified. Let's add a class to each of these elements called `hide-me`:
-
-```coffeescript
-magic: ->
-  $('ol.entries li').each (i, el) ->
-    if !$(el).hasClass("modified")
-      $(el).addClass("hide-me")
-```
-
-With our newly added class, we can manipulate the visibility of the elements
-with a simple stylesheet. Open up _changer.css_ in the _stylesheets_ directory,
-and add a single entry:
-
-```css
-ol.entries .hide-me {
-  display: none;
-}
-```
-
-Refresh atom, and run the `changer` command. You'll see all the non-changed files
-disappear from the tree. There are a number of ways you can get the list back;
-let's just naively iterate over the same elements and remove the class:
-
-```coffeescript
-magic: ->
-  $('ol.entries li').each (i, el) ->
-    if !$(el).hasClass("modified")
-      if !$(el).hasClass("hide-me")
-        $(el).addClass("hide-me")
-      else
-        $(el).removeClass("hide-me")
-```
-
-## Creating a New Pane
-
-The next goal of this package is to append a pane to the Atom editor that lists
-some information about the modified files.
-
-To do that, we're going to first create a new class method called `content`. Every
-package that extends from the `View` class can provide an optional class method
-called `content`. The `content` method constructs the DOM that your package uses
-as its UI. The principals of `content` are built entirely on [SpacePen](https://github.com/nathansobo/space-pen),
-which we'll touch upon only briefly here.
-
-Our display will simply be an unordered list of the file names, and their
-modified times. Let's start by carving out a `div` to hold the filenames:
-
-```coffeescript
-@content: ->
-  @div class: 'modified-files-container', =>
-    @ul class: 'modified-files-list', outlet: 'modifiedFilesList', =>
-      @li 'Test'
-      @li 'Test2'
-```
-
-You can add any HTML5 attribute you like. `outlet` names the variable
-your package can uses to manipulate the element directly. The fat pipe (`=>`) indicates
-that the next set are nested children.
-
-We'll add one more line to `magic` to make this pane appear:
-
-```coffeescript
-rootView.vertical.append(this)
-```
-
-If you hit the key command, you'll see a box appear right underneath the editor.
-Success!
-
-Before we populate this, let's apply some logic to toggle the pane off and on, just
-like we did with the tree view:
-
-```coffeescript
-# toggles the pane
-if @hasParent()
-  rootView.vertical.children().last().remove()
-else
-  rootView.vertical.append(this)
-```
-
-There are about a hundred different ways to toggle a pane on and off, and this
-might not be the most efficient one. If you know your package needs to be toggled
-on and off more freely, it might be better to draw the UI during the initialization,
-then immediately call `hide()` on the element to remove it from the view. You can
-then swap between `show()` and `hide()`, and instead of forcing Atom to add and remove
-the element as we're doing here, it'll just set a CSS property to control your package's
-visibility.
-
-You might have noticed that our two `li` elements aren't showing up. Let's set
-a color on them so that they pop. Open up `changer.css` and add this CSS:
-
-```css
-ul.modified-files-list {
-  color: white;
-}
-```
-
-Refresh Atom, hit the key combo, and see your brilliantly white test list.
-
-## Calling Node.js Code
-
-Since Atom is built on top of Node.js, you can call any of its libraries, including
-other modules that your package requires.
-
-We'll iterate through our resulting tree, and construct the path to our modified
-file based on its depth in the tree:
-
-```coffeescript
-path = require 'path'
-
-# ...
-
-modifiedFiles = []
-# for each single entry...
-$('ol.entries li.file.modified span.name').each (i, el) ->
-  filePath = []
-  # ...grab its name...
-  filePath.unshift($(el).text())
-
-  # ... then find its parent directories, and grab their names
-  parents = $(el).parents('.directory.modified')
-  parents.each (i, el) ->
-    filePath.unshift($(el).find('div.header span.name').eq(0).text())
-
-  modifiedFilePath = path.join(project.rootDirectory.path, filePath.join(path.sep))
-  modifiedFiles.push modifiedFilePath
-```
-
-`modifiedFiles` is an array containing a list of our modified files. We're also using
-the node.js [`path` library](http://nodejs.org/docs/latest/api/path.html) to get
-the proper directory separator for our system.
-
-Let's remove the two `@li` elements we added in `@content`, so that we can populate
-our `modifiedFilesList` with real information. We'll do that by iterating over
-`modifiedFiles`, accessing a file's last modified time, and appending it to
-`modifiedFilesList`:
-
-```coffeescript
-# toggles the pane
-if @hasParent()
-  rootView.vertical.children().last().remove()
-else
-  for file in modifiedFiles
-    stat = fs.lstatSync(file)
-    mtime = stat.mtime
-    @modifiedFilesList.append("<li>#{file} - Modified at #{mtime}")
-  rootView.vertical.append(this)
-```
-
-When you toggle the modified files list, your pane is now populated with the filenames
-and modified times of files in your project. You might notice that subsequent calls
-to this command reduplicate information. We could provide an elegant way of rechecking
-files already in the list, but for this demonstration, we'll just clear the `modifiedFilesList`
-each time it's closed:
-
-```coffeescript
-# toggles the pane
-if @hasParent()
-  @modifiedFilesList.empty()
-  rootView.vertical.children().last().remove()
-else
-  for file in modifiedFiles
-    stat = fs.lstatSync(file)
-    mtime = stat.mtime
-    @modifiedFilesList.append("<li>#{file} - Modified at #{mtime}")
-  rootView.vertical.append(this)
-```
-
-# Included Libraries
-
-In addition to core node.js modules, all packages can `require` the following popular
-libraries into their packages:
-
-* [SpacePen](https://github.com/nathansobo/space-pen) (as `require 'space-pen'`)
-* [jQuery](http://jquery.com/) (as `require 'jquery'`)
-* [Underscore](http://underscorejs.org/) (as `require 'underscore'`)
-
-Additional libraries can be found by browsing Atom's _node_modules_ folder.
+* [SpacePen] (as `require 'space-pen'`)
+* [jQuery] (as `require 'jquery'`)
+* [Underscore] (as `require 'underscore'`)
 
+Additional libraries can be found by browsing Atom's *node_modules* folder.
 
+[file-tree]: https://github.com/atom/tree-view
+[status-bar]: https://github.com/atom/status-bar
+[cs-syntax]: https://github.com/atom/language-coffee-script
 [npm]: http://en.wikipedia.org/wiki/Npm_(software)
+[npm-keys]: https://npmjs.org/doc/json.html
+[apm]: https://github.com/atom/apm
+[git-tag]: http://git-scm.com/book/en/Git-Basics-Tagging
+[wrap-guide]: https://github.com/atom/wrap-guide/
+[keymaps]: internals/keymaps.md
+[theme-variables]: theme-variables.md
+[tm-tokens]: http://manual.macromates.com/en/language_grammars.html
+[spacepen]: https://github.com/nathansobo/space-pen
+[path]: http://nodejs.org/docs/latest/api/path.html
+[jquery]: http://jquery.com/
+[underscore]: http://underscorejs.org/
+[jasmine]: https://github.com/pivotal/jasmine
+[cson]: https://github.com/atom/season
+[less]: http://lesscss.org
+[ui-variables]: https://github.com/atom/atom-dark-ui/blob/master/stylesheets/ui-variables.less
+[first-package]: your-first-package.html

docs/creating-a-theme.md

@@ -1,76 +1,135 @@
-{{{
-"title": "Creating a Theme"
-}}}
-
 # Creating a Theme
 
-## Overview
+Atom's interface is rendered using HTML, and it's styled via [LESS] (a superset
+of CSS). Don't worry if you haven't heard of LESS before; it's just like CSS, but
+with a few handy extensions.
 
-* Explain the difference between ui themes and syntax themes
+Since CSS is the basis of the theming system, we can load multiple themes within
+Atom, and the themes behave just as they would on a website. Themes loaded first
+are overridden by themes which are loaded later. The order of theme loading is
+controlled within the Settings/Themes pane.
+
+This flexibility is helpful for users that prefer a light interface with a dark
+syntax theme. Atom currently has only interface and syntax themes, but it is
+possible to create a theme to style something specific — say, changing
+the colors in the tree view or creating a language specific syntax theme.
 
 ## Getting Started
 
-* What do I need to install?
-  * Atom - to edit text
-  * Git - to track and distribute your themes
-* What do I need to know?
-  * CSS/LESS - as that's what themes are written in
-  * Devtools - so you can find the selector you're looking for.
-* Is there an example I can start from?
-  * Yes, you can clone https://github.com/atom/solarized-dark-syntax
+Themes are pretty straight forward but it's still helpful to be familiar with
+a few things before starting:
 
-# Create a minimal syntax theme
+* LESS is a superset of CSS, but it has some really handy features like
+  variables. If you aren't familiar with its syntax take a few minutes
+  to [familiarize yourself][less-tutorial].
+* You may also want to review the concept of a _[package.json]_, too. This file
+is used to help distribute your theme to Atom users.
 
-```bash
-cd ~/.atom/packages
-mkdir my-theme
-cd my-theme
-git init
-mkdir stylesheets
-apm init --theme
-cat > index.less <<END
-@import "./stylesheets/base.less";
-@import "./stylesheets/overrides.less";
-END
-cat > stylesheets/base.less <<END
-@import "ui-variables";
+There are two types of themes you can create: syntax themes and interface themes.
+The differences between them are simply a matter of what they target and what
+they provide. Syntax themes focus on the entire editor pane, while interface themes
+target elements which are outside of the editor.
 
-.editor {
-  color: fade(@text-color, 20%);
-}
-END
-cat > stylesheets/overrides.less <<END
-@import "ui-variables";
+## Creating a Syntax Theme
 
-.editor {
-  color: fade(@text-color, 80%);
-}
-END
-```
+Let's create your first theme.
 
-### Important points
+To get started, hit `cmd-p`, and start typing "Generate Theme" to generate
+a package. Select "Generate Theme," and you'll be asked for a theme name. Let's
+call ours _motif_.
 
-* Notice the theme attribute in the package.json file (generated by apm). This
-  is specific to Atom and required for all theme packages. Otherwise they won't
-  be displayed in the theme chooser.
-* Notice the ui-variables require. If you'd like to make your theme adapt to the
-  users choosen ui theme, these variables allow you to create your own colors
-  based on them.
+Atom will pop open a new window, showing the _motif_ theme, with a default set of
+folders and files created for us. If you hit `cmd-,` and navigate to the Themes
+menu option, you'll see the `motif` theme already available. Drag it over from
+"Enabled Themes" to "Available Themes."
 
-## How to create a UI theme
+Open up _stylesheets/colors.less_ to change the various colors variables which
+have been already been defined. For example, turn `@red` into `#f4c2c1`.
 
-* Needs to have a file called ui-variables and it must contain the following
-  variables:
-    * A list of variables from @benogle's theme refactor.
+Then, open _stylesheets/base.less_, and modify the various syntax CSS selectors
+that have been already been defined. Each of these selectors represents a different
+part of the Atom window. Themes that don't need to modify a particular region
+can simply remove the selectors they don't need.
 
-## How to just override UI colors
+As an example, let's make the `.gutter` `background-color` into `@red`.
 
-* Not interested in making an entire theme? Not to worry, you can override just
-  the colors.
-* Create a theme as above but just include a single file in your `stylesheets`
-  directory called `ui-variables.less`
-* IMPORTANT: This theme must come before
+Reload Atom by hitting `cmd-r` to see the changes you made reflected in your Atom
+window. Pretty neat!
 
-## How to create a syntax theme
+## Creating an Interface Theme
 
-* Explain the idea behind grammars/tokens and classes you'd want to override.
+Interface themes  **must** provide a `ui-variables.less` file which contains all
+of the variables provided by the [core themes][ui-variables].
+
+To create an interface UI theme, do the following:
+
+1. Fork one of the following repos
+  1. [atom-dark-ui]
+  1. [atom-light-ui]
+1. Open a terminal in the forked theme's directory
+1. Open your new theme in a Dev Mode Atom window (run `atom -d .` in the terminal or use the __View > Developer > Open in Dev Mode__ menu)
+1. Change the name of the theme in the theme's `package.json` file
+1. Run `apm link` to tell Atom about your new theme
+1. Reload Atom (`cmd-r`)
+1. Enable the theme via the themes panel in settings
+1. Make changes! Since you opened the theme in a Dev Mode window, changes will
+   be instantly reflected in the editor without having to reload.
+
+## Development workflow
+
+There are a few of tools to help make theme development faster.
+
+### Live Reload
+
+Reloading by hitting `cmd-r` after you make changes to your theme is less than ideal.
+Atom supports [live updating][livereload] of styles on Dev Mode Atom windows.
+
+To enable a Dev Mode window:
+
+1. Open your theme directory in a dev window by either going to the
+__View > Developer > Open in Dev Mode__ menu or by hitting the `cmd-shift-o`
+shortcut
+1. Make a change to your theme file and save it. Your change should be
+immediately applied!
+
+If you'd like to reload all the styles at any time, you can use the shortcut
+`cmd-ctrl-R`.
+
+### Developer Tools
+
+Atom is based on the Chrome browser, and supports Chrome's Developer Tools. You
+can open them by selecting the __View > Toggle Developer Tools__ menu, or by using
+the `cmd-option-i` shortcut.
+
+The dev tools allow you to inspect elements and take a look at their CSS
+properties.
+
+![devtools-img]
+
+Check out Google's [extensive tutorial][devtools-tutorial] for a short introduction.
+
+### Atom Styleguide
+
+If you are creating an interface theme, you'll want a way to see how your theme
+changes affect all the components in the system. The [styleguide] is a page with
+every component Atom supports rendered.
+
+To open the styleguide, open the command palette (`cmd-p`) and search for
+_styleguide_, or use the shortcut `cmd-ctrl-shift-g`.
+
+![styleguide-img]
+
+[less]: http://lesscss.org/
+[git]: http://git-scm.com/
+[atom]: https://atom.io/
+[package.json]: ./creating-a-package.html#package-json
+[less-tutorial]: https://speakerdeck.com/danmatthews/less-css
+[devtools-tutorial]: https://developers.google.com/chrome-developer-tools/docs/elements
+[ui-variables]: ./theme-variables.html
+[livereload]: https://github.com/atom/dev-live-reload
+[styleguide]: https://github.com/atom/styleguide
+[atom-dark-ui]: https://github.com/atom/atom-dark-ui
+[atom-light-ui]: https://github.com/atom/atom-light-ui
+[styleguide-img]: https://f.cloud.github.com/assets/69169/1347390/2d431d98-36af-11e3-8f8e-3f4ce1e67adb.png
+[devtools-img]: https://f.cloud.github.com/assets/69169/1347391/2d51f91c-36af-11e3-806f-f7b334af43e9.png
+[themesettings-img]: https://f.cloud.github.com/assets/69169/1347569/3150bd0c-36b2-11e3-9d69-423503acfe3f.png

docs/customizing-atom.md

@@ -1,58 +1,23 @@
-{{{
-"title": "Customizing Atom"
-}}}
+# Customizing Atom
 
-# Configuration Settings
+To change a setting, configure a theme, or install a package just open the
+Settings pane in the current window by pressing `cmd+,`.
 
-## Your .atom Directory
+## Changing The Theme
 
-When you install Atom, an _.atom_ directory is created in your home directory.
-If you press `cmd-,`, that directory is opened in a new window. For the
-time being, this serves as the primary interface for adjusting configuration
-settings, adding and changing key bindings, tweaking styles, etc.
+Because Atom themes are based on CSS, it's possible (and encouraged) to have
+multiple themes active at the same time. Atom comes with both light and dark
+interface themes as well as several syntax themes (you can also [create your
+own][create-theme]).
 
-Atom loads configuration settings from the `config.cson` file in your _~/.atom_
-directory, which contains CoffeeScript-style JSON:
+To change the active themes just open the Settings pane (`cmd-,`) and select the
+`Themes` tab. You can install non-bundled themes by going to the `Available
+Themes` section on the `Packages` tab within the Settings panel.
 
-```coffeescript
-core:
-  hideGitIgnoredFiles: true
-editor:
-  fontSize: 18
-```
+## Installing Packages
 
-Configuration is broken into namespaces, which are defined by the config hash's
-top-level keys. In addition to Atom's core components, each package may define
-its own namespace.
-
-## Glossary of Config Keys
-
-- `core`
-  - `disablePackages`: An array of package names to disable
-  - `hideGitIgnoredFiles`: Whether files in the _.gitignore_ should be hidden
-  - `ignoredNames`: File names to ignore across all of Atom (not fully implemented)
-  - `themes`: An array of theme names to load, in cascading order
-  - `autosave`: Save a buffer when its view loses focus
-- `editor`
-  - `autoIndent`: Enable/disable basic auto-indent (defaults to `true`)
-  - `autoIndentOnPaste`: Enable/disable auto-indented pasted text (defaults to `false`)
-  - `nonWordCharacters`: A string of non-word characters to define word boundaries
-  - `fontSize`: The editor font size
-  - `fontFamily`: The editor font family
-  - `invisibles`: Specify characters that Atom renders for invisibles in this hash
-      - `tab`: Hard tab characters
-      - `cr`: Carriage return (for Microsoft-style line endings)
-      - `eol`: `\n` characters
-      - `space`: Leading and trailing space characters
-  - `preferredLineLength`: Identifies the length of a line (defaults to `80`)
-  - `showInvisibles`: Whether to render placeholders for invisible characters (defaults to `false`)
-- `fuzzyFinder`
-  - `ignoredNames`: Files to ignore *only* in the fuzzy-finder
-- `whitespace`
-  - `ensureSingleTrailingNewline`: Whether to reduce multiple newlines to one at the end of files
-- `wrapGuide`
-  - `columns`: Array of hashes with a `pattern` and `column` key to match the
-             the path of the current editor to a column position.
+You can install non-bundled packages by going to the `Available Packages`
+section on the `Packages` tab within the Settings panel (`cmd-,`).
 
 ## Customizing Key Bindings
 
@@ -65,8 +30,9 @@ built-in keymaps:
 '.editor':
   'enter': 'editor:newline'
 
-".select-list .editor.mini":
-  'enter': 'core:confirm',
+'body':
+  'ctrl-P': 'core:move-up'
+  'ctrl-p': 'core:move-down'
 ```
 
 This keymap defines the meaning of `enter` in two different contexts. In a
@@ -75,37 +41,75 @@ the editor to insert a newline. But if the same keystroke occurs inside of a
 select list's mini-editor, it instead emits the `core:confirm` event based on
 the binding in the more-specific selector.
 
-By default, any keymap files in your `~/.atom/keymaps` directory are loaded
-in alphabetical order when Atom is started. They will always be loaded last,
-giving you the chance to override bindings that are defined by Atom's core
-keymaps or third-party packages.
+By default, `~/.atom/keymap.cson` is loaded when Atom is started. It will always
+be loaded last, giving you the chance to override bindings that are defined by
+Atom's core keymaps or third-party packages.
 
-## Changing The Theme
+You'll want to know all the commands available to you. Open the Settings panel
+(`cmd-,`) and select the _Keybindings_ tab. It will show you all the keybindings
+currently in use.
 
-Atom comes bundled with two themes `atom-dark-*` and `atom-light-*`.
+## Advanced Configuration
 
-Because Atom themes are based on CSS, it's possible to have multiple themes
-active at the same time.
+Atom loads configuration settings from the `config.cson` file in your _~/.atom_
+directory, which contains CoffeeScript-style JSON:
 
-For example, you'll usually select a theme for the UI and another theme for
-syntax highlighting.  You can change themes from the preferences pane.
+```coffeescript
+core:
+  hideGitIgnoredFiles: true
+editor:
+  fontSize: 18
+```
 
-You install new themes by placing them in the _~/.atom/themes_ directory. A
-theme can be a single LESS file or a directory containing multiple LESS files.
+The configuration itself is grouped by the package name or one of the two core
+namespaces: `core` and `editor`.
 
-## Installing Packages
+### Configuration Key Reference
 
-FIXME: Rewrite for the new dialog.
+- `core`
+  - `disabledPackages`: An array of package names to disable
+  - `excludeVcsIgnoredPaths`: Don't search within files specified by _.gitignore_
+  - `hideGitIgnoredFiles`: Whether files in the _.gitignore_ should be hidden
+  - `ignoredNames`: File names to ignore across all of Atom
+  - `projectHome`: The directory where projects are assumed to be located
+  - `themes`: An array of theme names to load, in cascading order
+- `editor`
+  - `autoIndent`: Enable/disable basic auto-indent (defaults to `true`)
+  - `autoIndentOnPaste`: Enable/disable auto-indented pasted text (defaults to `false`)
+  - `nonWordCharacters`: A string of non-word characters to define word boundaries
+  - `fontSize`: The editor font size
+  - `fontFamily`: The editor font family
+  - `invisibles`: Specify characters that Atom renders for invisibles in this hash
+      - `tab`: Hard tab characters
+      - `cr`: Carriage return (for Microsoft-style line endings)
+      - `eol`: `\n` characters
+      - `space`: Leading and trailing space characters
+  - `normalizeIndentOnPaste`: Enable/disable conversion of pasted tabs to spaces
+  - `preferredLineLength`: Identifies the length of a line (defaults to `80`)
+  - `showInvisibles`: Whether to render placeholders for invisible characters (defaults to `false`)
+  - `showIndentGuide`: Show/hide indent indicators within the editor
+  - `showLineNumbers`: Show/hide line numbers within the gutter
+  - `softWrap`: Enable/disable soft wrapping of text within the editor
+  - `softWrapAtPreferredLineLength`: Enable/disable soft line wrapping at `preferredLineLength`
+  - `tabLength`: Number of spaces within a tab (defaults to `2`)
+- `fuzzyFinder`
+  - `ignoredNames`: Files to ignore *only* in the fuzzy-finder
+- `whitespace`
+  - `ensureSingleTrailingNewline`: Whether to reduce multiple newlines to one at the end of files
+  - `removeTrailingWhitespace`: Enable/disable striping of whitespace at the end of lines (defaults to `true`)
+- `wrapGuide`
+  - `columns`: Array of hashes with a `pattern` and `column` key to match the
+             the path of the current editor to a column position.
 
-## Quick Personal Hacks
+### Quick Personal Hacks
 
 ### user.coffee
 
 When Atom finishes loading, it will evaluate _user.coffee_ in your _~/.atom_
 directory, giving you a chance to run arbitrary personal CoffeeScript code to
 make customizations. You have full access to Atom's API from code in this file.
-Please refer to the [Atom Internals Guide](./internals/intro,md) for more information. If your
-customizations become extensive, consider [creating a package](./packages/creating_packages.md).
+If customizations become extensive, consider [creating a
+package][create-a-package].
 
 ### user.less
 
@@ -113,8 +117,8 @@ If you want to apply quick-and-dirty personal styling changes without creating
 an entire theme that you intend to distribute, you can add styles to
 _user.less_ in your _~/.atom_ directory.
 
-For example, to change the color of the highlighted line number for the line that
-contains the cursor, you could add the following style to _user.less_:
+For example, to change the color of the highlighted line number for the line
+that contains the cursor, you could add the following style to _user.less_:
 
 ```less
 @highlight-color: pink;
@@ -123,3 +127,6 @@ contains the cursor, you could add the following style to _user.less_:
   color: @highlight-color;
 }
 ```
+
+[create-a-package]: creating-packages.md
+[create-theme]: creating-a-theme.md

docs/getting-started.md

@@ -1,32 +1,28 @@
-{{{
-"title": "Getting Started"
-}}}
-
 # Getting Started
 
 Welcome to Atom! This guide provides a quick introduction so you can be
 productive as quickly as possible. There are also guides which cover
-[configuring][configuring], [theming][theming], and [extending][extending] Atom.
+[configuring], [theming], and [extending] Atom.
 
 ## The Command Palette
 
 If there's one key-command you must remember in Atom, it should be `cmd-p`. You
 can always hit `cmd-p` to bring up a list of commands that are relevant to the
-currently focused UI element. If there is a key binding for a given command, it
-is also displayed. This is a great way to explore the system and get to know the
-key commands interactively. If you'd like to learn about adding or changing a
-binding for a command, refer to the [key bindings](#customizing-key-bindings)
+currently focused interface element. If there is a key binding for a given
+command, it is also displayed. This is a great way to explore the system and get
+to know the key commands interactively. If you'd like to learn about adding or
+changing a binding for a command, refer to the [key bindings][key-bindings]
 section below.
 
-![Command Palette](https://f.cloud.github.com/assets/1424/1091618/ee7c3554-166a-11e3-9955-aaa61bb5509c.png)
+![Command Palette]
 
 ## The Basics
 
 ### Working With Files
 
-Atom windows are scoped to the directory in which they're opened from. So if
-you launch Atom from the command line, everything will be relative to the
-current directory. This means that the tree view on the left will only show files
+Atom windows are scoped to the directory in which they're opened from. So if you
+launch Atom from the command line, everything will be relative to the current
+directory. This means that the tree view on the left will only show files
 contained within that directory.
 
 This can be a useful way to organize multiple projects, as each project will be
@@ -57,21 +53,23 @@ To delete a file, select it in the tree view and hit `delete`.
 
 #### Find and Replace
 
-FIXME: Describe https://github.com/atom/find-and-replace
+To search within a buffer use `cmd-f`. To search the entire project use
+`cmd-shift-f`. To find and replace within the current buffer use `cmd-alt-f`.
 
 #### Navigating By Symbols
 
 If you want to jump to a method, the `cmd-j` binding opens a list of all symbols
-in the current file. `cmd-.` jumps to the tag for the word currently under the cursor.
+in the current file. `cmd-.` jumps to the tag for the word currently under the
+cursor.
 
 To search for symbols across your project use `cmd-shift-j`, but you'll need to
 make sure you have a tags file generated for the project Also, if you're editing
 CoffeeScript, it's a good idea to update your `~/.ctags` file to understand the
-language. Here is [a good example](https://github.com/kevinsawicki/dotfiles/blob/master/.ctags).
+language. Here is [a good example][ctags].
 
 ### Split Panes
 
-You can split any editor pane horizontally or vertically by using `ctrl-\` or
+You can split any editor pane horizontally or vertically by using `ctrl-w s` or
 `ctrl-w v`. Once you have a split pane, you can move focus between them with
 `ctrl-tab` or `ctrl-w w`. To close a pane, close all tabs inside it.
 
@@ -79,8 +77,7 @@ You can split any editor pane horizontally or vertically by using `ctrl-\` or
 
 You can fold everything with `ctrl-{` and unfold everything with
 `ctrl-}`. Or, you can fold / unfold by a single level with `ctrl-[` and
-`ctrl-]`. The user interaction around folds is still a bit rough, but we're
-planning to improve it soon.
+`ctrl-]`.
 
 ### Soft-Wrap
 
@@ -91,18 +88,15 @@ command.
 ## Configuration
 
 If you press `cmd-,`, a configuration panel will appear in the currently focused
-pane. This will serve as the primary interface for adjusting configuration
-settings, adding and changing key bindings, tweaking styles, etc.
+pane. This serves as the primary interface for adjusting settings, installing
+packages and changing themes.
 
 For more advanced configuration see the [customization guide][customization].
 
-## Installing Packages
-
-To install a package, open the configuration panel and select the packages tab.
-
-FIXME: Needs more details.
-
-[configuring]: customizing-atom.html
-[theming]: creating-a-theme.html
-[extending]: creating-a-package.html
-[customization]: customizing-atom.html
+[configuring]: customizing-atom.md
+[theming]: creating-a-theme.md
+[extending]: creating-a-package.md
+[customization]: customizing-atom.md
+[key-bindings]: #customizing-key-bindings
+[command palette]: https://f.cloud.github.com/assets/1424/1091618/ee7c3554-166a-11e3-9955-aaa61bb5509c.png
+[ctags]: https://github.com/kevinsawicki/dotfiles/blob/master/.ctags

docs/index.md

@@ -1,16 +1,13 @@
-{{{
-"title": "Guides"
-}}}
-
 ## Guides
 
-* [Getting Started](getting-started.html)
-* [Customizing Atom](customizing-atom.html)
-* [Creating a Package](creating-a-package.html)
-* [Creating a Theme](creating-a-theme.html)
+* [Getting Started](getting-started.md)
+* [Customizing Atom](customizing-atom.md)
+* [Creating a Package](creating-a-package.md)
+* [Creating a Theme](creating-a-theme.md)
 
 ### Advanced Topics
-* [Configuration](internals/configuration.html)
-* [Keymaps](internals/keymaps.html)
-* [Serialization](internals/serialization.html)
-* [View System](internals/view-system.html)
+
+* [Configuration](internals/configuration.md)
+* [Keymaps](internals/keymaps.md)
+* [Serialization](internals/serialization.md)
+* [View System](internals/view-system.md)

docs/internals/configuration.md

@@ -7,7 +7,7 @@ read config settings. You can read a value from `config` with `config.get`:
 
 ```coffeescript
 # read a value with `config.get`
-@autosave() if config.get "core.autosave"
+@showInvisibles() if config.get "edtior.showInvisibles"
 ```
 
 Or you can use `observeConfig` to track changes from a view object.
@@ -47,7 +47,7 @@ the following way:
 
 ```coffeescript
 # basic key update
-config.set("core.autosave", true)
+config.set("core.showInvisibles", true)
 
 config.pushAtKeyPath("core.disabledPackages", "wrap-guide")
 ```

docs/internals/view-system.md

@@ -2,9 +2,8 @@
 
 ### SpacePen Basics
 
-Atom's view system is built around the [SpacePen](http://github.com/nathansobo/space-pen)
-view framework. SpacePen view objects inherit from the jQuery prototype, and
-wrap DOM nodes
+Atom's view system is built around the [SpacePen] view framework. SpacePen
+view objects inherit from the jQuery prototype, and wrap DOM nodes
 
 View objects are actually jQuery wrappers around DOM fragments, supporting all
 the typical jQuery traversal and manipulation methods. In addition, view objects
@@ -28,8 +27,7 @@ editorView = editorElement.view()
 editorView.setCursorBufferPosition([1, 2])
 ```
 
-Refer to the [SpacePen](http://github.com/nathansobo/space-pen) documentation
-for more details.
+Refer to the [SpacePen] documentation for more details.
 
 ### RootView
 
@@ -38,7 +36,7 @@ singleton instance of the `RootView` view class. The root view fills the entire
 window, and contains every other view. If you open Atom's inspector with
 `alt-cmd-i`, you can see the internal structure of `RootView`:
 
-![RootView in the inspector](https://f.cloud.github.com/assets/1424/1091631/1932c2d6-166b-11e3-8adf-9690fe82d3b8.png)
+![RootView in the inspector][rootview-inspector]
 
 #### Panes
 
@@ -62,3 +60,6 @@ rootView.horizontal.prepend(new MyView)
 # place a view below the panes (or use .prepend() to place it above)
 rootView.vertical.append(new MyOtherView)
 ```
+
+[spacepen]: http://github.com/nathansobo/space-pen
+[rootview-inspector]: https://f.cloud.github.com/assets/1424/1091631/1932c2d6-166b-11e3-8adf-9690fe82d3b8.png

docs/proposals/atom-docs.md

@@ -0,0 +1,63 @@
+## Atom Documentation Format
+
+This document describes our documentation format, which is markdown with
+a few rules.
+
+### Philosophy
+
+1. Method and argument names **should** clearly communicate its use.
+1. Use documentation to enhance and not correct method/argument names.
+
+#### Basic
+
+In some cases all that's required is a single line. **Do not** feel
+obligated to write more because we have a format.
+
+```markdown
+# Private: Returns the number of pixels from the top of the screen.
+```
+
+* **Each method should declare whether it's public or private by using `Public:`
+or `Private:`** prefix.
+* Following the colon, there should be a short description (that isn't redundant with the
+method name).
+* Documentation should be hard wrapped to 80 columns.
+
+### Public vs Private
+
+If a method is public it can be used by other classes (and possibly by
+the public API). The appropriate steps should be taken to minimize the impact
+when changing public methods. In some cases that might mean adding an
+appropriate release note. In other cases it might mean doing the legwork to
+ensure all affected packages are updated.
+
+#### Complex
+
+For complex methods it's necessary to explain exactly what arguments
+are required and how different inputs effect the operation of the
+function.
+
+The idea is to communicate things that the API user might not know about,
+so repeating information that can be gleaned from the method or argument names
+is not useful.
+
+```markdown
+# Private: Determine the accelerator for a given command.
+#
+# * command:
+#   The name of the command.
+# * keystrokesByCommand:
+#   An {Object} whose keys are commands and the values are Arrays containing
+#   the keystrokes.
+# * options:
+#     + accelerators:
+#       Boolean to determine whether accelerators should be shown.
+#
+# Returns a String containing the keystroke in a format that can be interpreted
+# by atom shell to provide nice icons where available.
+#
+# Raises an Exception if no window is available.
+```
+
+* Use curly brackets `{}` to provide links to other classes.
+* Use `+` for the options list.

docs/template.jst

@@ -137,8 +137,7 @@
         </div>
         <div class="collapse navbar-collapse">
           <ul class="nav navbar-nav">
-            <li><a href="/<%= tag %>/index.html">Guides</a></li>
-            <li><a href="/<%= tag %>/api/index.html">API</a></li>
+            <li><a href="/docs/api/<%= tag %>/api/index.html">API</a></li>
           </ul>
         </div><!--/.nav-collapse -->
       </div>

docs/theme-variables.md

@@ -0,0 +1,116 @@
+# Style variables
+
+Atom's UI provides a set of variables you can use in your own themes and packages.
+
+## Use in Themes
+
+Each custom theme must specify a `ui-variables.less` file with all of the
+following variables defined. The top-most theme specified in the theme settings
+will be loaded and available for import.
+
+## Use in Packages
+
+In any of your package's `.less` files, you can access the theme variables
+by importing the `ui-variables` file from Atom.
+
+Your package should generally only specify structural styling, and these should
+come from [the style guide][styleguide]. Your package shouldn't specify colors,
+padding sizes, or anything in absolute pixels. You should instead use the theme
+variables. If you follow this guideline, your package will look good out of the
+box with any theme!
+
+Here's an example `.less` file that a package can define using theme variables:
+
+```css
+@import "ui-variables";
+
+.my-selector{
+  background-color: @base-background-color;
+  padding: @component-padding;
+}
+```
+
+## Variables
+
+### Text colors
+
+* `@text-color`
+* `@text-color-subtle`
+* `@text-color-highlight`
+* `@text-color-selected`
+* `@text-color-info` - A blue
+* `@text-color-success`- A green
+* `@text-color-warning`- An orange or yellow
+* `@text-color-error` - A red
+
+### Background colors
+
+* `@background-color-info` - A blue
+* `@background-color-success` - A green
+* `@background-color-warning` - An orange or yellow
+* `@background-color-error` - A red
+* `@background-color-highlight`
+* `@background-color-selected`
+* `@app-background-color` - The app's background under all the editor components
+
+### Component colors
+
+* `@base-background-color` -
+* `@base-border-color` -
+
+* `@pane-item-background-color` -
+* `@pane-item-border-color` -
+
+* `@input-background-color` -
+* `@input-border-color` -
+
+* `@tool-panel-background-color` -
+* `@tool-panel-border-color` -
+
+* `@inset-panel-background-color` -
+* `@inset-panel-border-color` -
+
+* `@panel-heading-background-color` -
+* `@panel-heading-border-color` -
+
+* `@overlay-background-color` -
+* `@overlay-border-color` -
+
+* `@button-background-color` -
+* `@button-background-color-hover` -
+* `@button-background-color-selected` -
+* `@button-border-color` -
+
+* `@tab-bar-background-color` -
+* `@tab-bar-border-color` -
+* `@tab-background-color` -
+* `@tab-background-color-active` -
+* `@tab-border-color` -
+
+* `@tree-view-background-color` -
+* `@tree-view-border-color` -
+
+* `@ui-site-color-1` -
+* `@ui-site-color-2` -
+* `@ui-site-color-3` -
+* `@ui-site-color-4` -
+* `@ui-site-color-5` -
+
+### Component sizes
+
+* `@disclosure-arrow-size` -
+
+* `@component-padding` -
+* `@component-icon-padding` -
+* `@component-icon-size` -
+* `@component-line-height` -
+* `@component-border-radius` -
+
+* `@tab-height` -
+
+### Fonts
+
+* `@font-size` -
+* `@font-family` -
+
+[styleguide]: https://github.com/atom/styleguide

docs/your-first-package.md

@@ -0,0 +1,334 @@
+# Creating Your First Package
+
+Let's take a look at creating your first package.
+
+To get started, hit `cmd-p`, and start typing "Generate Package" to generate
+a package. Once you select the "Generate Package" command, it'll ask you for a
+name for your new package. Let's call ours _changer_.
+
+Atom will pop open a new window, showing the _changer_ package with a default set of
+folders and files created for us. Hit `cmd-p` and start typing "Changer." You'll
+see a new `Changer:Toggle` command which, if selected, pops up a greeting. So far,
+so good!
+
+In order to demonstrate the capabilities of Atom and its API, our Changer plugin
+is going to do two things:
+
+1. It'll show only modified files in the file tree
+2. It'll append a new pane to the editor with some information about the modified
+files
+
+Let's get started!
+
+## Changing Keybindings and Commands
+
+Since Changer is primarily concerned with the file tree, let's write a
+key binding that works only when the tree is focused. Instead of using the
+default `toggle`, our keybinding executes a new command called `magic`.
+
+_keymaps/changer.cson_ should change to look like this:
+
+```coffeescript
+'.tree-view':
+  'ctrl-V': 'changer:magic'
+```
+
+Notice that the keybinding is called `ctrl-V` — that's actually `ctrl-shift-v`.
+You can use capital letters to denote using `shift` for your binding.
+
+`.tree-view` represents the parent container for the tree view.
+Keybindings only work within the context of where they're entered. In this case,
+hitting `ctrl-V` anywhere other than tree won't do anything. Obviously, you can
+bind to any part of the editor using element, id, or class names. For example,
+you can map to `body` if you want to scope to anywhere in Atom, or just `.editor`
+for the editor portion.
+
+To bind keybindings to a command, we'll need to do a bit of association in our
+CoffeeScript code using the `rootView.command` method. This method takes a command
+name and executes a callback function. Open up _lib/changer-view.coffee_, and
+change `rootView.command "changer:toggle"` to look like this:
+
+```coffeescript
+rootView.command "changer:magic", => @magic()
+```
+
+It's common practice to namespace your commands with your package name, separated
+with a colon (`:`). Make sure to rename your `toggle` method to `magic` as well.
+
+Every time you reload the Atom editor, changes to your package code will be reevaluated,
+just as if you were writing a script for the browser. Reload the editor, click on
+the tree, hit your keybinding, and...nothing happens! What the heck?!
+
+Open up the _package.json_ file, and find the property called `activationEvents`.
+Basically, this key tells Atom to not load a package until it hears a certain event.
+Change the event to `changer:magic` and reload the editor:
+
+```json
+"activationEvents": ["changer:magic"]
+```
+
+Hitting the key binding on the tree now works!
+
+## Working with Styles
+
+The next step is to hide elements in the tree that aren't modified. To do that,
+we'll first try and get a list of files that have not changed.
+
+All packages are able to use jQuery in their code. In fact, there's [a list of
+the bundled libraries Atom provides by default][bundled-libs].
+
+We bring in jQuery by requiring the `atom` package and binding it to the `$` variable:
+
+```coffeescript
+{$, View} = require 'atom'
+```
+
+Now, we can define the `magic` method to query the tree to get us a list of every
+file that _wasn't_ modified:
+
+```coffeescript
+magic: ->
+  $('ol.entries li').each (i, el) ->
+    if !$(el).hasClass("status-modified")
+      console.log el
+```
+
+You can access the dev console by hitting `alt-cmd-i`. Here, you'll see all the
+statements from `console` calls. When we execute the `changer:magic` command, the
+browser console lists items that are not being modified (_i.e._, those without the
+`status-modified` class). Let's add a class to each of these elements called `hide-me`:
+
+```coffeescript
+magic: ->
+  $('ol.entries li').each (i, el) ->
+    if !$(el).hasClass("status-modified")
+      $(el).addClass("hide-me")
+```
+
+With our newly added class, we can manipulate the visibility of the elements
+with a simple stylesheet. Open up _changer.css_ in the _stylesheets_ directory,
+and add a single entry:
+
+```css
+ol.entries .hide-me {
+  display: none;
+}
+```
+
+Refresh Atom, and run the `changer` command. You'll see all the non-changed
+files disappear from the tree. Success!
+
+![Changer_File_View]
+
+There are a number of ways you can get the list back; let's just naively iterate
+over the same elements and remove the class:
+
+```coffeescript
+magic: ->
+  $('ol.entries li').each (i, el) ->
+    if !$(el).hasClass("status-modified")
+      if !$(el).hasClass("hide-me")
+        $(el).addClass("hide-me")
+      else
+        $(el).removeClass("hide-me")
+```
+
+## Creating a New Panel
+
+The next goal of this package is to append a panel to the Atom editor that lists
+some information about the modified files.
+
+To do that, we're going to first open up [the style guide][styleguide]. The Style
+Guide lists every type of UI element that can be created by an Atom package. Aside
+from helping you avoid writing fresh code from scratch, it ensures that packages
+have the same look and feel no matter how they're built.
+
+Every package that extends from the `View` class can provide an optional class
+method called `content`. The `content` method constructs the DOM that your
+package uses as its UI. The principals of `content` are built entirely on
+[SpacePen][space-pen], which we'll touch upon only briefly here.
+
+Our display will simply be an unordered list of the file names, and their
+modified times. We'll append this list to a panel on the bottom of the editor. A
+basic `panel` element inside a `tool-panel` will work well for us. Let's start by carving out a
+`div` to hold the filenames:
+
+```coffeescript
+@content: ->
+  @div class: "changer tool-panel panel-bottom", =>
+    @div class: "panel", =>
+      @div class: "panel-heading", "Modified Files"
+      @div class: "panel-body padded", outlet: 'modifiedFilesContainer', =>
+        @ul class: 'modified-files-list', outlet: 'modifiedFilesList', =>
+          @li 'Modified File Test'
+          @li 'Modified File Test'
+```
+
+You can add any HTML attribute you like. `outlet` names the variable your
+package can use to manipulate the element directly. The fat arrow (`=>`)
+indicates that the next DOM set are nested children.
+
+Once again, you can style `li` elements using your stylesheets. Let's test that
+out by adding these lines to the _changer.css_ file:
+
+```css
+ul.modified-files-list {
+  color: white;
+}
+```
+
+We'll add one more line to the end of the `magic` method to make this pane appear:
+
+```coffeescript
+rootView.vertical.append(this)
+```
+
+If you refresh Atom and hit the key command, you'll see a box appear right underneath
+the editor:
+
+![Changer_Panel_Append]
+
+As you might have guessed, `rootView.vertical.append` tells Atom to append `this`
+item (_i.e._, whatever is defined by`@content`) _vertically_ to the editor. If
+we had called `rootView.horizontal.append`, the pane would be attached to the
+right-hand side of the editor.
+
+Before we populate this panel for real, let's apply some logic to toggle the pane
+off and on, just like we did with the tree view. Replace the `rootView.vertical.append`
+call with this code:
+
+```coffeescript
+# toggles the pane
+if @hasParent()
+  rootView.vertical.children().last().remove()
+else
+  rootView.vertical.append(this)
+```
+
+There are about a hundred different ways to toggle a pane on and off, and this
+might not be the most efficient one. If you know your package needs to be
+toggled on and off more freely, it might be better to draw the interface during the
+initialization, then immediately call `hide()` on the element to remove it from
+the view. You can then swap between `show()` and `hide()`, and instead of
+forcing Atom to add and remove the element as we're doing here, it'll just set a
+CSS property to control your package's visibility.
+
+Refresh Atom, hit the key combo, and watch your test list appear and disappear.
+
+## Calling Node.js Code
+
+Since Atom is built on top of [Node.js][node], you can call any of its libraries,
+including other modules that your package requires.
+
+We'll iterate through our resulting tree, and construct the path to our modified
+file based on its depth in the tree. We'll use Node to handle path joining for
+directories.
+
+Add the following Node module to the top of your file:
+
+```coffeescript
+path = require 'path'
+```
+
+Then, add these lines to your `magic` method, _before_ your pane drawing code:
+
+```coffeescript
+modifiedFiles = []
+# for each single entry...
+$('ol.entries li.file.status-modified span.name').each (i, el) ->
+  filePath = []
+  # ...grab its name...
+  filePath.unshift($(el).text())
+
+  # ... then find its parent directories, and grab their names
+  parents = $(el).parents('.directory.status-modified')
+  parents.each (i, el) ->
+    filePath.unshift($(el).find('div.header span.name').eq(0).text())
+
+  modifiedFilePath = path.join(atom.project.rootDirectory.path, filePath.join(path.sep))
+  modifiedFiles.push modifiedFilePath
+```
+
+`modifiedFiles` is an array containing a list of our modified files. We're also
+using the node.js [`path` library][path] to get the proper directory separator
+for our system.
+
+Remove the two `@li` elements we added in `@content`, so that we can
+populate our `modifiedFilesList` with real information. We'll do that by
+iterating over `modifiedFiles`, accessing a file's last modified time, and
+appending it to `modifiedFilesList`:
+
+```coffeescript
+# toggles the pane
+if @hasParent()
+  rootView.vertical.children().last().remove()
+else
+  for file in modifiedFiles
+    stat = fs.lstatSync(file)
+    mtime = stat.mtime
+    @modifiedFilesList.append("<li>#{file} - Modified at #{mtime}")
+  rootView.vertical.append(this)
+```
+
+When you toggle the modified files list, your pane is now populated with the
+filenames and modified times of files in your project:
+
+![Changer_Panel_Timestamps]
+
+You might notice that subsequent calls to this command reduplicate information.
+We could provide an elegant way of rechecking files already in the list, but for
+this demonstration, we'll just clear the `modifiedFilesList` each time it's closed:
+
+```coffeescript
+# toggles the pane
+if @hasParent()
+  @modifiedFilesList.empty() # added this to clear the list on close
+  rootView.vertical.children().last().remove()
+else
+  for file in modifiedFiles
+    stat = fs.lstatSync(file)
+    mtime = stat.mtime
+    @modifiedFilesList.append("<li>#{file} - Modified at #{mtime}")
+  rootView.vertical.append(this)
+```
+
+## Coloring UI Elements
+
+For packages that create new UI elements, adhering to the style guide is just one
+part to keeping visual consistency. Packages dealing with color, fonts, padding,
+margins, and other visual cues should rely on [Theme Variables][theme-vars], instead
+of developing individual styles. Theme variables are variables defined by Atom
+for use in packages and themes. They're only available in [`LESS`](http://lesscss.org/)
+stylesheets.
+
+For our package, let's remove the style defined by `ul.modified-files-list` in
+_changer.css_. Create a new file under the _stylesheets_ directory called _text-colors.less_.
+Here, we'll import the _ui-variables.less_ file, and define some Atom-specific
+styles:
+
+```less
+@import "ui-variables";
+
+ul.modified-files-list {
+  color: @text-color;
+  background-color: @background-color-info;
+}
+```
+
+Using theme variables ensures that packages look great alongside any theme.
+
+## Further reading
+
+For more information on the mechanics of packages, check out
+[Creating a Package][creating-a-package].
+
+[bundled-libs]: creating-a-package.html#included-libraries
+[styleguide]: https://github.com/atom/styleguide
+[space-pen]: https://github.com/atom/space-pen
+[node]: http://nodejs.org/
+[path]: http://nodejs.org/docs/latest/api/path.html
+[changer_file_view]: https://f.cloud.github.com/assets/69169/1441187/d7a7cb46-41a7-11e3-8128-d93f70a5d5c1.png
+[changer_panel_append]: https://f.cloud.github.com/assets/69169/1441189/db0c74da-41a7-11e3-8286-b82dd9190c34.png
+[changer_panel_timestamps]: https://f.cloud.github.com/assets/69169/1441190/dcc8eeb6-41a7-11e3-830f-1f1b33072fcd.png
+[theme-vars]: theme-variables.html
+[creating-a-package]: creating-a-package.html

dot-atom/keymap.cson

@@ -0,0 +1,13 @@
+# User keymap
+#
+# Atom keymaps work similarly to stylesheets. Just as stylesheets use selectors
+# to apply styles to elements, Atom keymaps use selectors to associate
+# keystrokes with events in specific contexts. Here's a small example, excerpted
+# from Atom's built-in keymaps:
+#
+# '.editor':
+#   'enter': 'editor:newline'
+#
+# 'body':
+#   'ctrl-P': 'core:move-up'
+#   'ctrl-p': 'core:move-down'

dot-atom/themes/README.md

@@ -1 +0,0 @@
-All themes in this directory will be automatically loaded

exports/atom.coffee

@@ -0,0 +1,28 @@
+{Document, Point, Range} = require 'telepath'
+
+module.exports =
+  _: require 'underscore-plus'
+  BufferedNodeProcess: require '../src/buffered-node-process'
+  BufferedProcess: require '../src/buffered-process'
+  Directory: require '../src/directory'
+  Document: Document
+  File: require '../src/file'
+  fs: require 'fs-plus'
+  Git: require '../src/git'
+  Point: Point
+  Range: Range
+
+# The following classes can't be used from a Task handler and should therefore
+# only be exported when not running as a child node process
+unless process.env.ATOM_SHELL_INTERNAL_RUN_AS_NODE
+  {$, $$, $$$, View} = require '../src/space-pen-extensions'
+
+  module.exports.$ = $
+  module.exports.$$ = $$
+  module.exports.$$$ = $$$
+  module.exports.Editor = require '../src/editor-view'
+  module.exports.RootView = require '../src/root-view'
+  module.exports.SelectList = require '../src/select-list'
+  module.exports.ScrollView = require '../src/scroll-view'
+  module.exports.Task = require '../src/task'
+  module.exports.View = View

keymaps/apple.cson

@@ -1,21 +0,0 @@
-'body':
-  'meta-up': 'core:move-to-top'
-  'meta-down': 'core:move-to-bottom'
-  'meta-shift-up': 'core:select-to-top'
-  'meta-shift-down': 'core:select-to-bottom'
-
-'.editor':
-  'meta-right': 'editor:move-to-end-of-line'
-  'meta-left': 'editor:move-to-beginning-of-line'
-  'alt-left': 'editor:move-to-beginning-of-word'
-  'alt-right': 'editor:move-to-end-of-word'
-  'meta-shift-left': 'editor:select-to-beginning-of-line'
-  'meta-shift-right': 'editor:select-to-end-of-line'
-  'alt-shift-left': 'editor:select-to-beginning-of-word'
-  'alt-shift-right': 'editor:select-to-end-of-word'
-  'alt-backspace': 'editor:backspace-to-beginning-of-word'
-  'meta-backspace': 'editor:backspace-to-beginning-of-line'
-  'alt-delete': 'editor:delete-to-end-of-word'
-  'ctrl-t': 'editor:transpose'
-  'ctrl-A': 'editor:select-to-first-character-of-line'
-  'ctrl-E': 'editor:select-to-end-of-line'

keymaps/atom.cson

@@ -1,96 +0,0 @@
-'body':
-  'meta-q': 'application:quit'
-  'meta-h': 'application:hide'
-  'meta-H': 'application:hide-other-applications'
-  'meta-n': 'application:new-file'
-  'meta-N': 'application:new-window'
-  'meta-o': 'application:open'
-  'meta-O': 'application:open-dev'
-  'meta-m': 'application:minimize'
-  'meta-,': 'application:show-settings'
-  'alt-meta-ctrl-m': 'application:zoom'
-  'meta-alt-ctrl-s': 'application:run-all-specs'
-
-  'meta-s': 'core:save'
-  'meta-S': 'core:save-as'
-  'enter': 'core:confirm'
-  'escape': 'core:cancel'
-  'meta-w': 'core:close'
-  'up': 'core:move-up'
-  'down': 'core:move-down'
-  'left': 'core:move-left'
-  'right': 'core:move-right'
-  'shift-up': 'core:select-up'
-  'shift-down': 'core:select-down'
-  'shift-left': 'core:select-left'
-  'shift-right': 'core:select-right'
-  'meta-a': 'core:select-all'
-  'backspace': 'core:backspace'
-  'shift-backspace': 'core:backspace'
-  'delete': 'core:delete'
-  'meta-z': 'core:undo'
-  'meta-Z': 'core:redo'
-  'meta-x': 'core:cut'
-  'meta-c': 'core:copy'
-  'meta-v': 'core:paste'
-  'pageup': 'core:page-up'
-  'pagedown': 'core:page-down'
-
-  'meta-alt-s': 'window:save-all'
-  'meta-W': 'window:close'
-  'meta-+': 'window:increase-font-size'
-  'meta--': 'window:decrease-font-size'
-  'ctrl-w w': 'window:focus-next-pane'
-  'ctrl-tab': 'window:focus-next-pane'
-  'ctrl-meta-f': 'window:toggle-full-screen'
-  'meta-r': 'window:reload'
-  'alt-meta-i': 'window:toggle-dev-tools'
-  'meta-alt-ctrl-p': 'window:run-package-specs'
-
-  'ctrl-|': 'pane:split-right'
-  'ctrl-w v': 'pane:split-right'
-  'ctrl--': 'pane:split-down'
-  'ctrl-w s': 'pane:split-down'
-
-  'meta-{': 'pane:show-previous-item'
-  'meta-}': 'pane:show-next-item'
-  'alt-meta-left': 'pane:show-previous-item'
-  'alt-meta-right': 'pane:show-next-item'
-  'meta-1': 'pane:show-item-1'
-  'meta-2': 'pane:show-item-2'
-  'meta-3': 'pane:show-item-3'
-  'meta-4': 'pane:show-item-4'
-  'meta-5': 'pane:show-item-5'
-  'meta-6': 'pane:show-item-6'
-  'meta-7': 'pane:show-item-7'
-  'meta-8': 'pane:show-item-8'
-  'meta-9': 'pane:show-item-9'
-  'meta-T': 'pane:reopen-closed-item'
-  'alt-meta-w': 'pane:close-other-items'
-  'meta-P': 'pane:close'
-
-'.tool-panel':
-  'meta-escape': 'tool-panel:unfocus'
-  'escape': 'core:close'
-  'meta-w': 'noop'
-
-# allow standard input fields to work correctly
-'input:not(.hidden-input)':
-  'tab': 'core:focus-next'
-  'shift-tab': 'core:focus-previous'
-  'left': 'native!'
-  'right': 'native!'
-  'shift-left': 'native!'
-  'shift-right': 'native!'
-  'backspace': 'native!'
-  'shift-backspace': 'native!'
-  'delete': 'native!'
-  'meta-z': 'native!'
-  'meta-Z': 'native!'
-  'meta-x': 'native!'
-  'meta-c': 'native!'
-  'meta-v': 'native!'
-
-'button':
-  'tab': 'core:focus-next'
-  'shift-tab': 'core:focus-previous'

keymaps/base.cson

@@ -0,0 +1,52 @@
+'.editor':
+  # Platform Bindings
+  'alt-left': 'editor:move-to-previous-word-boundary'
+  'alt-right': 'editor:move-to-next-word-boundary'
+  'alt-shift-left': 'editor:select-to-previous-word-boundary'
+  'alt-shift-right': 'editor:select-to-next-word-boundary'
+  'home': 'editor:move-to-first-character-of-line'
+  'end': 'editor:move-to-end-of-line'
+  'shift-home': 'editor:select-to-first-character-of-line'
+  'shift-end': 'editor:select-to-end-of-line'
+
+  # Sublime Parity
+  'ctrl-t': 'editor:transpose'
+
+'.editor:not(.mini)':
+  # Atom Specific
+  'ctrl-C': 'editor:copy-path'
+
+  # Sublime Parity
+  'tab': 'editor:indent'
+  'enter': 'editor:newline'
+  'shift-tab': 'editor:outdent-selected-rows'
+  'ctrl-K': 'editor:delete-line'
+  'ctrl-shift-up': 'editor:add-selection-above'
+  'ctrl-shift-down': 'editor:add-selection-below'
+
+'.tool-panel':
+  'escape': 'core:close'
+
+'.tool-panel.panel-left, .tool-panel.panel-right':
+  'escape': 'tool-panel:unfocus'
+
+'.editor !important, .editor.mini !important':
+  'escape': 'editor:consolidate-selections'
+
+# allow standard input fields to work correctly
+'input:not(.hidden-input), .native-key-bindings':
+  'tab': 'core:focus-next'
+  'shift-tab': 'core:focus-previous'
+  'left': 'native!'
+  'right': 'native!'
+  'shift-left': 'native!'
+  'shift-right': 'native!'
+  'backspace': 'native!'
+  'shift-backspace': 'native!'
+  'delete': 'native!'
+  'ctrl-b': 'native!'
+  'ctrl-f': 'native!'
+  'ctrl-F': 'native!'
+  'ctrl-B': 'native!'
+  'ctrl-h': 'native!'
+  'ctrl-d': 'native!'

keymaps/darwin.cson

@@ -0,0 +1,154 @@
+'.platform-darwin':
+  # Apple specific
+  'cmd-q': 'application:quit'
+  'cmd-h': 'application:hide'
+  'cmd-H': 'application:hide-other-applications'
+  'cmd-m': 'application:minimize'
+  'alt-cmd-ctrl-m': 'application:zoom'
+
+  'ctrl-p': 'core:move-up'
+  'ctrl-n': 'core:move-down'
+  'ctrl-b': 'core:move-left'
+  'ctrl-f': 'core:move-right'
+  'ctrl-P': 'core:select-up'
+  'ctrl-N': 'core:select-down'
+  'ctrl-F': 'core:select-right'
+  'ctrl-B': 'core:select-left'
+  'ctrl-h': 'core:backspace'
+  'ctrl-d': 'core:delete'
+
+  # Atom Specific
+  'cmd-O': 'application:open-dev'
+  'cmd-alt-ctrl-s': 'application:run-all-specs'
+  'enter': 'core:confirm'
+  'escape': 'core:cancel'
+  'up': 'core:move-up'
+  'down': 'core:move-down'
+  'left': 'core:move-left'
+  'right': 'core:move-right'
+  'ctrl-alt-cmd-r': 'window:reload'
+  'alt-cmd-i': 'window:toggle-dev-tools'
+  'cmd-alt-ctrl-p': 'window:run-package-specs'
+
+  # Sublime Parity
+  'cmd-,': 'application:show-settings'
+  'cmd-N': 'application:new-window'
+  'cmd-W': 'window:close'
+  'cmd-o': 'application:open'
+  'cmd-T': 'pane:reopen-closed-item'
+  'cmd-n': 'application:new-file'
+  'cmd-s': 'core:save'
+  'cmd-S': 'core:save-as'
+  'cmd-alt-s': 'window:save-all'
+  'cmd-w': 'core:close'
+  'cmd-ctrl-f': 'window:toggle-full-screen'
+  'cmd-z': 'core:undo'
+  'cmd-Z': 'core:redo'
+  'cmd-y': 'core:redo'
+  'cmd-x': 'core:cut'
+  'cmd-c': 'core:copy'
+  'cmd-v': 'core:paste'
+  'shift-up': 'core:select-up'
+  'shift-down': 'core:select-down'
+  'shift-left': 'core:select-left'
+  'shift-right': 'core:select-right'
+  'delete': 'core:delete'
+  'pageup': 'core:page-up'
+  'pagedown': 'core:page-down'
+  'backspace': 'core:backspace'
+  'shift-backspace': 'core:backspace'
+  'cmd-up': 'core:move-to-top'
+  'cmd-down': 'core:move-to-bottom'
+  'cmd-shift-up': 'core:select-to-top'
+  'cmd-shift-down': 'core:select-to-bottom'
+  'cmd-{': 'pane:show-previous-item'
+  'cmd-}': 'pane:show-next-item'
+  'cmd-alt-left': 'pane:show-previous-item'
+  'cmd-alt-right': 'pane:show-next-item'
+  'cmd-=': 'window:increase-font-size'
+  'cmd-+': 'window:increase-font-size'
+  'cmd--': 'window:decrease-font-size'
+
+  'cmd-k up': 'pane:split-up' # Atom Specific
+  'cmd-k down': 'pane:split-down' # Atom Specific
+  'cmd-k left': 'pane:split-left' # Atom Specific
+  'cmd-k right': 'pane:split-right' # Atom Specific
+  'cmd-k cmd-w': 'pane:close' # Atom Specific
+  'cmd-k alt-cmd-w': 'pane:close-other-items' # Atom Specific
+  'cmd-k cmd-left': 'window:focus-previous-pane'
+  'cmd-k cmd-right': 'window:focus-next-pane'
+  'cmd-1': 'pane:show-item-1'
+  'cmd-2': 'pane:show-item-2'
+  'cmd-3': 'pane:show-item-3'
+  'cmd-4': 'pane:show-item-4'
+  'cmd-5': 'pane:show-item-5'
+  'cmd-6': 'pane:show-item-6'
+  'cmd-7': 'pane:show-item-7'
+  'cmd-8': 'pane:show-item-8'
+  'cmd-9': 'pane:show-item-9'
+
+'.platform-darwin .editor':
+  # Apple Specific
+  'cmd-backspace': 'editor:backspace-to-beginning-of-line'
+  'cmd-delete': 'editor:backspace-to-beginning-of-line'
+  'ctrl-A': 'editor:select-to-first-character-of-line'
+  'ctrl-E': 'editor:select-to-end-of-line'
+  'cmd-left': 'editor:move-to-first-character-of-line'
+  'cmd-right': 'editor:move-to-end-of-line'
+  'cmd-shift-left': 'editor:select-to-first-character-of-line'
+  'cmd-shift-right': 'editor:select-to-end-of-line'
+  'alt-backspace': 'editor:backspace-to-beginning-of-word'
+  'alt-delete': 'editor:delete-to-end-of-word'
+  'ctrl-a': 'editor:move-to-first-character-of-line'
+  'ctrl-e': 'editor:move-to-end-of-line'
+  'ctrl-k': 'editor:cut-to-end-of-line'
+
+  # Atom Specific
+  'ctrl-W': 'editor:select-word'
+
+  # Sublime Parity
+  'cmd-a': 'core:select-all'
+  'cmd-alt-p': 'editor:log-cursor-scope'
+  'cmd-k cmd-u': 'editor:upper-case'
+  'cmd-k cmd-l': 'editor:lower-case'
+
+'body.platform-darwin .editor:not(.mini)':
+  # Atom specific
+  'alt-cmd-z': 'editor:checkout-head-revision'
+  'cmd-<': 'editor:scroll-to-cursor'
+  'alt-cmd-ctrl-f': 'editor:fold-selection'
+  'cmd-=': 'editor:auto-indent'
+
+  # Sublime Parity
+  'cmd-enter': 'editor:newline-below'
+  'cmd-shift-enter': 'editor:newline-above'
+  'cmd-]': 'editor:indent-selected-rows'
+  'cmd-[': 'editor:outdent-selected-rows'
+  'ctrl-cmd-up': 'editor:move-line-up'
+  'ctrl-cmd-down': 'editor:move-line-down'
+  'cmd-/': 'editor:toggle-line-comments'
+  'cmd-j': 'editor:join-line'
+  'cmd-D': 'editor:duplicate-line'
+
+  'cmd-alt-[': 'editor:fold-current-row'
+  'cmd-alt-]': 'editor:unfold-current-row'
+  'cmd-alt-{': 'editor:fold-all' # Atom Specific
+  'cmd-alt-}': 'editor:unfold-all' # Atom Specific
+  'cmd-k cmd-0': 'editor:unfold-all'
+  'cmd-k cmd-1': 'editor:fold-at-indent-level-1'
+  'cmd-k cmd-2': 'editor:fold-at-indent-level-2'
+  'cmd-k cmd-3': 'editor:fold-at-indent-level-3'
+  'cmd-k cmd-4': 'editor:fold-at-indent-level-4'
+  'cmd-k cmd-5': 'editor:fold-at-indent-level-5'
+  'cmd-k cmd-6': 'editor:fold-at-indent-level-6'
+  'cmd-k cmd-7': 'editor:fold-at-indent-level-7'
+  'cmd-k cmd-8': 'editor:fold-at-indent-level-8'
+  'cmd-k cmd-9': 'editor:fold-at-indent-level-9'
+
+# allow standard input fields to work correctly
+'body.platform-darwin input:not(.hidden-input), body.platform-darwin .native-key-bindings':
+  'cmd-z': 'native!'
+  'cmd-Z': 'native!'
+  'cmd-x': 'native!'
+  'cmd-c': 'native!'
+  'cmd-v': 'native!'

keymaps/editor.cson

@@ -1,47 +0,0 @@
-'.editor':
-  'enter': 'editor:newline'
-  'meta-enter': 'editor:newline-below'
-  'meta-shift-enter': 'editor:newline-above'
-  'tab': 'editor:indent'
-  'meta-=': 'editor:auto-indent'
-  'meta-d': 'editor:delete-line'
-
-  'ctrl-[': 'editor:fold-current-row'
-  'ctrl-]': 'editor:unfold-current-row'
-  'ctrl-{': 'editor:fold-all'
-  'ctrl-}': 'editor:unfold-all'
-  'ctrl-meta-1': 'editor:fold-at-indent-level-1'
-  'ctrl-meta-2': 'editor:fold-at-indent-level-2'
-  'ctrl-meta-3': 'editor:fold-at-indent-level-3'
-  'ctrl-meta-4': 'editor:fold-at-indent-level-4'
-  'ctrl-meta-5': 'editor:fold-at-indent-level-5'
-  'ctrl-meta-6': 'editor:fold-at-indent-level-6'
-  'ctrl-meta-7': 'editor:fold-at-indent-level-7'
-  'ctrl-meta-8': 'editor:fold-at-indent-level-8'
-  'ctrl-meta-9': 'editor:fold-at-indent-level-9'
-
-  'alt-shift-down': 'editor:add-selection-below'
-  'alt-shift-up': 'editor:add-selection-above'
-  'alt-meta-ctrl-f': 'editor:fold-selection'
-  'shift-tab': 'editor:outdent-selected-rows'
-  'meta-[': 'editor:outdent-selected-rows'
-  'meta-]': 'editor:indent-selected-rows'
-  'meta-/': 'editor:toggle-line-comments'
-  'ctrl-W': 'editor:select-word'
-  'meta-alt-p': 'editor:log-cursor-scope'
-  'meta-u': 'editor:upper-case'
-  'meta-U': 'editor:lower-case'
-  'ctrl-C': 'editor:copy-path'
-  'ctrl-meta-up': 'editor:move-line-up'
-  'ctrl-meta-down': 'editor:move-line-down'
-  'meta-D': 'editor:duplicate-line'
-  'ctrl-J': 'editor:join-line'
-  'meta-<': 'editor:scroll-to-cursor'
-
-'.editor.mini':
-  'enter': 'core:confirm',
-  'escape': 'core:cancel'
-  'meta-w': 'core:cancel'
-
-'.editor !important, .editor.mini !important':
-  'escape': 'editor:consolidate-selections'

keymaps/emacs.cson

@@ -1,33 +1,7 @@
-'body':
-  'ctrl-p': 'core:move-up'
-  'ctrl-n': 'core:move-down'
-  'ctrl-b': 'core:move-left'
-  'ctrl-f': 'core:move-right'
-  'ctrl-P': 'core:select-up'
-  'ctrl-N': 'core:select-down'
-  'ctrl-F': 'core:select-right'
-  'ctrl-B': 'core:select-left'
-  'alt-ctrl-n': 'editor:add-selection-below'
-  'alt-ctrl-p': 'editor:add-selection-above'
-  'ctrl-h': 'core:backspace'
-  'ctrl-d': 'core:delete'
-
 '.editor':
   'alt-f': 'editor:move-to-end-of-word'
   'alt-F': 'editor:select-to-end-of-word'
   'alt-b': 'editor:move-to-beginning-of-word'
   'alt-B': 'editor:select-to-beginning-of-word'
-  'ctrl-a': 'editor:move-to-first-character-of-line'
-  'ctrl-e': 'editor:move-to-end-of-line'
   'alt-h': 'editor:backspace-to-beginning-of-word'
   'alt-d': 'editor:delete-to-end-of-word'
-  'ctrl-k': 'editor:cut-to-end-of-line'
-
-# allow standard input fields to work correctly
-'input:not(.hidden-input)':
-  'ctrl-b': 'native!'
-  'ctrl-f': 'native!'
-  'ctrl-F': 'native!'
-  'ctrl-B': 'native!'
-  'ctrl-h': 'native!'
-  'ctrl-d': 'native!'

keymaps/git.cson

@@ -1,2 +0,0 @@
-'.editor':
-  'alt-meta-z': 'editor:checkout-head-revision'

keymaps/select-list.cson

@@ -1,4 +0,0 @@
-'.select-list .mini.editor':
-  'enter': 'core:confirm'
-  'escape': 'core:cancel'
-  'meta-w': 'core:cancel'

keymaps/win32.cson

@@ -0,0 +1,102 @@
+'.platform-win32':
+  # Atom Specific
+  'enter': 'core:confirm'
+  'escape': 'core:cancel'
+  'up': 'core:move-up'
+  'down': 'core:move-down'
+  'left': 'core:move-left'
+  'right': 'core:move-right'
+  'ctrl-alt-r': 'window:reload'
+  'ctrl-alt-i': 'window:toggle-dev-tools'
+  'ctrl-alt-p': 'window:run-package-specs'
+  'ctrl-alt-s': 'application:run-all-specs'
+
+  # Sublime Parity
+  'ctrl-N': 'application:new-window'
+  'ctrl-W': 'window:close'
+  'ctrl-o': 'application:open'
+  'ctrl-T': 'pane:reopen-closed-item'
+  'ctrl-n': 'application:new-file'
+  'ctrl-s': 'core:save'
+  'ctrl-S': 'core:save-as'
+  'ctrl-w': 'core:close'
+  'ctrl-z': 'core:undo'
+  'ctrl-y': 'core:redo'
+  'ctrl-x': 'core:cut'
+  'ctrl-c': 'core:copy'
+  'ctrl-v': 'core:paste'
+  'shift-up': 'core:select-up'
+  'shift-down': 'core:select-down'
+  'shift-left': 'core:select-left'
+  'shift-right': 'core:select-right'
+  'delete': 'core:delete'
+  'pageup': 'core:page-up'
+  'pagedown': 'core:page-down'
+  'backspace': 'core:backspace'
+  'ctrl-tab': 'pane:show-next-item'
+  'ctrl-shift-tab': 'pane:show-previous-item'
+  'ctrl-shift-up': 'core:move-up'
+  'ctrl-shift-down': 'core:move-down'
+  'ctrl-=': 'window:increase-font-size'
+  'ctrl-+': 'window:increase-font-size'
+  'ctrl--': 'window:decrease-font-size'
+
+  'ctrl-k up': 'pane:split-up' # Atom Specific
+  'ctrl-k down': 'pane:split-down' # Atom Specific
+  'ctrl-k left': 'pane:split-left' # Atom Specific
+  'ctrl-k right': 'pane:split-right' # Atom Specific
+  'ctrl-k ctrl-w': 'pane:close' # Atom Specific
+  'ctrl-k alt-ctrl-w': 'pane:close-other-items' # Atom Specific
+  'ctrl-k ctrl-left': 'window:focus-previous-pane'
+  'ctrl-k ctrl-right': 'window:focus-next-pane'
+
+'.platform-win32 .editor':
+  # Windows specific
+  'ctrl-delete': 'editor:backspace-to-beginning-of-word'
+
+  # Sublime Parity
+  'ctrl-a': 'core:select-all'
+  'ctrl-alt-p': 'editor:log-cursor-scope'
+  'ctrl-k ctrl-u': 'editor:upper-case'
+  'ctrl-k ctrl-l': 'editor:lower-case'
+
+'.platform-win32 .editor:not(.mini)':
+  # Atom specific
+  'alt-ctrl-z': 'editor:checkout-head-revision'
+  'ctrl-<': 'editor:scroll-to-cursor'
+  'alt-ctrl-f': 'editor:fold-selection'
+  'ctrl-=': 'editor:auto-indent'
+
+  # Sublime Parity
+  'ctrl-enter': 'editor:newline-below'
+  'ctrl-shift-enter': 'editor:newline-above'
+  'ctrl-]': 'editor:indent-selected-rows'
+  'ctrl-[': 'editor:outdent-selected-rows'
+  'ctrl-up': 'editor:move-line-up'
+  'ctrl-down': 'editor:move-line-down'
+  'ctrl-/': 'editor:toggle-line-comments'
+  'ctrl-j': 'editor:join-line'
+  'ctrl-D': 'editor:duplicate-line'
+
+  'ctrl-alt-[': 'editor:fold-current-row'
+  'ctrl-alt-]': 'editor:unfold-current-row'
+  'ctrl-alt-{': 'editor:fold-all' # Atom Specific
+  'ctrl-alt-}': 'editor:unfold-all' # Atom Specific
+  'ctrl-k ctrl-0': 'editor:unfold-all'
+  'ctrl-k ctrl-1': 'editor:fold-at-indent-level-1'
+  'ctrl-k ctrl-2': 'editor:fold-at-indent-level-2'
+  'ctrl-k ctrl-3': 'editor:fold-at-indent-level-3'
+  'ctrl-k ctrl-4': 'editor:fold-at-indent-level-4'
+  'ctrl-k ctrl-5': 'editor:fold-at-indent-level-5'
+  'ctrl-k ctrl-6': 'editor:fold-at-indent-level-6'
+  'ctrl-k ctrl-7': 'editor:fold-at-indent-level-7'
+  'ctrl-k ctrl-8': 'editor:fold-at-indent-level-8'
+  'ctrl-k ctrl-9': 'editor:fold-at-indent-level-9'
+
+# allow standard input fields to work correctly
+'.platform-win32 input:not(.hidden-input), .platform-win32 .native-key-bindings':
+  'ctrl-z': 'native!'
+  'ctrl-Z': 'native!'
+  'ctrl-x': 'native!'
+  'ctrl-c': 'native!'
+  'ctrl-v': 'native!'

menus/darwin.cson

@@ -0,0 +1,180 @@
+'menu': [
+  {
+    label: 'Atom'
+    submenu: [
+      { label: 'About Atom', command: 'application:about' }
+      { label: "VERSION", enabled: false }
+      { label: "Install update", command: 'application:install-update', visible: false }
+      { type: 'separator' }
+      { label: 'Preferences...', command: 'application:show-settings' }
+      { type: 'separator' }
+      { label: 'Hide Atom', command: 'application:hide' }
+      { label: 'Hide Others', command: 'application:hide-other-applications' }
+      { label: 'Show All', command: 'application:unhide-all-applications' }
+      { type: 'separator' }
+      { label: 'Quit', command: 'application:quit' }
+    ]
+  }
+  {
+    label: 'File'
+    submenu: [
+      { label: 'New Window', command: 'application:new-window' }
+      { label: 'New File', command: 'application:new-file' }
+      { label: 'Open...', command: 'application:open' }
+      { label: 'Reopen Last Item', command: 'pane:reopen-closed-item' }
+      { type: 'separator' }
+      { label: 'Save', command: 'core:save' }
+      { label: 'Save As...', command: 'core:save-as' }
+      { label: 'Save All', command: 'window:save-all' }
+      { type: 'separator' }
+      { label: 'Close Buffer', command: 'core:close' }
+      { label: 'Close All Buffers', command: 'pane:close' }
+      { label: 'Close Window', command: 'window:close' }
+    ]
+  }
+
+  {
+    label: 'Edit'
+    submenu: [
+      { label: 'Undo', command: 'core:undo' }
+      { label: 'Redo', command: 'core:redo' }
+      { type: 'separator' }
+      { label: 'Cut', command: 'core:cut' }
+      { label: 'Copy', command: 'core:copy' }
+      { label: 'Copy Path', command: 'editor:copy-path' }
+      { label: 'Paste', command: 'core:paste' }
+      { label: 'Select All', command: 'core:select-all' }
+      { type: 'separator' }
+      { label: 'Toggle Comments', command: 'editor:toggle-line-comments' }
+      {
+        label: 'Lines',
+        submenu: [
+          { label: 'Indent', command: 'editor:indent-selected-rows' }
+          { label: 'Outdent', command: 'editor:outdent-selected-rows' }
+          { label: 'Auto Indent', command: 'editor:auto-indent' }
+          { type: 'separator' }
+          { label: 'Move Line Up', command: 'editor:move-line-up' }
+          { label: 'Move Line Down', command: 'editor:move-line-down' }
+          { label: 'Duplicate Line', command: 'editor:duplicate-line' }
+          { label: 'Delete Line', command: 'editor:delete-line' }
+          { label: 'Join Lines', command: 'editor:join-line' }
+        ]
+      }
+      {
+        label: 'Text',
+        submenu: [
+          { label: 'Upper Case', command: 'editor:upper-case' }
+          { label: 'Lower Case', command: 'editor:lower-case' }
+          { type: 'separator' }
+          { label: 'Delete to End of Word', command: 'editor:delete-to-end-of-word' }
+          { label: 'Delete Line', command: 'editor:delete-line' }
+          { type: 'separator' }
+          { label: 'Transpose', command: 'editor:transpose' }
+        ]
+      }
+      {
+        label: 'Folding',
+        submenu: [
+          { label: 'Fold', command: 'editor:fold-current-row' }
+          { label: 'Unfold', command: 'editor:unfold-current-row' }
+          { label: 'Unfold All', command: 'editor:unfold-all' }
+          { type: 'separator' }
+          { label: 'Fold All', command: 'editor:fold-all' }
+          { label: 'Fold Level 1', command: 'editor:fold-at-indent-level-1' }
+          { label: 'Fold Level 2', command: 'editor:fold-at-indent-level-2' }
+          { label: 'Fold Level 3', command: 'editor:fold-at-indent-level-3' }
+          { label: 'Fold Level 4', command: 'editor:fold-at-indent-level-4' }
+          { label: 'Fold Level 5', command: 'editor:fold-at-indent-level-5' }
+          { label: 'Fold Level 6', command: 'editor:fold-at-indent-level-6' }
+          { label: 'Fold Level 7', command: 'editor:fold-at-indent-level-7' }
+          { label: 'Fold Level 8', command: 'editor:fold-at-indent-level-8' }
+          { label: 'Fold Level 9', command: 'editor:fold-at-indent-level-9' }
+        ]
+      }
+    ]
+  }
+
+  {
+    label: 'Selection'
+    submenu: [
+      { label: 'Add Selection Above', command: 'editor:add-selection-above' }
+      { label: 'Add Selection Below', command: 'editor:add-selection-below' }
+      { type: 'separator' }
+      { label: 'Select to Top', command: 'core:select-to-top' }
+      { label: 'Select to Bottom', command: 'core:select-to-bottom' }
+      { type: 'separator' }
+      { label: 'Select Line', command: 'editor:select-line' }
+      { label: 'Select Word', command: 'editor:select-word' }
+      { label: 'Select to Beginning of Word', command: 'editor:select-to-beginning-of-word' }
+      { label: 'Select to Beginning of Line', command: 'editor:select-to-beginning-of-line' }
+      { label: 'Select to First Character of Line', command: 'editor:select-to-first-character-of-line' }
+      { label: 'Select to End of Word', command: 'editor:select-to-end-of-word' }
+      { label: 'Select to End of Line', command: 'editor:select-to-end-of-line' }
+    ]
+  }
+
+  {
+    label: 'Movement'
+    submenu: [
+      { label: 'Move to Top', command: 'core:move-to-top' }
+      { label: 'Move to Bottom', command: 'core:move-to-bottom' }
+      { type: 'separator' }
+      { label: 'Move to Beginning of Line', command: 'editor:move-to-beginning-of-line' }
+      { label: 'Move to First Character of Line', command: 'editor:move-to-first-character-of-line' }
+      { label: 'Move to End of Line', command: 'editor:move-to-end-of-line' }
+      { type: 'separator' }
+      { label: 'Move to Beginning of Word', command: 'editor:move-to-beginning-of-word' }
+      { label: 'Move to End of Word', command: 'editor:move-to-end-of-word' }
+      { label: 'Move to Next Word', command: 'editor:move-to-next-word-boundary' }
+      { label: 'Move to Previous Word', command: 'editor:move-to-previous-word-boundary' }
+    ]
+  }
+
+  {
+    label: 'Find'
+    submenu: []
+  }
+
+  {
+    label: 'View'
+    submenu: [
+      { label: 'Reload', command: 'window:reload' }
+      { label: 'Toggle Full Screen', command: 'window:toggle-full-screen' }
+      {
+        label: 'Developer'
+        submenu: [
+          { label: 'Open In Dev Mode...', command: 'application:open-dev' }
+          { label: 'Run Atom Specs', command: 'application:run-all-specs' }
+          { label: 'Run Package Specs', command: 'window:run-package-specs' }
+          { label: 'Toggle Developer Tools', command: 'window:toggle-dev-tools' }
+        ]
+      }
+      { type: 'separator' }
+      { label: 'Toggle Soft Wrap', command: 'editor:toggle-soft-wrap' }
+    ]
+  }
+
+  {
+    label: 'Packages'
+    submenu: []
+  }
+
+  {
+    label: 'Window'
+    submenu: [
+      { label: 'Minimize', command: 'application:minimize' }
+      { label: 'Zoom', command: 'application:zoom' }
+      { type: 'separator' }
+      { label: 'Bring All to Front', command: 'application:bring-all-windows-to-front' }
+    ]
+  }
+
+  {
+    label: 'Help'
+    submenu: [
+      { label: 'Documentation', command: 'application:open-documentation' }
+      { label: 'Report an Issue', command: 'application:report-issue' }
+      { type: 'separator' }
+    ]
+  }
+]

menus/win32.cson

@@ -0,0 +1,172 @@
+'menu': [
+  {
+    label: '&File'
+    submenu: [
+      { label: 'New &Window', command: 'application:new-window' }
+      { label: '&New File', command: 'application:new-file' }
+      { label: '&Open...', command: 'application:open' }
+      { label: 'Reopen Last &Item', command: 'pane:reopen-closed-item' }
+      { type: 'separator' }
+      { label: '&Preferences...', command: 'application:show-settings' }
+      { type: 'separator' }
+      { label: '&Save', command: 'core:save' }
+      { label: 'Save &As...', command: 'core:save-as' }
+      { label: 'Save A&ll', command: 'window:save-all' }
+      { type: 'separator' }
+      { label: '&Close Buffer', command: 'core:close' }
+      { label: 'Close All &Buffers', command: 'pane:close' }
+      { label: 'Clos&e Window', command: 'window:close' }
+      { type: 'separator' }
+      { label: 'E&xit', command: 'application:quit' }
+    ]
+  }
+
+  {
+    label: '&Edit'
+    submenu: [
+      { label: '&Undo', command: 'core:undo' }
+      { label: '&Redo', command: 'core:redo' }
+      { type: 'separator' }
+      { label: '&Cut', command: 'core:cut' }
+      { label: 'C&opy', command: 'core:copy' }
+      { label: 'Copy Pat&h', command: 'editor:copy-path' }
+      { label: '&Paste', command: 'core:paste' }
+      { label: 'Select &All', command: 'core:select-all' }
+      { type: 'separator' }
+      { label: '&Toggle Comments', command: 'editor:toggle-line-comments' }
+      {
+        label: 'Lines',
+        submenu: [
+          { label: '&Indent', command: 'editor:indent-selected-rows' }
+          { label: '&Outdent', command: 'editor:outdent-selected-rows' }
+          { label: '&Auto Indent', command: 'editor:auto-indent' }
+          { type: 'separator' }
+          { label: 'Move Line &Up', command: 'editor:move-line-up' }
+          { label: 'Move Line &Down', command: 'editor:move-line-down' }
+          { label: 'Du&plicate Line', command: 'editor:duplicate-line' }
+          { label: 'D&elete Line', command: 'editor:delete-line' }
+          { label: '&Join Lines', command: 'editor:join-line' }
+        ]
+      }
+      {
+        label: 'Text',
+        submenu: [
+          { label: '&Upper Case', command: 'editor:upper-case' }
+          { label: '&Lower Case', command: 'editor:lower-case' }
+          { type: 'separator' }
+          { label: 'Delete to End of &Word', command: 'editor:delete-to-end-of-word' }
+          { label: '&Delete Line', command: 'editor:delete-line' }
+          { type: 'separator' }
+          { label: '&Transpose', command: 'editor:transpose' }
+        ]
+      }
+      {
+        label: 'Folding',
+        submenu: [
+          { label: '&Fold', command: 'editor:fold-current-row' }
+          { label: '&Unfold', command: 'editor:unfold-current-row' }
+          { label: 'Unfold &All', command: 'editor:unfold-all' }
+          { type: 'separator' }
+          { label: 'Fol&d All', command: 'editor:fold-all' }
+          { label: 'Fold Level 1', command: 'editor:fold-at-indent-level-1' }
+          { label: 'Fold Level 2', command: 'editor:fold-at-indent-level-2' }
+          { label: 'Fold Level 3', command: 'editor:fold-at-indent-level-3' }
+          { label: 'Fold Level 4', command: 'editor:fold-at-indent-level-4' }
+          { label: 'Fold Level 5', command: 'editor:fold-at-indent-level-5' }
+          { label: 'Fold Level 6', command: 'editor:fold-at-indent-level-6' }
+          { label: 'Fold Level 7', command: 'editor:fold-at-indent-level-7' }
+          { label: 'Fold Level 8', command: 'editor:fold-at-indent-level-8' }
+          { label: 'Fold Level 9', command: 'editor:fold-at-indent-level-9' }
+        ]
+      }
+    ]
+  }
+
+  {
+    label: '&View'
+    submenu: [
+      { label: '&Reload', command: 'window:reload' }
+      { label: 'Toggle &Full Screen', command: 'window:toggle-full-screen' }
+      {
+        label: 'Developer'
+        submenu: [
+          { label: 'Open In &Dev Mode...', command: 'application:open-dev' }
+          { label: 'Run &Atom Specs', command: 'application:run-all-specs' }
+          { label: 'Run Package &Specs', command: 'window:run-package-specs' }
+          { label: 'Toggle Developer &Tools', command: 'window:toggle-dev-tools' }
+        ]
+      }
+      { type: 'separator' }
+      { label: 'Toggle Soft &Wrap', command: 'editor:toggle-soft-wrap' }
+    ]
+  }
+
+  {
+    label: '&Selection'
+    submenu: [
+      { label: 'Add Selection &Above', command: 'editor:add-selection-above' }
+      { label: 'Add Selection &Below', command: 'editor:add-selection-below' }
+      { type: 'separator' }
+      { label: 'Select to &Top', command: 'core:select-to-top' }
+      { label: 'Select to Botto&m', command: 'core:select-to-bottom' }
+      { type: 'separator' }
+      { label: 'Select &Line', command: 'editor:select-line' }
+      { label: 'Select &Word', command: 'editor:select-word' }
+      { label: 'Select to Beginning of W&ord', command: 'editor:select-to-beginning-of-word' }
+      { label: 'Select to Beginning of L&ine', command: 'editor:select-to-beginning-of-line' }
+      { label: 'Select to First &Character of Line', command: 'editor:select-to-first-character-of-line' }
+      { label: 'Select to End of Wor&d', command: 'editor:select-to-end-of-word' }
+      { label: 'Select to End of Lin&e', command: 'editor:select-to-end-of-line' }
+    ]
+  }
+
+  {
+    label: '&Movement'
+    submenu: [
+      { label: 'Move to &Top', command: 'core:move-to-top' }
+      { label: 'Move to &Bottom', command: 'core:move-to-bottom' }
+      { type: 'separator' }
+      { label: 'Move to Beginning of &Line', command: 'editor:move-to-beginning-of-line' }
+      { label: 'Move to &First Character of Line', command: 'editor:move-to-first-character-of-line' }
+      { label: 'Move to &End of Line', command: 'editor:move-to-end-of-line' }
+      { type: 'separator' }
+      { label: 'Move to Beginning of &Word', command: 'editor:move-to-beginning-of-word' }
+      { label: 'Move to End of Wor&d', command: 'editor:move-to-end-of-word' }
+      { label: 'Move to &Next Word', command: 'editor:move-to-next-word-boundary' }
+      { label: 'Move to &Previous Word', command: 'editor:move-to-previous-word-boundary' }
+    ]
+  }
+
+  {
+    label: 'F&ind'
+    submenu: []
+  }
+
+  {
+    label: '&Packages'
+    submenu: []
+  }
+
+  {
+    label: '&Window'
+    submenu: [
+      { label: 'Mi&nimize', command: 'application:minimize' }
+      { label: 'Ma&ximize', command: 'application:zoom' }
+      { type: 'separator' }
+      { label: 'Bring &All to Front', command: 'application:bring-all-windows-to-front' }
+    ]
+  }
+
+  {
+    label: '&Help'
+    submenu: [
+      { label: '&About Atom...', command: 'application:about' }
+      { label: "VERSION", enabled: false }
+      { label: "Install &update", command: 'application:install-update', visible: false }
+      { type: 'separator' }
+      { label: '&Documentation', command: 'application:open-documentation' }
+      { label: 'Report an &Issue', command: 'application:report-issue' }
+      { type: 'separator' }
+    ]
+  }
+]

package.json

@@ -1,7 +1,7 @@
 {
   "name": "atom",
-  "version": "26.0.0",
-  "main": "./src/main.js",
+  "version": "39.0.0",
+  "main": "./src/browser/main.js",
   "repository": {
     "type": "git",
     "url": "https://github.com/atom/atom.git"
@@ -9,120 +9,143 @@
   "bugs": {
     "url": "https://github.com/atom/atom/issues"
   },
-  "atomShellVersion": "0.4.5",
+  "atomShellVersion": "0.6.11",
   "dependencies": {
     "async": "0.2.6",
-    "coffee-script": "1.6.2",
-    "coffeestack": "0.4.0",
-    "first-mate": "0.1.0",
-    "git-utils": "0.24.0",
+    "bootstrap": "git://github.com/benogle/bootstrap.git",
+    "clear-cut": "0.2.0",
+    "coffee-script": "1.6.3",
+    "coffeestack": "0.6.0",
+    "emissary": "0.19.0",
+    "first-mate": "0.5.0",
+    "fs-plus": "0.9.0",
+    "fuzzaldrin": "0.1.0",
+    "git-utils": "0.29.0",
     "guid": "0.0.10",
-    "jasmine-focused": "~0.12.0",
+    "jasmine-focused": "~0.15.0",
     "mkdirp": "0.3.5",
-    "less": "git://github.com/nathansobo/less.js.git",
-    "nak": "0.2.18",
+    "less-cache": "0.10.0",
     "nslog": "0.1.0",
-    "oniguruma": "0.20.0",
+    "oniguruma": "0.24.0",
     "optimist": "0.4.0",
-    "pathwatcher": "0.5.0",
-    "patrick": "0.4.0",
+    "pathwatcher": "0.10.0",
     "pegjs": "0.7.0",
-    "plist": "git://github.com/nathansobo/node-plist.git",
-    "rimraf": "2.1.4",
-    "season": "0.12.0",
+    "q": "0.9.7",
+    "scandal": "0.8.0",
+    "season": "0.14.0",
     "semver": "1.1.4",
-    "space-pen": "1.2.0",
-    "tantamount": "0.3.0",
-    "telepath": "0.1.2",
+    "space-pen": "2.0.0",
+    "telepath": "0.45.0",
     "temp": "0.5.0",
-    "underscore": "1.4.4",
-    "archive-view": "0.3.0",
-    "autocomplete": "0.4.0",
-    "autoflow": "0.1.0",
-    "bookmarks": "0.2.0",
-    "bracket-matcher": "0.3.0",
-    "collaboration": "0.9.0",
-    "command-logger": "0.2.0",
-    "command-panel": "0.2.0",
-    "command-palette": "0.1.0",
-    "fuzzy-finder": "0.3.0",
-    "editor-stats": "0.1.0",
-    "gfm": "0.3.0",
-    "git-diff": "0.2.0",
-    "gists": "0.1.0",
-    "github-sign-in": "0.1.0",
-    "go-to-line": "0.2.0",
-    "grammar-selector": "0.2.0",
-    "image-view": "0.3.0",
-    "link": "0.1.0",
-    "markdown-preview": "0.2.0",
-    "package-generator": "0.4.0",
-    "settings-view": "0.11.0",
-    "snippets": "0.2.0",
-    "spell-check": "0.3.0",
-    "status-bar": "0.3.0",
-    "symbols-view": "0.4.0",
-    "tabs": "0.2.0",
-    "terminal": "0.7.0",
-    "to-the-hubs": "0.1.0",
-    "toml": "0.1.0",
-    "tree-view": "0.2.1",
-    "whitespace": "0.3.0",
-    "wrap-guide": "0.1.0",
-    "c-tmbundle": "1.0.0",
-    "coffee-script-tmbundle": "6.0.0",
-    "css-tmbundle": "1.0.0",
-    "git-tmbundle": "1.0.0",
-    "go-tmbundle": "1.0.0",
-    "html-tmbundle": "1.0.0",
-    "hyperlink-helper-tmbundle": "1.0.0",
-    "java-tmbundle": "1.0.0",
-    "javascript-tmbundle": "1.0.0",
-    "json-tmbundle": "1.0.0",
-    "less-tmbundle": "1.0.0",
-    "make-tmbundle": "1.0.0",
-    "mustache-tmbundle": "1.0.0",
-    "objective-c-tmbundle": "1.0.0",
-    "pegjs-tmbundle": "1.0.0",
-    "perl-tmbundle": "1.0.0",
-    "php-tmbundle": "1.0.0",
-    "property-list-tmbundle": "1.0.0",
-    "puppet-textmate-tmbundle": "1.0.0",
-    "python-tmbundle": "1.0.0",
-    "ruby-on-rails-tmbundle": "1.0.0",
-    "ruby-tmbundle": "1.0.0",
-    "sass-tmbundle": "1.0.0",
-    "shellscript-tmbundle": "1.0.0",
-    "source-tmbundle": "1.0.0",
-    "sql-tmbundle": "1.0.0",
-    "text-tmbundle": "1.0.0",
-    "textmate-clojure": "1.0.0",
-    "todo-tmbundle": "1.0.0",
-    "xml-tmbundle": "1.0.0",
-    "yaml-tmbundle": "1.0.0"
+    "underscore-plus": "0.3.0"
   },
   "devDependencies": {
-    "biscotto": "0.0.16",
+    "biscotto": "0.0.17",
+    "formidable": "~1.0.14",
+    "fstream": "0.1.24",
     "grunt": "~0.4.1",
     "grunt-cli": "~0.1.9",
-    "grunt-coffeelint": "0.0.6",
+    "grunt-coffeelint": "git://github.com/atom/grunt-coffeelint.git",
     "grunt-lesslint": "0.13.0",
     "grunt-cson": "0.5.0",
     "grunt-contrib-csslint": "~0.1.2",
     "grunt-contrib-coffee": "~0.7.0",
-    "grunt-contrib-less": "~0.6.4",
+    "grunt-contrib-less": "~0.8.0",
     "walkdir": "0.0.7",
-    "ws": "0.4.27",
     "js-yaml": "~2.1.0",
     "grunt-markdown": "~0.4.0",
     "json-front-matter": "~0.1.3",
     "grunt-shell": "~0.3.1",
     "jasmine-node": "git://github.com/kevinsawicki/jasmine-node.git#short-stacks",
-    "request": "~2.27.0"
+    "jasmine-tagged": "0.2.0",
+    "request": "~2.27.0",
+    "unzip": "~0.1.9",
+    "rcedit": "~0.1.2",
+    "rimraf": "~2.2.2"
+  },
+  "packageDependencies": {
+    "atom-light-ui": "0.8.0",
+    "atom-light-syntax": "0.6.0",
+    "atom-dark-ui": "0.8.0",
+    "atom-dark-syntax": "0.6.0",
+    "base16-tomorrow-dark-theme": "0.6.0",
+    "solarized-dark-syntax": "0.4.0",
+    "archive-view": "0.14.0",
+    "autocomplete": "0.15.0",
+    "autoflow": "0.9.0",
+    "autosave": "0.7.0",
+    "bookmarks": "0.13.0",
+    "bracket-matcher": "0.12.0",
+    "command-logger": "0.7.0",
+    "command-palette": "0.10.0",
+    "dev-live-reload": "0.17.0",
+    "editor-stats": "0.7.0",
+    "exception-reporting": "0.8.0",
+    "find-and-replace": "0.49.0",
+    "fuzzy-finder": "0.25.0",
+    "gists": "0.11.0",
+    "git-diff": "0.16.0",
+    "github-sign-in": "0.11.0",
+    "go-to-line": "0.10.0",
+    "grammar-selector": "0.11.0",
+    "image-view": "0.9.0",
+    "keybinding-resolver": "0.5.0",
+    "link": "0.9.0",
+    "markdown-preview": "0.19.0",
+    "metrics": "0.12.0",
+    "package-generator": "0.21.0",
+    "release-notes": "0.12.0",
+    "settings-view": "0.47.0",
+    "snippets": "0.15.0",
+    "spell-check": "0.15.0",
+    "status-bar": "0.22.0",
+    "styleguide": "0.15.0",
+    "symbols-view": "0.24.0",
+    "tabs": "0.12.0",
+    "terminal": "0.22.0",
+    "timecop": "0.10.0",
+    "to-the-hubs": "0.13.0",
+    "tree-view": "0.39.0",
+    "visual-bell": "0.4.0",
+    "whitespace": "0.9.0",
+    "wrap-guide": "0.6.0",
+    "language-c": "0.2.0",
+    "language-clojure": "0.1.0",
+    "language-coffee-script": "0.3.0",
+    "language-css": "0.2.0",
+    "language-gfm": "0.9.0",
+    "language-git": "0.3.0",
+    "language-go": "0.2.0",
+    "language-html": "0.2.0",
+    "language-hyperlink": "0.3.0",
+    "language-java": "0.2.0",
+    "language-javascript": "0.3.0",
+    "language-json": "0.2.0",
+    "language-less": "0.1.0",
+    "language-make": "0.1.0",
+    "language-mustache": "0.1.0",
+    "language-objective-c": "0.2.0",
+    "language-pegjs": "0.1.0",
+    "language-perl": "0.2.0",
+    "language-php": "0.2.0",
+    "language-property-list": "0.2.0",
+    "language-puppet": "0.2.0",
+    "language-python": "0.2.0",
+    "language-ruby": "0.4.0",
+    "language-ruby-on-rails": "0.3.0",
+    "language-sass": "0.3.0",
+    "language-shellscript": "0.2.0",
+    "language-source": "0.2.0",
+    "language-sql": "0.2.0",
+    "language-text": "0.2.0",
+    "language-todo": "0.2.0",
+    "language-toml": "0.7.0",
+    "language-xml": "0.2.0",
+    "language-yaml": "0.1.0"
   },
   "private": true,
   "scripts": {
-    "preinstall": "true",
-    "test": "grunt test"
+    "preinstall": "node -e 'process.exit(0)'",
+    "test": "node script/test"
   }
 }

script/bootstrap

@@ -1,22 +1,38 @@
-#!/bin/sh
+#!/usr/bin/env node
+var safeExec = require('./utils/child-process-wrapper.js').safeExec;
+var path = require('path');
 
-# exit on subprocess errors
-set -o errexit
-
-exit_unless_npm_exists() {
-  if ! hash npm 2> /dev/null; then
-    echo "ERROR: Atom requires npm"
-    exit 1
-  fi
+// Executes an array of commands one by one.
+function executeCommands(commands, done, index) {
+  index = (index == undefined ? 0 : index);
+  if (index < commands.length) {
+    var command = commands[index];
+    var options = null;
+    if (typeof command !== 'string') {
+      options = command.options;
+      command = command.command;
+    }
+    safeExec(command, options, executeCommands.bind(this, commands, done, index + 1));
+  } else
+    done(null);
 }
 
-exit_unless_npm_exists
+// Join multiple commands into one line.
+function joinCommands() {
+  var commandSeparator = process.platform == 'win32' ? '&' : ';';
+  return Array.prototype.slice.call(arguments, 0).join(commandSeparator);
+}
 
-git submodule --quiet sync
-git submodule --quiet update --recursive --init
+var echoNewLine = process.platform == 'win32' ? 'echo.' : 'echo';
+var commands = [
+  'git submodule --quiet sync',
+  'git submodule --quiet update --recursive --init',
+  {command: joinCommands('cd vendor/apm', 'npm install --silent .'), options: {ignoreStdout: true}},
+  {command: 'npm install --silent vendor/apm', options: {ignoreStdout: true}},
+  echoNewLine,
+  'node node_modules/atom-package-manager/bin/apm clean',
+  'node node_modules/atom-package-manager/bin/apm install --silent',
+];
 
-(cd vendor/apm && npm install --silent .)
-
-npm install --silent vendor/apm
-echo ""
-./node_modules/.bin/apm install --silent
+process.chdir(path.dirname(__dirname));
+executeCommands(commands, process.exit);

script/bootstrap.cmd

@@ -0,0 +1,6 @@
+@IF EXIST "%~dp0\node.exe" (
+  "%~dp0\node.exe"  "%~dp0\bootstrap" %*
+) ELSE (
+  node  "%~dp0\bootstrap" %*
+)
+

script/build

@@ -1,8 +1,12 @@
-#!/bin/sh
+#!/usr/bin/env node
+var cp = require('./utils/child-process-wrapper.js');
+var path = require('path');
 
-set -e
+process.chdir(path.dirname(__dirname));
 
-cd "$(dirname "$0")/.."
-
-./script/bootstrap
-./node_modules/.bin/grunt "$@"
+cp.safeExec('node script/bootstrap', function() {
+  // node node_modules/grunt-cli/bin/grunt "$@"
+  var gruntPath = path.join('node_modules', 'grunt-cli', 'bin', 'grunt');
+  var args = [gruntPath].concat(process.argv.slice(2));
+  cp.safeSpawn(process.execPath, args, process.exit);
+});

script/build.cmd

@@ -0,0 +1,5 @@
+@IF EXIST "%~dp0\node.exe" (
+  "%~dp0\node.exe"  "%~dp0\build" %*
+) ELSE (
+  node  "%~dp0\build" %*
+)

script/cibuild

@@ -1,12 +1,39 @@
-#!/bin/sh
+#!/usr/bin/env node
+var cp = require('./utils/child-process-wrapper.js');
+var fs = require('fs');
+var path = require('path');
 
-set -e
+process.chdir(path.dirname(__dirname));
 
-cd "$(dirname "$0")/.."
+if (process.platform != 'darwin')
+  throw new Error('cibuild can not run on ' + process.platform + ' yet!');
 
-rm -rf ~/.atom
-git clean -dff
+var homeDir = process.platform == 'win32' ? process.env.USERPROFILE : process.env.HOME;
 
-./script/bootstrap
-./node_modules/.bin/apm clean
-./node_modules/.bin/grunt ci --stack --no-color
+function readEnvironmentVariables() {
+  var credentialsPath = '/var/lib/jenkins/config/atomcredentials';
+  try {
+    var credentials = fs.readFileSync(credentialsPath, 'utf8');
+    var lines = credentials.trim().split('\n');
+    for (i in lines) {
+      var parts = lines[i].split('=');
+      var key = parts[0].trim();
+      var value = parts[1].trim().substr(1, parts[1].length - 2);
+      process.env[key] = value;
+    }
+  } catch(error) { }
+}
+
+readEnvironmentVariables();
+cp.safeExec.bind(global, 'node script/bootstrap', function(error) {
+  if (error)
+    process.exit(1);
+  var async = require('async');
+  async.series([
+    require('rimraf').bind(global, path.join(homeDir, '.atom')),
+    cp.safeExec.bind(global, 'git clean -dff'),
+    cp.safeExec.bind(global, 'node node_modules/grunt-cli/bin/grunt ci --stack --no-color'),
+  ], function(error) {
+    process.exit(error ? 1 : 0);
+  });
+})();

script/constructicon/build

@@ -8,7 +8,7 @@ set -ex
 cd "$(dirname "$0")/../.."
 rm -fr node_modules
 ./script/bootstrap
-./node_modules/.bin/grunt --build-dir="$BUILT_PRODUCTS_DIR" deploy
+./node_modules/.bin/grunt --no-color --build-dir="$BUILT_PRODUCTS_DIR" deploy
 
 echo "TARGET_BUILD_DIR=$BUILT_PRODUCTS_DIR"
 echo "FULL_PRODUCT_NAME=Atom.app"

script/test

@@ -1,8 +1,9 @@
-#!/bin/sh
+#!/usr/bin/env node
+var safeExec = require('./utils/child-process-wrapper.js').safeExec;
+var path = require('path');
 
-set -e
+process.chdir(path.dirname(__dirname));
 
-cd "$(dirname "$0")/.."
-
-./script/bootstrap
-./node_modules/.bin/grunt ci --stack --no-color
+safeExec('node script/bootstrap', function() {
+  safeExec('node node_modules/grunt-cli/bin/grunt ci --stack --no-color', process.exit);
+});

script/utils/child-process-wrapper.js

@@ -0,0 +1,43 @@
+var childProcess = require('child_process');
+
+// Exit the process if the command failed and only call the callback if the
+// command succeed, output of the command would also be piped.
+exports.safeExec = function(command, options, callback) {
+  if (!callback) {
+    callback = options;
+    options = {};
+  }
+  if (!options)
+    options = {};
+
+  // This needed to be increased for `apm test` runs that generate many failures
+  // The default is 200KB.
+  options.maxBuffer = 1024 * 1024;
+
+  var child = childProcess.exec(command, options, function(error, stdout, stderr) {
+    if (error)
+      process.exit(error.code || 1);
+    else
+      callback(null);
+  });
+  child.stderr.pipe(process.stderr);
+  if (!options.ignoreStdout)
+    child.stdout.pipe(process.stdout);
+}
+
+// Same with safeExec but call child_process.spawn instead.
+exports.safeSpawn = function(command, args, options, callback) {
+  if (!callback) {
+    callback = options;
+    options = {};
+  }
+  var child = childProcess.spawn(command, args, options);
+  child.stderr.pipe(process.stderr);
+  child.stdout.pipe(process.stdout);
+  child.on('exit', function(code) {
+    if (code != 0)
+      process.exit(code);
+    else
+      callback(null);
+  });
+}

spec/atom-package-spec.coffee

@@ -0,0 +1,76 @@
+{$} = require 'atom'
+path = require 'path'
+Package = require '../src/package'
+
+describe "AtomPackage", ->
+  describe "theme", ->
+    theme = null
+
+    beforeEach ->
+      $("#jasmine-content").append $("<div class='editor'></div>")
+
+    afterEach ->
+      theme.deactivate() if theme?
+
+    describe "when the theme contains a single style file", ->
+      it "loads and applies css", ->
+        expect($(".editor").css("padding-bottom")).not.toBe "1234px"
+        themePath = atom.project.resolve('packages/theme-with-index-css')
+        theme = Package.load(themePath)
+        theme.activate()
+        expect($(".editor").css("padding-top")).toBe "1234px"
+
+      it "parses, loads and applies less", ->
+        expect($(".editor").css("padding-bottom")).not.toBe "1234px"
+        themePath = atom.project.resolve('packages/theme-with-index-less')
+        theme = Package.load(themePath)
+        theme.activate()
+        expect($(".editor").css("padding-top")).toBe "4321px"
+
+    describe "when the theme contains a package.json file", ->
+      it "loads and applies stylesheets from package.json in the correct order", ->
+        expect($(".editor").css("padding-top")).not.toBe("101px")
+        expect($(".editor").css("padding-right")).not.toBe("102px")
+        expect($(".editor").css("padding-bottom")).not.toBe("103px")
+
+        themePath = atom.project.resolve('packages/theme-with-package-file')
+        theme = Package.load(themePath)
+        theme.activate()
+        expect($(".editor").css("padding-top")).toBe("101px")
+        expect($(".editor").css("padding-right")).toBe("102px")
+        expect($(".editor").css("padding-bottom")).toBe("103px")
+
+    describe "when the theme does not contain a package.json file and is a directory", ->
+      it "loads all stylesheet files in the directory", ->
+        expect($(".editor").css("padding-top")).not.toBe "10px"
+        expect($(".editor").css("padding-right")).not.toBe "20px"
+        expect($(".editor").css("padding-bottom")).not.toBe "30px"
+
+        themePath = atom.project.resolve('packages/theme-without-package-file')
+        theme = Package.load(themePath)
+        theme.activate()
+        expect($(".editor").css("padding-top")).toBe "10px"
+        expect($(".editor").css("padding-right")).toBe "20px"
+        expect($(".editor").css("padding-bottom")).toBe "30px"
+
+    describe "reloading a theme", ->
+      beforeEach ->
+        themePath = atom.project.resolve('packages/theme-with-package-file')
+        theme = Package.load(themePath)
+        theme.activate()
+
+      it "reloads without readding to the stylesheets list", ->
+        expect(theme.getStylesheetPaths().length).toBe 3
+        theme.reloadStylesheet(theme.getStylesheetPaths()[0])
+        expect(theme.getStylesheetPaths().length).toBe 3
+
+    describe "events", ->
+      beforeEach ->
+        themePath = atom.project.resolve('packages/theme-with-package-file')
+        theme = Package.load(themePath)
+        theme.activate()
+
+      it "deactivated event fires on .deactivate()", ->
+        theme.on 'deactivated', spy = jasmine.createSpy()
+        theme.deactivate()
+        expect(spy).toHaveBeenCalled()

spec/atom-protocol-handler-spec.coffee

@@ -0,0 +1,15 @@
+{$} = require 'atom'
+
+describe '"atom" protocol URL', ->
+  it 'sends the file relative in the package as response', ->
+    called = false
+    callback = -> called = true
+    $.ajax
+      url: 'atom://async/package.json'
+      success: callback
+      # In old versions of jQuery, ajax calls to custom protocol would always
+      # be treated as error eventhough the browser thinks it's a success
+      # request.
+      error: callback
+
+    waitsFor 'request to be done', -> called is true

spec/atom-reporter.coffee

@@ -1,13 +1,12 @@
-$ = require 'jquery'
-{View, $$} = require 'space-pen'
-_ = require 'underscore'
+{View, $, $$} = require '../src/space-pen-extensions'
+_ = require 'underscore-plus'
 {convertStackTrace} = require 'coffeestack'
 
 sourceMaps = {}
 formatStackTrace = (stackTrace) ->
   return stackTrace unless stackTrace
 
-  jasminePath = require.resolve('jasmine')
+  jasminePath = require.resolve('../vendor/jasmine')
   jasminePattern = new RegExp("\\(#{_.escapeRegExp(jasminePath)}:\\d+:\\d+\\)\\s*$")
   convertedLines = []
   for line in stackTrace.split('\n')
@@ -92,7 +91,7 @@ class AtomReporter extends View
 
       clearTimeout @timeoutId if @timeoutId?
       @specPopup.show()
-      spec = _.find(window.timedSpecs, (spec) -> description is spec.name)
+      spec = _.find(window.timedSpecs, ({fullName}) -> description is fullName)
       description = "#{description} #{spec.time}ms" if spec
       @specPopup.text description
       {left, top} = element.offset()
@@ -113,7 +112,7 @@ class AtomReporter extends View
       specCount = "#{@completeSpecCount - @skippedCount}/#{@totalSpecCount - @skippedCount} (#{@skippedCount} skipped)"
     else
       specCount = "#{@completeSpecCount}/#{@totalSpecCount}"
-    @specCount.text specCount
+    @specCount[0].textContent = specCount
 
   updateStatusView: (spec) ->
     if @failedCount > 0
@@ -127,7 +126,7 @@ class AtomReporter extends View
 
     time = "#{Math.round((spec.endedAt - @startedAt.getTime()) / 10)}"
     time = "0#{time}" if time.length < 3
-    @time.text "#{time[0...-2]}.#{time[-2..]}s"
+    @time[0].textContent = "#{time[0...-2]}.#{time[-2..]}s"
 
   addSpecs: (specs) ->
     coreSpecs = 0

spec/atom-spec.coffee

@@ -1,121 +1,108 @@
-$ = require 'jquery'
-RootView = require 'root-view'
-{$$} = require 'space-pen'
-fsUtils = require 'fs-utils'
+{$, $$, fs, RootView}  = require 'atom'
 Exec = require('child_process').exec
 path = require 'path'
+ThemeManager = require '../src/theme-manager'
 
 describe "the `atom` global", ->
   beforeEach ->
-    window.rootView = new RootView
-
-  describe "base stylesheet loading", ->
-    beforeEach ->
-      rootView.append $$ -> @div class: 'editor'
-      rootView.attachToDom()
-      atom.themes.load()
-      atom.watchThemes()
-
-    afterEach ->
-      atom.themes.unload()
-      atom.reloadBaseStylesheets()
-
-    it "loads the correct values from the theme's ui-variables file", ->
-      config.set('core.themes', [project.resolve('themes/theme-with-ui-variables')])
-
-      # an override loaded in the base css
-      expect(rootView.css("background-color")).toBe "rgb(0, 0, 255)"
-
-      # from within the theme itself
-      expect($(".editor").css("padding-top")).toBe "150px"
-      expect($(".editor").css("padding-right")).toBe "150px"
-      expect($(".editor").css("padding-bottom")).toBe "150px"
+    atom.rootView = new RootView
 
   describe "package lifecycle methods", ->
     describe ".loadPackage(name)", ->
       describe "when the package has deferred deserializers", ->
         it "requires the package's main module if one of its deferred deserializers is referenced", ->
-          pack = atom.loadPackage('package-with-activation-events')
+          pack = atom.packages.loadPackage('package-with-activation-events')
+          spyOn(pack, 'activateStylesheets').andCallThrough()
           expect(pack.mainModule).toBeNull()
-          object = deserialize({deserializer: 'Foo', data: 5})
+          object = atom.deserializers.deserialize({deserializer: 'Foo', data: 5})
           expect(pack.mainModule).toBeDefined()
           expect(object.constructor.name).toBe 'Foo'
           expect(object.data).toBe 5
+          expect(pack.activateStylesheets).toHaveBeenCalled()
+
+        it "continues if the package has an invalid package.json", ->
+          spyOn(console, 'warn')
+          atom.config.set("core.disabledPackages", [])
+          expect(-> atom.packages.loadPackage("package-with-broken-package-json")).not.toThrow()
+
+        it "continues if the package has an invalid keymap", ->
+          atom.config.set("core.disabledPackages", [])
+          expect(-> atom.packages.loadPackage("package-with-broken-keymap")).not.toThrow()
 
     describe ".unloadPackage(name)", ->
       describe "when the package is active", ->
         it "throws an error", ->
-          pack = atom.activatePackage('package-with-main')
-          expect(atom.isPackageLoaded(pack.name)).toBeTruthy()
-          expect(atom.isPackageActive(pack.name)).toBeTruthy()
-          expect( -> atom.unloadPackage(pack.name)).toThrow()
-          expect(atom.isPackageLoaded(pack.name)).toBeTruthy()
-          expect(atom.isPackageActive(pack.name)).toBeTruthy()
+          pack = atom.packages.activatePackage('package-with-main')
+          expect(atom.packages.isPackageLoaded(pack.name)).toBeTruthy()
+          expect(atom.packages.isPackageActive(pack.name)).toBeTruthy()
+          expect( -> atom.packages.unloadPackage(pack.name)).toThrow()
+          expect(atom.packages.isPackageLoaded(pack.name)).toBeTruthy()
+          expect(atom.packages.isPackageActive(pack.name)).toBeTruthy()
 
       describe "when the package is not loaded", ->
         it "throws an error", ->
-          expect(atom.isPackageLoaded('unloaded')).toBeFalsy()
-          expect( -> atom.unloadPackage('unloaded')).toThrow()
-          expect(atom.isPackageLoaded('unloaded')).toBeFalsy()
+          expect(atom.packages.isPackageLoaded('unloaded')).toBeFalsy()
+          expect( -> atom.packages.unloadPackage('unloaded')).toThrow()
+          expect(atom.packages.isPackageLoaded('unloaded')).toBeFalsy()
 
       describe "when the package is loaded", ->
         it "no longers reports it as being loaded", ->
-          pack = atom.loadPackage('package-with-main')
-          expect(atom.isPackageLoaded(pack.name)).toBeTruthy()
-          atom.unloadPackage(pack.name)
-          expect(atom.isPackageLoaded(pack.name)).toBeFalsy()
+          pack = atom.packages.loadPackage('package-with-main')
+          expect(atom.packages.isPackageLoaded(pack.name)).toBeTruthy()
+          atom.packages.unloadPackage(pack.name)
+          expect(atom.packages.isPackageLoaded(pack.name)).toBeFalsy()
 
     describe ".activatePackage(id)", ->
       describe "atom packages", ->
         describe "when the package has a main module", ->
           describe "when the metadata specifies a main module path˜", ->
             it "requires the module at the specified path", ->
-              mainModule = require('fixtures/packages/package-with-main/main-module')
+              mainModule = require('./fixtures/packages/package-with-main/main-module')
               spyOn(mainModule, 'activate')
-              pack = atom.activatePackage('package-with-main')
+              pack = atom.packages.activatePackage('package-with-main')
               expect(mainModule.activate).toHaveBeenCalled()
               expect(pack.mainModule).toBe mainModule
 
           describe "when the metadata does not specify a main module", ->
             it "requires index.coffee", ->
-              indexModule = require('fixtures/packages/package-with-index/index')
+              indexModule = require('./fixtures/packages/package-with-index/index')
               spyOn(indexModule, 'activate')
-              pack = atom.activatePackage('package-with-index')
+              pack = atom.packages.activatePackage('package-with-index')
               expect(indexModule.activate).toHaveBeenCalled()
               expect(pack.mainModule).toBe indexModule
 
           it "assigns config defaults from the module", ->
-            expect(config.get('package-with-config-defaults.numbers.one')).toBeUndefined()
-            atom.activatePackage('package-with-config-defaults')
-            expect(config.get('package-with-config-defaults.numbers.one')).toBe 1
-            expect(config.get('package-with-config-defaults.numbers.two')).toBe 2
+            expect(atom.config.get('package-with-config-defaults.numbers.one')).toBeUndefined()
+            atom.packages.activatePackage('package-with-config-defaults')
+            expect(atom.config.get('package-with-config-defaults.numbers.one')).toBe 1
+            expect(atom.config.get('package-with-config-defaults.numbers.two')).toBe 2
 
           describe "when the package metadata includes activation events", ->
             [mainModule, pack] = []
 
             beforeEach ->
-              mainModule = require 'fixtures/packages/package-with-activation-events/index'
+              mainModule = require './fixtures/packages/package-with-activation-events/index'
               spyOn(mainModule, 'activate').andCallThrough()
-              AtomPackage = require 'atom-package'
+              AtomPackage = require '../src/atom-package'
               spyOn(AtomPackage.prototype, 'requireMainModule').andCallThrough()
-              pack = atom.activatePackage('package-with-activation-events')
+              pack = atom.packages.activatePackage('package-with-activation-events')
 
             it "defers requiring/activating the main module until an activation event bubbles to the root view", ->
               expect(pack.requireMainModule).not.toHaveBeenCalled()
               expect(mainModule.activate).not.toHaveBeenCalled()
-              rootView.trigger 'activation-event'
+              atom.rootView.trigger 'activation-event'
               expect(mainModule.activate).toHaveBeenCalled()
 
             it "triggers the activation event on all handlers registered during activation", ->
-              rootView.open()
-              editor = rootView.getActiveView()
+              atom.rootView.openSync()
+              editorView = atom.rootView.getActiveView()
               eventHandler = jasmine.createSpy("activation-event")
-              editor.command 'activation-event', eventHandler
-              editor.trigger 'activation-event'
+              editorView.command 'activation-event', eventHandler
+              editorView.trigger 'activation-event'
               expect(mainModule.activate.callCount).toBe 1
               expect(mainModule.activationEventCallCount).toBe 1
               expect(eventHandler.callCount).toBe 1
-              editor.trigger 'activation-event'
+              editorView.trigger 'activation-event'
               expect(mainModule.activationEventCallCount).toBe 2
               expect(eventHandler.callCount).toBe 2
               expect(mainModule.activate.callCount).toBe 1
@@ -124,23 +111,23 @@ describe "the `atom` global", ->
           it "does not throw an exception", ->
             spyOn(console, "error")
             spyOn(console, "warn").andCallThrough()
-            expect(-> atom.activatePackage('package-without-module')).not.toThrow()
+            expect(-> atom.packages.activatePackage('package-without-module')).not.toThrow()
             expect(console.error).not.toHaveBeenCalled()
             expect(console.warn).not.toHaveBeenCalled()
 
         it "passes the activate method the package's previously serialized state if it exists", ->
-          pack = atom.activatePackage("package-with-serialization")
+          pack = atom.packages.activatePackage("package-with-serialization")
           expect(pack.mainModule.someNumber).not.toBe 77
           pack.mainModule.someNumber = 77
-          atom.deactivatePackage("package-with-serialization")
+          atom.packages.deactivatePackage("package-with-serialization")
           spyOn(pack.mainModule, 'activate').andCallThrough()
-          atom.activatePackage("package-with-serialization")
+          atom.packages.activatePackage("package-with-serialization")
           expect(pack.mainModule.activate).toHaveBeenCalledWith({someNumber: 77})
 
         it "logs warning instead of throwing an exception if the package fails to load", ->
-          config.set("core.disabledPackages", [])
+          atom.config.set("core.disabledPackages", [])
           spyOn(console, "warn")
-          expect(-> atom.activatePackage("package-that-throws-an-exception")).not.toThrow()
+          expect(-> atom.packages.activatePackage("package-that-throws-an-exception")).not.toThrow()
           expect(console.warn).toHaveBeenCalled()
 
         describe "keymap loading", ->
@@ -150,169 +137,304 @@ describe "the `atom` global", ->
               element2 = $$ -> @div class: 'test-2'
               element3 = $$ -> @div class: 'test-3'
 
-              expect(keymap.bindingsForElement(element1)['ctrl-z']).toBeUndefined()
-              expect(keymap.bindingsForElement(element2)['ctrl-z']).toBeUndefined()
-              expect(keymap.bindingsForElement(element3)['ctrl-z']).toBeUndefined()
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element1)).toHaveLength 0
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element2)).toHaveLength 0
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element3)).toHaveLength 0
 
-              atom.activatePackage("package-with-keymaps")
+              atom.packages.activatePackage("package-with-keymaps")
 
-              expect(keymap.bindingsForElement(element1)['ctrl-z']).toBe "test-1"
-              expect(keymap.bindingsForElement(element2)['ctrl-z']).toBe "test-2"
-              expect(keymap.bindingsForElement(element3)['ctrl-z']).toBeUndefined()
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element1)[0].command).toBe "test-1"
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element2)[0].command).toBe "test-2"
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element3)).toHaveLength 0
 
           describe "when the metadata contains a 'keymaps' manifest", ->
             it "loads only the keymaps specified by the manifest, in the specified order", ->
               element1 = $$ -> @div class: 'test-1'
               element3 = $$ -> @div class: 'test-3'
 
-              expect(keymap.bindingsForElement(element1)['ctrl-z']).toBeUndefined()
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element1)).toHaveLength 0
 
-              atom.activatePackage("package-with-keymaps-manifest")
+              atom.packages.activatePackage("package-with-keymaps-manifest")
 
-              expect(keymap.bindingsForElement(element1)['ctrl-z']).toBe 'keymap-1'
-              expect(keymap.bindingsForElement(element1)['ctrl-n']).toBe 'keymap-2'
-              expect(keymap.bindingsForElement(element3)['ctrl-y']).toBeUndefined()
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', element1)[0].command).toBe 'keymap-1'
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-n', element1)[0].command).toBe 'keymap-2'
+              expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-y', element3)).toHaveLength 0
+
+        describe "menu loading", ->
+          beforeEach ->
+            atom.contextMenu.definitions = []
+            atom.menu.template = []
+
+          describe "when the metadata does not contain a 'menus' manifest", ->
+            it "loads all the .cson/.json files in the menus directory", ->
+              element = ($$ -> @div class: 'test-1')[0]
+
+              expect(atom.contextMenu.definitionsForElement(element)).toEqual []
+
+              atom.packages.activatePackage("package-with-menus")
+
+              expect(atom.menu.template.length).toBe 2
+              expect(atom.menu.template[0].label).toBe "Second to Last"
+              expect(atom.menu.template[1].label).toBe "Last"
+              expect(atom.contextMenu.definitionsForElement(element)[0].label).toBe "Menu item 1"
+              expect(atom.contextMenu.definitionsForElement(element)[1].label).toBe "Menu item 2"
+              expect(atom.contextMenu.definitionsForElement(element)[2].label).toBe "Menu item 3"
+
+          describe "when the metadata contains a 'menus' manifest", ->
+            it "loads only the menus specified by the manifest, in the specified order", ->
+              element = ($$ -> @div class: 'test-1')[0]
+
+              expect(atom.contextMenu.definitionsForElement(element)).toEqual []
+
+              atom.packages.activatePackage("package-with-menus-manifest")
+
+              expect(atom.menu.template[0].label).toBe "Second to Last"
+              expect(atom.menu.template[1].label).toBe "Last"
+              expect(atom.contextMenu.definitionsForElement(element)[0].label).toBe "Menu item 2"
+              expect(atom.contextMenu.definitionsForElement(element)[1].label).toBe "Menu item 1"
+              expect(atom.contextMenu.definitionsForElement(element)[2]).toBeUndefined()
 
         describe "stylesheet loading", ->
           describe "when the metadata contains a 'stylesheets' manifest", ->
             it "loads stylesheets from the stylesheets directory as specified by the manifest", ->
-              one = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets-manifest/stylesheets/1.css")
-              two = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets-manifest/stylesheets/2.less")
-              three = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets-manifest/stylesheets/3.css")
-              expect(stylesheetElementForId(one)).not.toExist()
-              expect(stylesheetElementForId(two)).not.toExist()
-              expect(stylesheetElementForId(three)).not.toExist()
+              one = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/1.css")
+              two = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/2.less")
+              three = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/3.css")
 
-              atom.activatePackage("package-with-stylesheets-manifest")
+              one = atom.themes.stringToId(one)
+              two = atom.themes.stringToId(two)
+              three = atom.themes.stringToId(three)
 
-              expect(stylesheetElementForId(one)).toExist()
-              expect(stylesheetElementForId(two)).toExist()
-              expect(stylesheetElementForId(three)).not.toExist()
+              expect(atom.themes.stylesheetElementForId(one)).not.toExist()
+              expect(atom.themes.stylesheetElementForId(two)).not.toExist()
+              expect(atom.themes.stylesheetElementForId(three)).not.toExist()
+
+              atom.packages.activatePackage("package-with-stylesheets-manifest")
+
+              expect(atom.themes.stylesheetElementForId(one)).toExist()
+              expect(atom.themes.stylesheetElementForId(two)).toExist()
+              expect(atom.themes.stylesheetElementForId(three)).not.toExist()
               expect($('#jasmine-content').css('font-size')).toBe '1px'
 
           describe "when the metadata does not contain a 'stylesheets' manifest", ->
             it "loads all stylesheets from the stylesheets directory", ->
-              one = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets/stylesheets/1.css")
-              two = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets/stylesheets/2.less")
-              three = fsUtils.resolveOnLoadPath("fixtures/packages/package-with-stylesheets/stylesheets/3.css")
-              expect(stylesheetElementForId(one)).not.toExist()
-              expect(stylesheetElementForId(two)).not.toExist()
-              expect(stylesheetElementForId(three)).not.toExist()
+              one = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/1.css")
+              two = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/2.less")
+              three = require.resolve("./fixtures/packages/package-with-stylesheets/stylesheets/3.css")
 
-              atom.activatePackage("package-with-stylesheets")
-              expect(stylesheetElementForId(one)).toExist()
-              expect(stylesheetElementForId(two)).toExist()
-              expect(stylesheetElementForId(three)).toExist()
+
+              one = atom.themes.stringToId(one)
+              two = atom.themes.stringToId(two)
+              three = atom.themes.stringToId(three)
+
+              expect(atom.themes.stylesheetElementForId(one)).not.toExist()
+              expect(atom.themes.stylesheetElementForId(two)).not.toExist()
+              expect(atom.themes.stylesheetElementForId(three)).not.toExist()
+
+              atom.packages.activatePackage("package-with-stylesheets")
+              expect(atom.themes.stylesheetElementForId(one)).toExist()
+              expect(atom.themes.stylesheetElementForId(two)).toExist()
+              expect(atom.themes.stylesheetElementForId(three)).toExist()
               expect($('#jasmine-content').css('font-size')).toBe '3px'
 
         describe "grammar loading", ->
           it "loads the package's grammars", ->
-            atom.activatePackage('package-with-grammars')
-            expect(syntax.selectGrammar('a.alot').name).toBe 'Alot'
-            expect(syntax.selectGrammar('a.alittle').name).toBe 'Alittle'
+            atom.packages.activatePackage('package-with-grammars')
+            expect(atom.syntax.selectGrammar('a.alot').name).toBe 'Alot'
+            expect(atom.syntax.selectGrammar('a.alittle').name).toBe 'Alittle'
 
         describe "scoped-property loading", ->
           it "loads the scoped properties", ->
-            atom.activatePackage("package-with-scoped-properties")
-            expect(syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBe '^a'
+            atom.packages.activatePackage("package-with-scoped-properties")
+            expect(atom.syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBe '^a'
 
       describe "textmate packages", ->
         it "loads the package's grammars", ->
-          expect(syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
-          atom.activatePackage('ruby-tmbundle', sync: true)
-          expect(syntax.selectGrammar("file.rb").name).toBe "Ruby"
+          expect(atom.syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
+          atom.packages.activatePackage('language-ruby', sync: true)
+          expect(atom.syntax.selectGrammar("file.rb").name).toBe "Ruby"
 
         it "translates the package's scoped properties to Atom terms", ->
-          expect(syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBeUndefined()
-          atom.activatePackage('ruby-tmbundle', sync: true)
-          expect(syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBe '# '
+          expect(atom.syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBeUndefined()
+          atom.packages.activatePackage('language-ruby', sync: true)
+          expect(atom.syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBe '# '
 
         describe "when the package has no grammars but does have preferences", ->
           it "loads the package's preferences as scoped properties", ->
             jasmine.unspy(window, 'setTimeout')
-            spyOn(syntax, 'addProperties').andCallThrough()
+            spyOn(atom.syntax, 'addProperties').andCallThrough()
 
-            atom.activatePackage('package-with-preferences-tmbundle')
+            atom.packages.activatePackage('package-with-preferences-tmbundle')
 
             waitsFor ->
-              syntax.addProperties.callCount > 0
+              atom.syntax.addProperties.callCount > 0
+
             runs ->
-              expect(syntax.getProperty(['.source.pref'], 'editor.increaseIndentPattern')).toBe '^abc$'
+              expect(atom.syntax.getProperty(['.source.pref'], 'editor.increaseIndentPattern')).toBe '^abc$'
 
     describe ".deactivatePackage(id)", ->
       describe "atom packages", ->
         it "calls `deactivate` on the package's main module if activate was successful", ->
-          pack = atom.activatePackage("package-with-deactivate")
-          expect(atom.isPackageActive("package-with-deactivate")).toBeTruthy()
+          pack = atom.packages.activatePackage("package-with-deactivate")
+          expect(atom.packages.isPackageActive("package-with-deactivate")).toBeTruthy()
           spyOn(pack.mainModule, 'deactivate').andCallThrough()
 
-          atom.deactivatePackage("package-with-deactivate")
+          atom.packages.deactivatePackage("package-with-deactivate")
           expect(pack.mainModule.deactivate).toHaveBeenCalled()
-          expect(atom.isPackageActive("package-with-module")).toBeFalsy()
+          expect(atom.packages.isPackageActive("package-with-module")).toBeFalsy()
 
           spyOn(console, 'warn')
-          badPack = atom.activatePackage("package-that-throws-on-activate")
-          expect(atom.isPackageActive("package-that-throws-on-activate")).toBeTruthy()
+          badPack = atom.packages.activatePackage("package-that-throws-on-activate")
+          expect(atom.packages.isPackageActive("package-that-throws-on-activate")).toBeTruthy()
           spyOn(badPack.mainModule, 'deactivate').andCallThrough()
 
-          atom.deactivatePackage("package-that-throws-on-activate")
+          atom.packages.deactivatePackage("package-that-throws-on-activate")
           expect(badPack.mainModule.deactivate).not.toHaveBeenCalled()
-          expect(atom.isPackageActive("package-that-throws-on-activate")).toBeFalsy()
+          expect(atom.packages.isPackageActive("package-that-throws-on-activate")).toBeFalsy()
 
         it "does not serialize packages that have not been activated called on their main module", ->
           spyOn(console, 'warn')
-          badPack = atom.activatePackage("package-that-throws-on-activate")
+          badPack = atom.packages.activatePackage("package-that-throws-on-activate")
           spyOn(badPack.mainModule, 'serialize').andCallThrough()
 
-          atom.deactivatePackage("package-that-throws-on-activate")
+          atom.packages.deactivatePackage("package-that-throws-on-activate")
           expect(badPack.mainModule.serialize).not.toHaveBeenCalled()
 
         it "absorbs exceptions that are thrown by the package module's serialize methods", ->
           spyOn(console, 'error')
-          atom.activatePackage('package-with-serialize-error',  immediate: true)
-          atom.activatePackage('package-with-serialization', immediate: true)
-          atom.deactivatePackages()
-          expect(atom.packageStates['package-with-serialize-error']).toBeUndefined()
-          expect(atom.packageStates['package-with-serialization']).toEqual someNumber: 1
+          atom.packages.activatePackage('package-with-serialize-error',  immediate: true)
+          atom.packages.activatePackage('package-with-serialization', immediate: true)
+          atom.packages.deactivatePackages()
+          expect(atom.packages.packageStates['package-with-serialize-error']).toBeUndefined()
+          expect(atom.packages.packageStates['package-with-serialization']).toEqual someNumber: 1
           expect(console.error).toHaveBeenCalled()
 
         it "removes the package's grammars", ->
-          atom.activatePackage('package-with-grammars')
-          atom.deactivatePackage('package-with-grammars')
-          expect(syntax.selectGrammar('a.alot').name).toBe 'Null Grammar'
-          expect(syntax.selectGrammar('a.alittle').name).toBe 'Null Grammar'
+          atom.packages.activatePackage('package-with-grammars')
+          atom.packages.deactivatePackage('package-with-grammars')
+          expect(atom.syntax.selectGrammar('a.alot').name).toBe 'Null Grammar'
+          expect(atom.syntax.selectGrammar('a.alittle').name).toBe 'Null Grammar'
 
         it "removes the package's keymaps", ->
-          atom.activatePackage('package-with-keymaps')
-          atom.deactivatePackage('package-with-keymaps')
-          expect(keymap.bindingsForElement($$ -> @div class: 'test-1')['ctrl-z']).toBeUndefined()
-          expect(keymap.bindingsForElement($$ -> @div class: 'test-2')['ctrl-z']).toBeUndefined()
+          atom.packages.activatePackage('package-with-keymaps')
+          atom.packages.deactivatePackage('package-with-keymaps')
+          expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', $$ -> @div class: 'test-1')).toHaveLength 0
+          expect(atom.keymap.keyBindingsForKeystrokeMatchingElement('ctrl-z', $$ -> @div class: 'test-2')).toHaveLength 0
 
         it "removes the package's stylesheets", ->
-          atom.activatePackage('package-with-stylesheets')
-          atom.deactivatePackage('package-with-stylesheets')
-          one = fsUtils.resolveOnLoadPath("package-with-stylesheets/stylesheets/1.css")
-          two = fsUtils.resolveOnLoadPath("package-with-stylesheets/stylesheets/2.less")
-          three = fsUtils.resolveOnLoadPath("package-with-stylesheets/stylesheets/3.css")
-          expect(stylesheetElementForId(one)).not.toExist()
-          expect(stylesheetElementForId(two)).not.toExist()
-          expect(stylesheetElementForId(three)).not.toExist()
+          atom.packages.activatePackage('package-with-stylesheets')
+          atom.packages.deactivatePackage('package-with-stylesheets')
+          one = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/1.css")
+          two = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/2.less")
+          three = require.resolve("./fixtures/packages/package-with-stylesheets-manifest/stylesheets/3.css")
+          expect(atom.themes.stylesheetElementForId(one)).not.toExist()
+          expect(atom.themes.stylesheetElementForId(two)).not.toExist()
+          expect(atom.themes.stylesheetElementForId(three)).not.toExist()
 
         it "removes the package's scoped-properties", ->
-          atom.activatePackage("package-with-scoped-properties")
-          expect(syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBe '^a'
-          atom.deactivatePackage("package-with-scoped-properties")
-          expect(syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBeUndefined()
+          atom.packages.activatePackage("package-with-scoped-properties")
+          expect(atom.syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBe '^a'
+          atom.packages.deactivatePackage("package-with-scoped-properties")
+          expect(atom.syntax.getProperty ['.source.omg'], 'editor.increaseIndentPattern').toBeUndefined()
 
       describe "textmate packages", ->
         it "removes the package's grammars", ->
-          expect(syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
-          atom.activatePackage('ruby-tmbundle', sync: true)
-          expect(syntax.selectGrammar("file.rb").name).toBe "Ruby"
-          atom.deactivatePackage('ruby-tmbundle')
-          expect(syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
+          expect(atom.syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
+          atom.packages.activatePackage('language-ruby', sync: true)
+          expect(atom.syntax.selectGrammar("file.rb").name).toBe "Ruby"
+          atom.packages.deactivatePackage('language-ruby')
+          expect(atom.syntax.selectGrammar("file.rb").name).toBe "Null Grammar"
 
         it "removes the package's scoped properties", ->
-          atom.activatePackage('ruby-tmbundle', sync: true)
-          atom.deactivatePackage('ruby-tmbundle')
-          expect(syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBeUndefined()
+          atom.packages.activatePackage('language-ruby', sync: true)
+          atom.packages.deactivatePackage('language-ruby')
+          expect(atom.syntax.getProperty(['.source.ruby'], 'editor.commentStart')).toBeUndefined()
+
+    describe ".activate()", ->
+      packageActivator = null
+      themeActivator = null
+
+      beforeEach ->
+        spyOn(console, 'warn')
+        atom.packages.loadPackages()
+
+        loadedPackages = atom.packages.getLoadedPackages()
+        expect(loadedPackages.length).toBeGreaterThan 0
+
+        packageActivator = spyOn(atom.packages, 'activatePackages')
+        themeActivator = spyOn(atom.themes, 'activatePackages')
+
+      afterEach ->
+        atom.packages.unloadPackages()
+
+        Syntax = require '../src/syntax'
+        atom.syntax = window.syntax = new Syntax()
+
+      it "activates all the packages, and none of the themes", ->
+        atom.packages.activate()
+
+        expect(packageActivator).toHaveBeenCalled()
+        expect(themeActivator).toHaveBeenCalled()
+
+        packages = packageActivator.mostRecentCall.args[0]
+        expect(['atom', 'textmate']).toContain(pack.getType()) for pack in packages
+
+        themes = themeActivator.mostRecentCall.args[0]
+        expect(['theme']).toContain(theme.getType()) for theme in themes
+
+    describe ".en/disablePackage()", ->
+      describe "with packages", ->
+        it ".enablePackage() enables a disabled package", ->
+          packageName = 'package-with-main'
+          atom.config.pushAtKeyPath('core.disabledPackages', packageName)
+          atom.packages.observeDisabledPackages()
+          expect(atom.config.get('core.disabledPackages')).toContain packageName
+
+          pack = atom.packages.enablePackage(packageName)
+
+          loadedPackages = atom.packages.getLoadedPackages()
+          activatedPackages = atom.packages.getActivePackages()
+          expect(loadedPackages).toContain(pack)
+          expect(activatedPackages).toContain(pack)
+          expect(atom.config.get('core.disabledPackages')).not.toContain packageName
+
+        it ".disablePackage() disables an enabled package", ->
+          packageName = 'package-with-main'
+          atom.packages.activatePackage(packageName)
+          atom.packages.observeDisabledPackages()
+          expect(atom.config.get('core.disabledPackages')).not.toContain packageName
+
+          pack = atom.packages.disablePackage(packageName)
+
+          activatedPackages = atom.packages.getActivePackages()
+          expect(activatedPackages).not.toContain(pack)
+          expect(atom.config.get('core.disabledPackages')).toContain packageName
+
+      describe "with themes", ->
+        beforeEach ->
+          atom.themes.activateThemes()
+
+        afterEach ->
+          atom.themes.deactivateThemes()
+          atom.config.unobserve('core.themes')
+
+        it ".enablePackage() and .disablePackage() enables and disables a theme", ->
+          packageName = 'theme-with-package-file'
+
+          expect(atom.config.get('core.themes')).not.toContain packageName
+          expect(atom.config.get('core.disabledPackages')).not.toContain packageName
+
+          # enabling of theme
+          pack = atom.packages.enablePackage(packageName)
+          activatedPackages = atom.packages.getActivePackages()
+          expect(activatedPackages).toContain(pack)
+          expect(atom.config.get('core.themes')).toContain packageName
+          expect(atom.config.get('core.disabledPackages')).not.toContain packageName
+
+          # disabling of theme
+          pack = atom.packages.disablePackage(packageName)
+          activatedPackages = atom.packages.getActivePackages()
+          expect(activatedPackages).not.toContain(pack)
+          expect(atom.config.get('core.themes')).not.toContain packageName
+          expect(atom.config.get('core.themes')).not.toContain packageName
+          expect(atom.config.get('core.disabledPackages')).not.toContain packageName

spec/command-installer-spec.coffee

@@ -1,34 +1,36 @@
-fs = require 'fs'
-fsUtils = require 'fs-utils'
-installer = require 'command-installer'
+{fs} = require 'atom'
+path = require 'path'
+temp = require 'temp'
+installer = require '../src/command-installer'
 
 describe "install(commandPath, callback)", ->
-  directory = '/tmp/install-atom-command/atom'
-  commandPath = "#{directory}/source"
-  destinationPath = "#{directory}/bin/source"
+  directory = path.join(temp.dir, 'install-atom-command', 'atom')
+  commandPath = path.join(directory, 'source')
+  destinationPath = path.join(directory, 'bin', 'source')
 
   beforeEach ->
     spyOn(installer, 'findInstallDirectory').andCallFake (callback) ->
       callback(directory)
 
-    fsUtils.remove(directory) if fsUtils.exists(directory)
+    fs.removeSync(directory) if fs.existsSync(directory)
 
-  it "symlinks the command and makes it executable", ->
-    fsUtils.writeSync(commandPath, 'test')
-    expect(fsUtils.isFileSync(commandPath)).toBeTruthy()
-    expect(fsUtils.isExecutableSync(commandPath)).toBeFalsy()
-    expect(fsUtils.isFileSync(destinationPath)).toBeFalsy()
+  describe "on #darwin", ->
+    it "symlinks the command and makes it executable", ->
+      fs.writeFileSync(commandPath, 'test')
+      expect(fs.isFileSync(commandPath)).toBeTruthy()
+      expect(fs.isExecutableSync(commandPath)).toBeFalsy()
+      expect(fs.isFileSync(destinationPath)).toBeFalsy()
 
-    installDone = false
-    installError = null
-    installer.install commandPath, (error) ->
-      installDone = true
-      installError = error
+      installDone = false
+      installError = null
+      installer.install commandPath, (error) ->
+        installDone = true
+        installError = error
 
-    waitsFor -> installDone
+      waitsFor -> installDone
 
-    runs ->
-      expect(installError).toBeNull()
-      expect(fsUtils.isFileSync(destinationPath)).toBeTruthy()
-      expect(fs.realpathSync(destinationPath)).toBe fs.realpathSync(commandPath)
-      expect(fsUtils.isExecutableSync(destinationPath)).toBeTruthy()
+      runs ->
+        expect(installError).toBeNull()
+        expect(fs.isFileSync(destinationPath)).toBeTruthy()
+        expect(fs.realpathSync(destinationPath)).toBe fs.realpathSync(commandPath)
+        expect(fs.isExecutableSync(destinationPath)).toBeTruthy()

spec/config-spec.coffee

@@ -1,265 +1,303 @@
-fs = require 'fs'
-fsUtils = require 'fs-utils'
+{fs} = require 'atom'
 path = require 'path'
+temp = require 'temp'
 CSON = require 'season'
 
 describe "Config", ->
+  dotAtomPath = path.join(temp.dir, 'dot-atom-dir')
+
   describe ".get(keyPath)", ->
     it "allows a key path's value to be read", ->
-      expect(config.set("foo.bar.baz", 42)).toBe 42
-      expect(config.get("foo.bar.baz")).toBe 42
-      expect(config.get("bogus.key.path")).toBeUndefined()
+      expect(atom.config.set("foo.bar.baz", 42)).toBe 42
+      expect(atom.config.get("foo.bar.baz")).toBe 42
+      expect(atom.config.get("bogus.key.path")).toBeUndefined()
 
     it "returns a deep clone of the key path's value", ->
-      config.set('value', array: [1, b: 2, 3])
-      retrievedValue = config.get('value')
+      atom.config.set('value', array: [1, b: 2, 3])
+      retrievedValue = atom.config.get('value')
       retrievedValue.array[0] = 4
       retrievedValue.array[1].b = 2.1
-      expect(config.get('value')).toEqual(array: [1, b: 2, 3])
+      expect(atom.config.get('value')).toEqual(array: [1, b: 2, 3])
 
   describe ".set(keyPath, value)", ->
     it "allows a key path's value to be written", ->
-      expect(config.set("foo.bar.baz", 42)).toBe 42
-      expect(config.get("foo.bar.baz")).toBe 42
+      expect(atom.config.set("foo.bar.baz", 42)).toBe 42
+      expect(atom.config.get("foo.bar.baz")).toBe 42
 
     it "updates observers and saves when a key path is set", ->
       observeHandler = jasmine.createSpy "observeHandler"
-      config.observe "foo.bar.baz", observeHandler
+      atom.config.observe "foo.bar.baz", observeHandler
       observeHandler.reset()
 
-      config.set("foo.bar.baz", 42)
+      atom.config.set("foo.bar.baz", 42)
 
-      expect(config.save).toHaveBeenCalled()
-      expect(observeHandler).toHaveBeenCalledWith 42
+      expect(atom.config.save).toHaveBeenCalled()
+      expect(observeHandler).toHaveBeenCalledWith 42, {previous: undefined}
 
     describe "when the value equals the default value", ->
       it "does not store the value", ->
-        config.setDefaults("foo", same: 1, changes: 1)
-        expect(config.settings.foo).toBeUndefined()
-        config.set('foo.same', 1)
-        config.set('foo.changes', 2)
-        expect(config.settings.foo).toEqual {changes: 2}
+        atom.config.setDefaults("foo", same: 1, changes: 1)
+        expect(atom.config.settings.foo).toBeUndefined()
+        atom.config.set('foo.same', 1)
+        atom.config.set('foo.changes', 2)
+        expect(atom.config.settings.foo).toEqual {changes: 2}
 
-        config.set('foo.changes', 1)
-        expect(config.settings.foo).toEqual {}
+        atom.config.set('foo.changes', 1)
+        expect(atom.config.settings.foo).toEqual {}
+
+  describe ".toggle(keyPath)", ->
+    it "negates the boolean value of the current key path value", ->
+      atom.config.set('foo.a', 1)
+      atom.config.toggle('foo.a')
+      expect(atom.config.get('foo.a')).toBe false
+
+      atom.config.set('foo.a', '')
+      atom.config.toggle('foo.a')
+      expect(atom.config.get('foo.a')).toBe true
+
+      atom.config.set('foo.a', null)
+      atom.config.toggle('foo.a')
+      expect(atom.config.get('foo.a')).toBe true
+
+      atom.config.set('foo.a', true)
+      atom.config.toggle('foo.a')
+      expect(atom.config.get('foo.a')).toBe false
 
   describe ".pushAtKeyPath(keyPath, value)", ->
     it "pushes the given value to the array at the key path and updates observers", ->
-      config.set("foo.bar.baz", ["a"])
+      atom.config.set("foo.bar.baz", ["a"])
       observeHandler = jasmine.createSpy "observeHandler"
-      config.observe "foo.bar.baz", observeHandler
+      atom.config.observe "foo.bar.baz", observeHandler
       observeHandler.reset()
 
-      expect(config.pushAtKeyPath("foo.bar.baz", "b")).toBe 2
-      expect(config.get("foo.bar.baz")).toEqual ["a", "b"]
-      expect(observeHandler).toHaveBeenCalledWith config.get("foo.bar.baz")
+      expect(atom.config.pushAtKeyPath("foo.bar.baz", "b")).toBe 2
+      expect(atom.config.get("foo.bar.baz")).toEqual ["a", "b"]
+      expect(observeHandler).toHaveBeenCalledWith atom.config.get("foo.bar.baz"), {previous: ['a']}
+
+  describe ".unshiftAtKeyPath(keyPath, value)", ->
+    it "unshifts the given value to the array at the key path and updates observers", ->
+      atom.config.set("foo.bar.baz", ["b"])
+      observeHandler = jasmine.createSpy "observeHandler"
+      atom.config.observe "foo.bar.baz", observeHandler
+      observeHandler.reset()
+
+      expect(atom.config.unshiftAtKeyPath("foo.bar.baz", "a")).toBe 2
+      expect(atom.config.get("foo.bar.baz")).toEqual ["a", "b"]
+      expect(observeHandler).toHaveBeenCalledWith atom.config.get("foo.bar.baz"), {previous: ['b']}
 
   describe ".removeAtKeyPath(keyPath, value)", ->
     it "removes the given value from the array at the key path and updates observers", ->
-      config.set("foo.bar.baz", ["a", "b", "c"])
+      atom.config.set("foo.bar.baz", ["a", "b", "c"])
       observeHandler = jasmine.createSpy "observeHandler"
-      config.observe "foo.bar.baz", observeHandler
+      atom.config.observe "foo.bar.baz", observeHandler
       observeHandler.reset()
 
-      expect(config.removeAtKeyPath("foo.bar.baz", "b")).toEqual ["a", "c"]
-      expect(config.get("foo.bar.baz")).toEqual ["a", "c"]
-      expect(observeHandler).toHaveBeenCalledWith config.get("foo.bar.baz")
+      expect(atom.config.removeAtKeyPath("foo.bar.baz", "b")).toEqual ["a", "c"]
+      expect(atom.config.get("foo.bar.baz")).toEqual ["a", "c"]
+      expect(observeHandler).toHaveBeenCalledWith atom.config.get("foo.bar.baz"), {previous: ['a', 'b', 'c']}
 
   describe ".getPositiveInt(keyPath, defaultValue)", ->
     it "returns the proper current or default value", ->
-      config.set('editor.preferredLineLength', 0)
-      expect(config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
-      config.set('editor.preferredLineLength', -1234)
-      expect(config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
-      config.set('editor.preferredLineLength', 'abcd')
-      expect(config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
-      config.set('editor.preferredLineLength', null)
-      expect(config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
+      atom.config.set('editor.preferredLineLength', 0)
+      expect(atom.config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
+      atom.config.set('editor.preferredLineLength', -1234)
+      expect(atom.config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
+      atom.config.set('editor.preferredLineLength', 'abcd')
+      expect(atom.config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
+      atom.config.set('editor.preferredLineLength', null)
+      expect(atom.config.getPositiveInt('editor.preferredLineLength', 80)).toBe 80
 
   describe ".save()", ->
+    nodeFs = require 'fs'
+
     beforeEach ->
-      spyOn(fs, 'writeFileSync')
-      jasmine.unspy config, 'save'
+      spyOn(nodeFs, 'writeFileSync')
+      jasmine.unspy atom.config, 'save'
 
     describe "when ~/.atom/config.json exists", ->
       it "writes any non-default properties to ~/.atom/config.json", ->
-        config.configFilePath = path.join(config.configDirPath, "config.json")
-        config.set("a.b.c", 1)
-        config.set("a.b.d", 2)
-        config.set("x.y.z", 3)
-        config.setDefaults("a.b", e: 4, f: 5)
+        atom.config.configFilePath = path.join(atom.config.configDirPath, "atom.config.json")
+        atom.config.set("a.b.c", 1)
+        atom.config.set("a.b.d", 2)
+        atom.config.set("x.y.z", 3)
+        atom.config.setDefaults("a.b", e: 4, f: 5)
 
-        fs.writeFileSync.reset()
-        config.save()
+        nodeFs.writeFileSync.reset()
+        atom.config.save()
 
-        expect(fs.writeFileSync.argsForCall[0][0]).toBe(path.join(config.configDirPath, "config.json"))
-        writtenConfig = JSON.parse(fs.writeFileSync.argsForCall[0][1])
-        expect(writtenConfig).toEqual config.settings
+        expect(nodeFs.writeFileSync.argsForCall[0][0]).toBe(path.join(atom.config.configDirPath, "atom.config.json"))
+        writtenConfig = JSON.parse(nodeFs.writeFileSync.argsForCall[0][1])
+        expect(writtenConfig).toEqual atom.config.settings
 
     describe "when ~/.atom/config.json doesn't exist", ->
       it "writes any non-default properties to ~/.atom/config.cson", ->
-        config.configFilePath = path.join(config.configDirPath, "config.cson")
-        config.set("a.b.c", 1)
-        config.set("a.b.d", 2)
-        config.set("x.y.z", 3)
-        config.setDefaults("a.b", e: 4, f: 5)
+        atom.config.configFilePath = path.join(atom.config.configDirPath, "atom.config.cson")
+        atom.config.set("a.b.c", 1)
+        atom.config.set("a.b.d", 2)
+        atom.config.set("x.y.z", 3)
+        atom.config.setDefaults("a.b", e: 4, f: 5)
 
-        fs.writeFileSync.reset()
-        config.save()
+        nodeFs.writeFileSync.reset()
+        atom.config.save()
 
-        expect(fs.writeFileSync.argsForCall[0][0]).toBe(path.join(config.configDirPath, "config.cson"))
+        expect(nodeFs.writeFileSync.argsForCall[0][0]).toBe(path.join(atom.config.configDirPath, "atom.config.cson"))
         CoffeeScript = require 'coffee-script'
-        writtenConfig = CoffeeScript.eval(fs.writeFileSync.argsForCall[0][1], bare: true)
-        expect(writtenConfig).toEqual config.settings
+        writtenConfig = CoffeeScript.eval(nodeFs.writeFileSync.argsForCall[0][1], bare: true)
+        expect(writtenConfig).toEqual atom.config.settings
 
   describe ".setDefaults(keyPath, defaults)", ->
     it "assigns any previously-unassigned keys to the object at the key path", ->
-      config.set("foo.bar.baz", a: 1)
-      config.setDefaults("foo.bar.baz", a: 2, b: 3, c: 4)
-      expect(config.get("foo.bar.baz.a")).toBe 1
-      expect(config.get("foo.bar.baz.b")).toBe 3
-      expect(config.get("foo.bar.baz.c")).toBe 4
+      atom.config.set("foo.bar.baz", a: 1)
+      atom.config.setDefaults("foo.bar.baz", a: 2, b: 3, c: 4)
+      expect(atom.config.get("foo.bar.baz.a")).toBe 1
+      expect(atom.config.get("foo.bar.baz.b")).toBe 3
+      expect(atom.config.get("foo.bar.baz.c")).toBe 4
 
-      config.setDefaults("foo.quux", x: 0, y: 1)
-      expect(config.get("foo.quux.x")).toBe 0
-      expect(config.get("foo.quux.y")).toBe 1
+      atom.config.setDefaults("foo.quux", x: 0, y: 1)
+      expect(atom.config.get("foo.quux.x")).toBe 0
+      expect(atom.config.get("foo.quux.y")).toBe 1
 
   describe ".observe(keyPath)", ->
-    observeHandler = null
+    [observeHandler, observeSubscription] = []
 
     beforeEach ->
       observeHandler = jasmine.createSpy("observeHandler")
-      config.set("foo.bar.baz", "value 1")
-      config.observe "foo.bar.baz", observeHandler
+      atom.config.set("foo.bar.baz", "value 1")
+      observeSubscription = atom.config.observe "foo.bar.baz", observeHandler
 
     it "fires the given callback with the current value at the keypath", ->
       expect(observeHandler).toHaveBeenCalledWith("value 1")
 
     it "fires the callback every time the observed value changes", ->
       observeHandler.reset() # clear the initial call
-      config.set('foo.bar.baz', "value 2")
-      expect(observeHandler).toHaveBeenCalledWith("value 2")
+      atom.config.set('foo.bar.baz', "value 2")
+      expect(observeHandler).toHaveBeenCalledWith("value 2", {previous: 'value 1'})
       observeHandler.reset()
 
-      config.set('foo.bar.baz', "value 1")
-      expect(observeHandler).toHaveBeenCalledWith("value 1")
+      atom.config.set('foo.bar.baz', "value 1")
+      expect(observeHandler).toHaveBeenCalledWith("value 1", {previous: 'value 2'})
 
     it "fires the callback when the observed value is deleted", ->
       observeHandler.reset() # clear the initial call
-      config.set('foo.bar.baz', undefined)
-      expect(observeHandler).toHaveBeenCalledWith(undefined)
+      atom.config.set('foo.bar.baz', undefined)
+      expect(observeHandler).toHaveBeenCalledWith(undefined, {previous: 'value 1'})
 
     it "fires the callback when the full key path goes into and out of existence", ->
       observeHandler.reset() # clear the initial call
-      config.set("foo.bar", undefined)
+      atom.config.set("foo.bar", undefined)
 
-      expect(observeHandler).toHaveBeenCalledWith(undefined)
+      expect(observeHandler).toHaveBeenCalledWith(undefined, {previous: 'value 1'})
       observeHandler.reset()
 
-      config.set("foo.bar.baz", "i'm back")
-      expect(observeHandler).toHaveBeenCalledWith("i'm back")
+      atom.config.set("foo.bar.baz", "i'm back")
+      expect(observeHandler).toHaveBeenCalledWith("i'm back", {previous: undefined})
+
+    it "does not fire the callback once the observe subscription is off'ed", ->
+      observeHandler.reset() # clear the initial call
+      observeSubscription.off()
+      atom.config.set('foo.bar.baz', "value 2")
+      expect(observeHandler).not.toHaveBeenCalled()
 
   describe ".initializeConfigDirectory()", ->
     beforeEach ->
-      config.configDirPath = '/tmp/dot-atom-dir'
-      expect(fsUtils.exists(config.configDirPath)).toBeFalsy()
+      atom.config.configDirPath = dotAtomPath
+      expect(fs.existsSync(atom.config.configDirPath)).toBeFalsy()
 
     afterEach ->
-      fsUtils.remove('/tmp/dot-atom-dir') if fsUtils.exists('/tmp/dot-atom-dir')
+      fs.removeSync(dotAtomPath) if fs.existsSync(dotAtomPath)
 
     describe "when the configDirPath doesn't exist", ->
       it "copies the contents of dot-atom to ~/.atom", ->
         initializationDone = false
         jasmine.unspy(window, "setTimeout")
-        config.initializeConfigDirectory ->
+        atom.config.initializeConfigDirectory ->
           initializationDone = true
 
         waitsFor -> initializationDone
 
         runs ->
-          expect(fsUtils.exists(config.configDirPath)).toBeTruthy()
-          expect(fsUtils.exists(path.join(config.configDirPath, 'packages'))).toBeTruthy()
-          expect(fsUtils.exists(path.join(config.configDirPath, 'snippets'))).toBeTruthy()
-          expect(fsUtils.exists(path.join(config.configDirPath, 'themes'))).toBeTruthy()
-          expect(fsUtils.isFileSync(path.join(config.configDirPath, 'config.cson'))).toBeTruthy()
+          expect(fs.existsSync(atom.config.configDirPath)).toBeTruthy()
+          expect(fs.existsSync(path.join(atom.config.configDirPath, 'packages'))).toBeTruthy()
+          expect(fs.existsSync(path.join(atom.config.configDirPath, 'snippets'))).toBeTruthy()
+          expect(fs.isFileSync(path.join(atom.config.configDirPath, 'config.cson'))).toBeTruthy()
 
   describe ".loadUserConfig()", ->
     beforeEach ->
-      config.configDirPath = '/tmp/dot-atom-dir'
-      config.configFilePath = path.join(config.configDirPath, "config.cson")
-      expect(fsUtils.exists(config.configDirPath)).toBeFalsy()
+      atom.config.configDirPath = dotAtomPath
+      atom.config.configFilePath = path.join(atom.config.configDirPath, "atom.config.cson")
+      expect(fs.existsSync(atom.config.configDirPath)).toBeFalsy()
 
     afterEach ->
-      fsUtils.remove('/tmp/dot-atom-dir') if fsUtils.exists('/tmp/dot-atom-dir')
+      fs.removeSync(dotAtomPath) if fs.existsSync(dotAtomPath)
 
     describe "when the config file contains valid cson", ->
       beforeEach ->
-        fsUtils.writeSync(config.configFilePath, "foo: bar: 'baz'")
-        config.loadUserConfig()
+        fs.writeFileSync(atom.config.configFilePath, "foo: bar: 'baz'")
+        atom.config.loadUserConfig()
 
       it "updates the config data based on the file contents", ->
-        expect(config.get("foo.bar")).toBe 'baz'
+        expect(atom.config.get("foo.bar")).toBe 'baz'
 
     describe "when the config file contains invalid cson", ->
       beforeEach ->
         spyOn(console, 'error')
-        fsUtils.writeSync(config.configFilePath, "{{{{{")
+        fs.writeFileSync(atom.config.configFilePath, "{{{{{")
 
       it "logs an error to the console and does not overwrite the config file on a subsequent save", ->
-        config.loadUserConfig()
+        atom.config.loadUserConfig()
         expect(console.error).toHaveBeenCalled()
-        config.set("hair", "blonde") # trigger a save
-        expect(config.save).not.toHaveBeenCalled()
+        atom.config.set("hair", "blonde") # trigger a save
+        expect(atom.config.save).not.toHaveBeenCalled()
 
     describe "when the config file does not exist", ->
       it "creates it with an empty object", ->
-        fsUtils.makeTree(config.configDirPath)
-        config.loadUserConfig()
-        expect(fsUtils.exists(config.configFilePath)).toBe true
-        expect(CSON.readFileSync(config.configFilePath)).toEqual {}
+        fs.makeTreeSync(atom.config.configDirPath)
+        atom.config.loadUserConfig()
+        expect(fs.existsSync(atom.config.configFilePath)).toBe true
+        expect(CSON.readFileSync(atom.config.configFilePath)).toEqual {}
 
   describe ".observeUserConfig()", ->
     updatedHandler = null
 
     beforeEach ->
-      config.configDirPath = '/tmp/dot-atom-dir'
-      config.configFilePath = path.join(config.configDirPath, "config.cson")
-      expect(fsUtils.exists(config.configDirPath)).toBeFalsy()
-      fsUtils.writeSync(config.configFilePath, "foo: bar: 'baz'")
-      config.loadUserConfig()
-      config.observeUserConfig()
+      atom.config.configDirPath = dotAtomPath
+      atom.config.configFilePath = path.join(atom.config.configDirPath, "atom.config.cson")
+      expect(fs.existsSync(atom.config.configDirPath)).toBeFalsy()
+      fs.writeFileSync(atom.config.configFilePath, "foo: bar: 'baz'")
+      atom.config.loadUserConfig()
+      atom.config.observeUserConfig()
       updatedHandler = jasmine.createSpy("updatedHandler")
-      config.on 'updated', updatedHandler
+      atom.config.on 'updated', updatedHandler
 
     afterEach ->
-      config.unobserveUserConfig()
-      fsUtils.remove('/tmp/dot-atom-dir') if fsUtils.exists('/tmp/dot-atom-dir')
+      atom.config.unobserveUserConfig()
+      fs.removeSync(dotAtomPath) if fs.existsSync(dotAtomPath)
 
     describe "when the config file changes to contain valid cson", ->
       it "updates the config data", ->
-        fsUtils.writeSync(config.configFilePath, "foo: { bar: 'quux', baz: 'bar'}")
+        fs.writeFileSync(atom.config.configFilePath, "foo: { bar: 'quux', baz: 'bar'}")
         waitsFor 'update event', -> updatedHandler.callCount > 0
         runs ->
-          expect(config.get('foo.bar')).toBe 'quux'
-          expect(config.get('foo.baz')).toBe 'bar'
+          expect(atom.config.get('foo.bar')).toBe 'quux'
+          expect(atom.config.get('foo.baz')).toBe 'bar'
 
     describe "when the config file changes to contain invalid cson", ->
       beforeEach ->
         spyOn(console, 'error')
-        fsUtils.writeSync(config.configFilePath, "}}}")
+        fs.writeFileSync(atom.config.configFilePath, "}}}")
         waitsFor "error to be logged", -> console.error.callCount > 0
 
       it "logs a warning and does not update config data", ->
         expect(updatedHandler.callCount).toBe 0
-        expect(config.get('foo.bar')).toBe 'baz'
-        config.set("hair", "blonde") # trigger a save
-        expect(config.save).not.toHaveBeenCalled()
+        expect(atom.config.get('foo.bar')).toBe 'baz'
+        atom.config.set("hair", "blonde") # trigger a save
+        expect(atom.config.save).not.toHaveBeenCalled()
 
       describe "when the config file subsequently changes again to contain valid cson", ->
         beforeEach ->
-          fsUtils.writeSync(config.configFilePath, "foo: bar: 'baz'")
+          fs.writeFileSync(atom.config.configFilePath, "foo: bar: 'baz'")
           waitsFor 'update event', -> updatedHandler.callCount > 0
 
         it "updates the config data and resumes saving", ->
-          config.set("hair", "blonde")
-          expect(config.save).toHaveBeenCalled()
+          atom.config.set("hair", "blonde")
+          expect(atom.config.save).toHaveBeenCalled()

spec/context-menu-manager-spec.coffee

@@ -0,0 +1,122 @@
+{$$} = require 'atom'
+
+ContextMenuManager = require '../src/context-menu-manager'
+
+describe "ContextMenuManager", ->
+  [contextMenu] = []
+
+  beforeEach ->
+    contextMenu = new ContextMenuManager
+
+  describe "adding definitions", ->
+    it 'loads',  ->
+      contextMenu.add 'file-path',
+        '.selector':
+          'label': 'command'
+
+      expect(contextMenu.definitions['.selector'][0].label).toEqual 'label'
+      expect(contextMenu.definitions['.selector'][0].command).toEqual 'command'
+
+    describe 'dev mode', ->
+      it 'loads',  ->
+        contextMenu.add 'file-path',
+          '.selector':
+            'label': 'command'
+        , devMode: true
+
+        expect(contextMenu.devModeDefinitions['.selector'][0].label).toEqual 'label'
+        expect(contextMenu.devModeDefinitions['.selector'][0].command).toEqual 'command'
+
+  describe "building a menu template", ->
+    beforeEach ->
+      contextMenu.definitions = {
+        '.parent':[
+          label: 'parent'
+          command: 'command-p'
+         ]
+        '.child': [
+          label: 'child'
+          command: 'command-c'
+        ]
+      }
+
+      contextMenu.devModeDefinitions =
+        '.parent': [
+          label: 'dev-label'
+          command: 'dev-command'
+        ]
+
+    describe "on a single element", ->
+      [element] = []
+
+      beforeEach ->
+        element = ($$ -> @div class: 'parent')[0]
+
+      it "creates a menu with a single item", ->
+        menu = contextMenu.combinedMenuTemplateForElement(element)
+
+        expect(menu[0].label).toEqual 'parent'
+        expect(menu[0].command).toEqual 'command-p'
+        expect(menu[1]).toBeUndefined()
+
+      describe "in devMode", ->
+        beforeEach -> contextMenu.devMode = true
+
+        it "creates a menu with development items", ->
+          menu = contextMenu.combinedMenuTemplateForElement(element)
+
+          expect(menu[0].label).toEqual 'parent'
+          expect(menu[0].command).toEqual 'command-p'
+          expect(menu[1].type).toEqual 'separator'
+          expect(menu[2].label).toEqual 'dev-label'
+          expect(menu[2].command).toEqual 'dev-command'
+
+
+    describe "on multiple elements", ->
+      [element] = []
+
+      beforeEach ->
+        element = $$ ->
+          @div class: 'parent', =>
+            @div class: 'child'
+
+        element = element.find('.child')[0]
+
+      it "creates a menu with a two items", ->
+        menu = contextMenu.combinedMenuTemplateForElement(element)
+
+        expect(menu[0].label).toEqual 'child'
+        expect(menu[0].command).toEqual 'command-c'
+        expect(menu[1].label).toEqual 'parent'
+        expect(menu[1].command).toEqual 'command-p'
+        expect(menu[2]).toBeUndefined()
+
+      describe "in devMode", ->
+        beforeEach -> contextMenu.devMode = true
+
+        xit "creates a menu with development items", ->
+          menu = contextMenu.combinedMenuTemplateForElement(element)
+
+          expect(menu[0].label).toEqual 'child'
+          expect(menu[0].command).toEqual 'command-c'
+          expect(menu[1].label).toEqual 'parent'
+          expect(menu[1].command).toEqual 'command-p'
+          expect(menu[2].label).toEqual 'dev-label'
+          expect(menu[2].command).toEqual 'dev-command'
+          expect(menu[3]).toBeUndefined()
+
+  describe "#executeBuildHandlers", ->
+    menuTemplate = [
+        label: 'label'
+        executeAtBuild: ->
+      ]
+    event =
+      target: null
+
+    it 'should invoke the executeAtBuild fn', ->
+      buildFn = spyOn(menuTemplate[0], 'executeAtBuild')
+      contextMenu.executeBuildHandlers(event, menuTemplate)
+
+      expect(buildFn).toHaveBeenCalled()
+      expect(buildFn.mostRecentCall.args[0]).toBe event
+

spec/deserializer-manager-spec.coffee

@@ -0,0 +1,33 @@
+DeserializerManager = require '../src/deserializer-manager'
+
+describe ".deserialize(state)", ->
+  deserializer = null
+
+  class Foo
+    @deserialize: ({name}) -> new Foo(name)
+    constructor: (@name) ->
+
+  beforeEach ->
+    deserializer = new DeserializerManager()
+    deserializer.add(Foo)
+
+  it "calls deserialize on the deserializer for the given state object, or returns undefined if one can't be found", ->
+    spyOn(console, 'warn')
+    object = deserializer.deserialize({ deserializer: 'Foo', name: 'Bar' })
+    expect(object.name).toBe 'Bar'
+    expect(deserializer.deserialize({ deserializer: 'Bogus' })).toBeUndefined()
+
+  describe "when the deserializer has a version", ->
+    beforeEach ->
+      Foo.version = 2
+
+    describe "when the deserialized state has a matching version", ->
+      it "attempts to deserialize the state", ->
+        object = deserializer.deserialize({ deserializer: 'Foo', version: 2, name: 'Bar' })
+        expect(object.name).toBe 'Bar'
+
+    describe "when the deserialized state has a non-matching version", ->
+      it "returns undefined", ->
+        expect(deserializer.deserialize({ deserializer: 'Foo', version: 3, name: 'Bar' })).toBeUndefined()
+        expect(deserializer.deserialize({ deserializer: 'Foo', version: 1, name: 'Bar' })).toBeUndefined()
+        expect(deserializer.deserialize({ deserializer: 'Foo', name: 'Bar' })).toBeUndefined()

spec/directory-spec.coffee

@@ -1,12 +1,12 @@
-Directory = require 'directory'
-fsUtils = require 'fs-utils'
+Directory = require '../src/directory'
+{fs} = require 'atom'
 path = require 'path'
 
 describe "Directory", ->
   directory = null
 
   beforeEach ->
-    directory = new Directory(fsUtils.resolveOnLoadPath('fixtures'))
+    directory = new Directory(path.join(__dirname, 'fixtures'))
 
   afterEach ->
     directory.off()
@@ -15,11 +15,11 @@ describe "Directory", ->
     temporaryFilePath = null
 
     beforeEach ->
-      temporaryFilePath = path.join(fsUtils.resolveOnLoadPath('fixtures'), 'temporary')
-      fsUtils.remove(temporaryFilePath) if fsUtils.exists(temporaryFilePath)
+      temporaryFilePath = path.join(__dirname, 'fixtures', 'temporary')
+      fs.removeSync(temporaryFilePath) if fs.existsSync(temporaryFilePath)
 
     afterEach ->
-      fsUtils.remove(temporaryFilePath) if fsUtils.exists(temporaryFilePath)
+      fs.removeSync(temporaryFilePath) if fs.existsSync(temporaryFilePath)
 
     it "triggers 'contents-changed' event handlers", ->
       changeHandler = null
@@ -27,13 +27,13 @@ describe "Directory", ->
       runs ->
         changeHandler = jasmine.createSpy('changeHandler')
         directory.on 'contents-changed', changeHandler
-        fsUtils.writeSync(temporaryFilePath, '')
+        fs.writeFileSync(temporaryFilePath, '')
 
       waitsFor "first change", -> changeHandler.callCount > 0
 
       runs ->
         changeHandler.reset()
-        fsUtils.remove(temporaryFilePath)
+        fs.removeSync(temporaryFilePath)
 
       waitsFor "second change", -> changeHandler.callCount > 0
 
@@ -42,10 +42,10 @@ describe "Directory", ->
 
     beforeEach ->
       temporaryFilePath = path.join(directory.path, 'temporary')
-      fsUtils.remove(temporaryFilePath) if fsUtils.exists(temporaryFilePath)
+      fs.removeSync(temporaryFilePath) if fs.existsSync(temporaryFilePath)
 
     afterEach ->
-      fsUtils.remove(temporaryFilePath) if fsUtils.exists(temporaryFilePath)
+      fs.removeSync(temporaryFilePath) if fs.existsSync(temporaryFilePath)
 
     it "no longer triggers events", ->
       changeHandler = null
@@ -53,7 +53,7 @@ describe "Directory", ->
       runs ->
         changeHandler = jasmine.createSpy('changeHandler')
         directory.on 'contents-changed', changeHandler
-        fsUtils.writeSync(temporaryFilePath, '')
+        fs.writeFileSync(temporaryFilePath, '')
 
       waitsFor "change event", -> changeHandler.callCount > 0
 
@@ -62,49 +62,63 @@ describe "Directory", ->
         directory.off()
       waits 20
 
-      runs -> fsUtils.remove(temporaryFilePath)
+      runs -> fs.removeSync(temporaryFilePath)
       waits 20
       runs -> expect(changeHandler.callCount).toBe 0
 
-  it "includes symlink information about entries", ->
-    entries = directory.getEntries()
-    for entry in entries
-      name = entry.getBaseName()
-      if name is 'symlink-to-dir' or name is 'symlink-to-file'
-        expect(entry.symlink).toBeTruthy()
-      else
-        expect(entry.symlink).toBeFalsy()
+  describe "on #darwin or #linux", ->
+    it "includes symlink information about entries", ->
+      entries = directory.getEntries()
+      for entry in entries
+        name = entry.getBaseName()
+        if name is 'symlink-to-dir' or name is 'symlink-to-file'
+          expect(entry.symlink).toBeTruthy()
+        else
+          expect(entry.symlink).toBeFalsy()
 
   describe ".relativize(path)", ->
-    it "returns a relative path based on the directory's path", ->
-      absolutePath = directory.getPath()
-      expect(directory.relativize(absolutePath)).toBe ''
-      expect(directory.relativize(path.join(absolutePath, "b"))).toBe "b"
-      expect(directory.relativize(path.join(absolutePath, "b/file.coffee"))).toBe "b/file.coffee"
-      expect(directory.relativize(path.join(absolutePath, "file.coffee"))).toBe "file.coffee"
+    describe "on #darwin or #linux", ->
+      it "returns a relative path based on the directory's path", ->
+        absolutePath = directory.getPath()
+        expect(directory.relativize(absolutePath)).toBe ''
+        expect(directory.relativize(path.join(absolutePath, "b"))).toBe "b"
+        expect(directory.relativize(path.join(absolutePath, "b/file.coffee"))).toBe "b/file.coffee"
+        expect(directory.relativize(path.join(absolutePath, "file.coffee"))).toBe "file.coffee"
 
-    it "returns a relative path based on the directory's symlinked source path", ->
-      symlinkPath = path.join(fsUtils.resolveOnLoadPath('fixtures'), 'symlink-to-dir')
-      symlinkDirectory = new Directory(symlinkPath)
-      realFilePath = fsUtils.resolveOnLoadPath('fixtures/dir/a')
-      expect(symlinkDirectory.relativize(symlinkPath)).toBe ''
-      expect(symlinkDirectory.relativize(realFilePath)).toBe 'a'
+      it "returns a relative path based on the directory's symlinked source path", ->
+        symlinkPath = path.join(__dirname, 'fixtures', 'symlink-to-dir')
+        symlinkDirectory = new Directory(symlinkPath)
+        realFilePath = require.resolve('./fixtures/dir/a')
+        expect(symlinkDirectory.relativize(symlinkPath)).toBe ''
+        expect(symlinkDirectory.relativize(realFilePath)).toBe 'a'
 
-    it "returns the full path if the directory's path is not a prefix of the path", ->
-      expect(directory.relativize('/not/relative')).toBe '/not/relative'
+      it "returns the full path if the directory's path is not a prefix of the path", ->
+        expect(directory.relativize('/not/relative')).toBe '/not/relative'
+
+    describe "on #win32", ->
+      it "returns a relative path based on the directory's path", ->
+        absolutePath = directory.getPath()
+        expect(directory.relativize(absolutePath)).toBe ''
+        expect(directory.relativize(path.join(absolutePath, "b"))).toBe "b"
+        expect(directory.relativize(path.join(absolutePath, "b/file.coffee"))).toBe "b\\file.coffee"
+        expect(directory.relativize(path.join(absolutePath, "file.coffee"))).toBe "file.coffee"
+
+      it "returns the full path if the directory's path is not a prefix of the path", ->
+        expect(directory.relativize('/not/relative')).toBe "\\not\\relative"
 
   describe ".contains(path)", ->
     it "returns true if the path is a child of the directory's path", ->
       absolutePath = directory.getPath()
       expect(directory.contains(path.join(absolutePath, "b"))).toBe true
-      expect(directory.contains(path.join(absolutePath, "b/file.coffee"))).toBe true
+      expect(directory.contains(path.join(absolutePath, "b", "file.coffee"))).toBe true
       expect(directory.contains(path.join(absolutePath, "file.coffee"))).toBe true
 
-    it "returns true if the path is a child of the directory's symlinked source path", ->
-      symlinkPath = path.join(fsUtils.resolveOnLoadPath('fixtures'), 'symlink-to-dir')
-      symlinkDirectory = new Directory(symlinkPath)
-      realFilePath = fsUtils.resolveOnLoadPath('fixtures/dir/a')
-      expect(symlinkDirectory.contains(realFilePath)).toBe true
-
     it "returns false if the directory's path is not a prefix of the path", ->
       expect(directory.contains('/not/relative')).toBe false
+
+    describe "on #darwin or #linux", ->
+      it "returns true if the path is a child of the directory's symlinked source path", ->
+        symlinkPath = path.join(__dirname, 'fixtures', 'symlink-to-dir')
+        symlinkDirectory = new Directory(symlinkPath)
+        realFilePath = require.resolve('./fixtures/dir/a')
+        expect(symlinkDirectory.contains(realFilePath)).toBe true

spec/display-buffer-spec.coffee

@@ -1,13 +1,12 @@
-DisplayBuffer = require 'display-buffer'
-Buffer = require 'text-buffer'
-_ = require 'underscore'
+DisplayBuffer = require '../src/display-buffer'
+{_} = require 'atom'
 
 describe "DisplayBuffer", ->
   [displayBuffer, buffer, changeHandler, tabLength] = []
   beforeEach ->
     tabLength = 2
-    atom.activatePackage('javascript-tmbundle', sync: true)
-    buffer = project.bufferForPath('sample.js')
+    atom.packages.activatePackage('language-javascript', sync: true)
+    buffer = atom.project.bufferForPathSync('sample.js')
     displayBuffer = new DisplayBuffer({buffer, tabLength})
     changeHandler = jasmine.createSpy 'changeHandler'
     displayBuffer.on 'changed', changeHandler
@@ -21,7 +20,7 @@ describe "DisplayBuffer", ->
       displayBuffer.setTabLength(4)
       displayBuffer.setEditorWidthInChars(64)
       displayBuffer.createFold(2, 4)
-      displayBuffer2 = deserialize(displayBuffer.serialize())
+      displayBuffer2 = atom.deserializers.deserialize(displayBuffer.serialize())
       expect(displayBuffer2.id).toBe displayBuffer.id
       expect(displayBuffer2.buffer).toBe displayBuffer.buffer
       expect(displayBuffer2.tokenizedBuffer.buffer).toBe displayBuffer.tokenizedBuffer.buffer
@@ -67,14 +66,14 @@ describe "DisplayBuffer", ->
     describe "rendering of soft-wrapped lines", ->
       describe "when editor.softWrapAtPreferredLineLength is set", ->
         it "uses the preferred line length as the soft wrap column when it is less than the configured soft wrap column", ->
-          config.set('editor.preferredLineLength', 100)
-          config.set('editor.softWrapAtPreferredLineLength', true)
+          atom.config.set('editor.preferredLineLength', 100)
+          atom.config.set('editor.softWrapAtPreferredLineLength', true)
           expect(displayBuffer.lineForRow(10).text).toBe '    return '
 
-          config.set('editor.preferredLineLength', 5)
+          atom.config.set('editor.preferredLineLength', 5)
           expect(displayBuffer.lineForRow(10).text).toBe 'funct'
 
-          config.set('editor.softWrapAtPreferredLineLength', false)
+          atom.config.set('editor.softWrapAtPreferredLineLength', false)
           expect(displayBuffer.lineForRow(10).text).toBe '    return '
 
       describe "when the line is shorter than the max line length", ->
@@ -155,7 +154,7 @@ describe "DisplayBuffer", ->
 
       describe "when a newline is inserted, deleted, and re-inserted at the end of a wrapped line (regression)", ->
         it "correctly renders the original wrapped line", ->
-          buffer = project.buildBuffer(null, '')
+          buffer = atom.project.buildBufferSync(null, '')
           displayBuffer = new DisplayBuffer({buffer, tabLength, editorWidthInChars: 30, softWrap: true})
 
           buffer.insert([0, 0], "the quick brown fox jumps over the lazy dog.")
@@ -207,7 +206,7 @@ describe "DisplayBuffer", ->
     beforeEach ->
       displayBuffer.destroy()
       buffer.release()
-      buffer = project.bufferForPath('two-hundred.txt')
+      buffer = atom.project.bufferForPathSync('two-hundred.txt')
       displayBuffer = new DisplayBuffer({buffer, tabLength})
       displayBuffer.on 'changed', changeHandler
 
@@ -601,7 +600,7 @@ describe "DisplayBuffer", ->
     it "unsubscribes all display buffer markers from their underlying buffer marker (regression)", ->
       marker = displayBuffer.markBufferPosition([12, 2])
       displayBuffer.destroy()
-      expect(marker.bufferMarker.subscriptionCount()).toBe 0
+      expect(marker.bufferMarker.getSubscriptionCount()).toBe 0
       expect( -> buffer.insert([12, 2], '\n')).not.toThrow()
 
   describe "markers", ->

spec/edit-session-replication-spec.coffee

@@ -1,62 +0,0 @@
-{Site} = require 'telepath'
-Environment = require 'environment'
-
-describe "EditSession replication", ->
-  [env1, env2, editSession1, editSession2] = []
-  beforeEach ->
-    env1 = new Environment(siteId: 1)
-    env2 = env1.clone(siteId: 2)
-    envConnection = env1.connect(env2)
-    doc2 = null
-
-    env1.run ->
-      editSession1 = project.open('sample.js')
-      editSession1.setScrollTop(5)
-      editSession1.setScrollLeft(5)
-      editSession1.setCursorScreenPosition([0, 5])
-      editSession1.addSelectionForBufferRange([[1, 2], [3, 4]])
-      doc1 = editSession1.getState()
-      doc2 = doc1.clone(env2.site)
-      envConnection.connect(doc1, doc2)
-
-    env2.run ->
-      editSession2 = deserialize(doc2)
-
-  afterEach ->
-    env1.destroy()
-    env2.destroy()
-
-  it "replicates the selections of existing replicas", ->
-    expect(editSession2.getRemoteSelectedBufferRanges()).toEqual editSession1.getSelectedBufferRanges()
-
-    editSession1.getLastSelection().setBufferRange([[2, 3], [4, 5]])
-    expect(editSession2.getRemoteSelectedBufferRanges()).toEqual editSession1.getSelectedBufferRanges()
-
-    editSession1.addCursorAtBufferPosition([5, 6])
-    expect(editSession2.getRemoteSelectedBufferRanges()).toEqual editSession1.getSelectedBufferRanges()
-
-    editSession1.consolidateSelections()
-    expect(editSession2.getRemoteSelectedBufferRanges()).toEqual editSession1.getSelectedBufferRanges()
-
-  it "introduces a local cursor for a new replica at the position of the last remote cursor", ->
-    expect(editSession2.getCursors().length).toBe 1
-    expect(editSession2.getSelections().length).toBe 1
-    expect(editSession2.getCursorBufferPosition()).toEqual [3, 4]
-    expect(editSession2.getSelectedBufferRanges()).toEqual [[[3, 4], [3, 4]]]
-
-    expect(editSession1.getRemoteCursors().length).toBe 1
-    expect(editSession1.getRemoteSelections().length).toBe 1
-    [cursor] = editSession1.getRemoteCursors()
-    [selection] = editSession1.getRemoteSelections()
-    expect(cursor.getBufferPosition()).toEqual [3, 4]
-    expect(selection.getBufferRange()).toEqual [[3, 4], [3, 4]]
-
-  it "replicates the scroll position", ->
-    expect(editSession2.getScrollTop()).toBe editSession1.getScrollTop()
-    expect(editSession2.getScrollLeft()).toBe editSession1.getScrollLeft()
-
-    editSession1.setScrollTop(10)
-    expect(editSession2.getScrollTop()).toBe 10
-
-    editSession2.setScrollLeft(20)
-    expect(editSession1.getScrollLeft()).toBe 20

spec/editor-replication-spec.coffee

@@ -1,37 +0,0 @@
-{Site} = require 'telepath'
-Editor = require 'editor'
-Environment = require 'environment'
-
-describe "Editor replication", ->
-  [env1, env2, editSession1, editSession2, editor1, editor2] = []
-
-  beforeEach ->
-    env1 = new Environment(siteId: 1)
-    env2 = env1.clone(siteId: 2)
-    envConnection = env1.connect(env2)
-    doc2 = null
-
-    env1.run ->
-      editSession1 = project.open('sample.js')
-      editSession1.setSelectedBufferRange([[1, 2], [3, 4]])
-      doc1 = editSession1.getState()
-      doc2 = doc1.clone(env2.site)
-      envConnection.connect(doc1, doc2)
-      editor1 = new Editor(editSession1)
-      editor1.attachToDom()
-
-    env2.run ->
-      editSession2 = deserialize(doc2)
-      editor2 = new Editor(editSession2)
-      editor2.attachToDom()
-
-  afterEach ->
-    env1.destroy()
-    env2.destroy()
-
-  it "displays the cursors and selections from all replicas", ->
-    expect(editor1.getSelectionViews().length).toBe 2
-    expect(editor2.getSelectionViews().length).toBe 2
-
-    expect(editor1.getCursorViews().length).toBe 2
-    expect(editor2.getCursorViews().length).toBe 2

spec/environment.coffee

@@ -1,58 +0,0 @@
-{Site} = require 'telepath'
-fsUtils = require 'fs-utils'
-Project = require 'project'
-
-module.exports =
-class Environment
-  constructor: ({@site, @state, siteId, projectPath}={}) ->
-    @site ?= new Site(siteId ? 1)
-    if @state?
-      @run => @project = deserialize(@state.get('project'))
-    else
-      @state = @site.createDocument({})
-      @project = new Project(projectPath ? fsUtils.resolveOnLoadPath('fixtures'))
-      @state.set(project: @project.getState())
-
-  clone: (params) ->
-    site = new Site(params.siteId)
-    new Environment(site: site, state: @state.clone(site))
-
-  destroy: ->
-    @project.destroy()
-
-  getState: -> @state
-
-  run: (fn) ->
-    uninstall = @install()
-    fn()
-    uninstall()
-
-  install: ->
-    oldSite = window.site
-    oldProject = window.project
-    window.site = @site
-    window.project = @project
-    ->
-      window.site = oldSite
-      window.project = oldProject
-
-  connect: (otherEnv) ->
-    new EnvironmentConnection(this, otherEnv)
-
-
-  connectDocuments: (docA, docB, envB) ->
-
-class EnvironmentConnection
-  constructor: (@envA, @envB) ->
-    @envA.getState().connect(@envB.getState())
-
-  connect: (docA, docB) ->
-    unless docA.site is @envA.site
-      throw new Error("Document and environment sites do not match (doc: site #{docA.site.id}, env: site #{@envA.site.id})")
-    unless docB.site is @envB.site
-      throw new Error("Document and environment sites do not match (doc: site #{docB.site.id}, env: site #{@envB.site.id})")
-
-    connection = docA.connect(docB)
-    connection.abFilter = (fn) => @envB.run(fn)
-    connection.baFilter = (fn) => @envA.run(fn)
-    connection

spec/event-emitter-spec.coffee

@@ -1,208 +0,0 @@
-_ = require 'underscore'
-EventEmitter = require 'event-emitter'
-
-describe "EventEmitter mixin", ->
-  [object, fooHandler1, fooHandler2, barHandler] = []
-
-  beforeEach ->
-    object = {}
-    _.extend(object, EventEmitter)
-
-    fooHandler1 = jasmine.createSpy('fooHandler1')
-    fooHandler2 = jasmine.createSpy('fooHandler2')
-    barHandler = jasmine.createSpy('barHandler')
-
-    object.on 'foo', fooHandler1
-    object.on 'foo', fooHandler2
-    object.on 'bar', barHandler
-
-  describe ".on", ->
-    describe "when called with multiple space-separated event names", ->
-      it "subscribes to each event names", ->
-        object.on '    a.b  c.d\te ', fooHandler1
-
-        object.trigger 'a'
-        expect(fooHandler1).toHaveBeenCalled()
-
-        fooHandler1.reset()
-        object.trigger 'c'
-        expect(fooHandler1).toHaveBeenCalled()
-
-        fooHandler1.reset()
-        object.trigger 'e'
-        expect(fooHandler1).toHaveBeenCalled()
-
-        fooHandler1.reset()
-        object.trigger ''
-        expect(fooHandler1).not.toHaveBeenCalled()
-
-  describe ".trigger", ->
-    describe "when called with a non-namespaced event name", ->
-      it "triggers all handlers registered for the given event name", ->
-        object.trigger 'foo', 'data'
-        expect(fooHandler1).toHaveBeenCalledWith('data')
-        expect(fooHandler2).toHaveBeenCalledWith('data')
-        expect(barHandler).not.toHaveBeenCalled()
-
-        fooHandler1.reset()
-        fooHandler2.reset()
-
-        object.trigger 'bar', 'stuff'
-        expect(barHandler).toHaveBeenCalledWith('stuff')
-
-    describe "when there are namespaced handlers", ->
-      it "triggers only handlers registered with the given namespace / event combination", ->
-        barHandler2 = jasmine.createSpy('barHandler2')
-        object.on('bar.ns1', barHandler2)
-
-        object.trigger('bar')
-
-        expect(barHandler).toHaveBeenCalled()
-        expect(barHandler2).toHaveBeenCalled()
-        barHandler.reset()
-        barHandler2.reset()
-
-        object.trigger('bar.ns1')
-
-        expect(barHandler).not.toHaveBeenCalled()
-        expect(barHandler2).toHaveBeenCalled()
-
-    it "does not raise exceptions when called with non-existent events / namespaces", ->
-      object.trigger('junk')
-      object.trigger('junk.garbage')
-
-  describe ".off", ->
-    describe "when called with no arguments", ->
-      it "removes all subscriptions", ->
-        object.off()
-        object.trigger 'foo'
-        expect(fooHandler1).not.toHaveBeenCalled()
-        expect(fooHandler2).not.toHaveBeenCalled()
-
-    describe "when called with multiple space-separated event names", ->
-      it "unsubscribes from each event name", ->
-        object.on 'a.b c.d e', fooHandler1
-        object.off ' a.b\te   '
-
-        object.trigger 'a'
-        expect(fooHandler1).not.toHaveBeenCalled()
-
-        fooHandler1.reset()
-        object.trigger 'e'
-        expect(fooHandler1).not.toHaveBeenCalled()
-
-        fooHandler1.reset()
-        object.trigger 'c.d'
-        expect(fooHandler1).toHaveBeenCalled()
-
-    describe "when called with a non-namespaced event name", ->
-      it "removes all handlers for that event name", ->
-        object.off 'foo'
-        object.trigger 'foo'
-        expect(fooHandler1).not.toHaveBeenCalled()
-        expect(fooHandler2).not.toHaveBeenCalled()
-
-    describe "when called with a non-namespaced event name and a handler function", ->
-      it "removes the specific handler", ->
-        object.off 'foo', fooHandler1
-        object.trigger 'foo'
-        expect(fooHandler1).not.toHaveBeenCalled()
-        expect(fooHandler2).toHaveBeenCalled()
-
-      it "does not throw an exception if there was not matching `on` call", ->
-        expect(-> object.off 'marco', -> "nothing").not.toThrow()
-
-    describe "when there are namespaced event handlers", ->
-      [barHandler2, bazHandler1, bazHandler2, bazHandler3] = []
-
-      beforeEach ->
-        barHandler2 = jasmine.createSpy('barHandler2')
-        bazHandler1 = jasmine.createSpy('bazHandler1')
-        bazHandler2 = jasmine.createSpy('bazHandler2')
-        bazHandler3 = jasmine.createSpy('bazHandler3')
-
-        object.on 'bar.ns1', barHandler2
-        object.on 'baz.ns1', bazHandler1
-        object.on 'baz.ns1', bazHandler2
-        object.on 'baz.ns2', bazHandler3
-
-      describe "when called with a namespaced event name", ->
-        it "removes all handlers in that namespace", ->
-          object.trigger 'baz'
-
-          expect(bazHandler1).toHaveBeenCalled()
-          expect(bazHandler2).toHaveBeenCalled()
-          expect(bazHandler3).toHaveBeenCalled()
-
-          bazHandler1.reset()
-          bazHandler2.reset()
-          bazHandler3.reset()
-
-          object.off 'baz.ns1'
-          object.trigger 'baz'
-          object.trigger 'baz.ns1'
-
-          expect(bazHandler1).not.toHaveBeenCalled()
-          expect(bazHandler2).not.toHaveBeenCalled()
-          expect(bazHandler3).toHaveBeenCalled()
-
-      describe "when called with just a namespace", ->
-        it "removes all handlers for all events on that namespace", ->
-          object.trigger 'bar'
-          expect(barHandler).toHaveBeenCalled()
-          expect(barHandler2).toHaveBeenCalled()
-
-          barHandler.reset()
-          barHandler2.reset()
-
-          object.trigger 'baz'
-          expect(bazHandler1).toHaveBeenCalled()
-          expect(bazHandler2).toHaveBeenCalled()
-          expect(bazHandler3).toHaveBeenCalled()
-
-          bazHandler1.reset()
-          bazHandler2.reset()
-          bazHandler3.reset()
-
-          object.off '.ns1'
-
-          object.trigger 'bar'
-          object.trigger 'bar.ns1'
-          expect(barHandler).toHaveBeenCalled()
-          expect(barHandler2).not.toHaveBeenCalled()
-
-          object.trigger 'baz'
-          object.trigger 'baz.ns1'
-
-          expect(bazHandler1).not.toHaveBeenCalled()
-          expect(bazHandler2).not.toHaveBeenCalled()
-          expect(bazHandler3).toHaveBeenCalled()
-
-        describe "when called with event names and namespaces that don't exist", ->
-          it "does not raise an exception", ->
-            object.off 'junk'
-            object.off '.garbage'
-            object.off 'junk.garbage'
-
-
-  describe ".one(event, callback)", ->
-    it "triggers the given callback once, then removes the subscription", ->
-      oneHandler = jasmine.createSpy('oneHandler')
-      object.one 'event', oneHandler
-
-      object.trigger('event')
-      expect(oneHandler).toHaveBeenCalled()
-      oneHandler.reset()
-
-      object.trigger('event')
-      expect(oneHandler).not.toHaveBeenCalled()
-
-  describe ".subscriptionCount()", ->
-    it "returns the total number of subscriptions on the object", ->
-      expect(object.subscriptionCount()).toBe 3
-
-      object.on 'baz', ->
-      expect(object.subscriptionCount()).toBe 4
-
-      object.off 'foo'
-      expect(object.subscriptionCount()).toBe 2

spec/file-spec.coffee

@@ -1,121 +1,132 @@
-File = require 'file'
-fsUtils = require 'fs-utils'
+{File, fs} = require 'atom'
 path = require 'path'
 
 describe 'File', ->
   [filePath, file] = []
 
   beforeEach ->
-    filePath = path.join(fsUtils.resolveOnLoadPath('fixtures'), "atom-file-test.txt") # Don't put in /tmp because /tmp symlinks to /private/tmp and screws up the rename test
-    fsUtils.remove(filePath) if fsUtils.exists(filePath)
-    fsUtils.writeSync(filePath, "this is old!")
+    filePath = path.join(__dirname, 'fixtures', 'atom-file-test.txt') # Don't put in /tmp because /tmp symlinks to /private/tmp and screws up the rename test
+    fs.removeSync(filePath) if fs.existsSync(filePath)
+    fs.writeFileSync(filePath, "this is old!")
     file = new File(filePath)
-    file.read()
 
   afterEach ->
     file.off()
-    fsUtils.remove(filePath) if fsUtils.exists(filePath)
+    fs.removeSync(filePath) if fs.existsSync(filePath)
 
-  describe "when the contents of the file change", ->
-    it "triggers 'contents-changed' event handlers", ->
-      changeHandler = null
-      changeHandler = jasmine.createSpy('changeHandler')
-      file.on 'contents-changed', changeHandler
-      fsUtils.writeSync(file.getPath(), "this is new!")
+  describe "when the file has not been read", ->
+    describe "when the contents of the file change", ->
+      it "triggers 'contents-changed' event handlers", ->
+        file.on 'contents-changed', changeHandler = jasmine.createSpy('changeHandler')
+        fs.writeFileSync(file.getPath(), "this is new!")
 
-      waitsFor "change event", ->
-        changeHandler.callCount > 0
-
-      runs ->
-        changeHandler.reset()
-        fsUtils.writeSync(file.getPath(), "this is newer!")
-
-      waitsFor "second change event", ->
-        changeHandler.callCount > 0
-
-  describe "when the file is removed", ->
-    it "triggers 'remove' event handlers", ->
-      removeHandler = null
-      removeHandler = jasmine.createSpy('removeHandler')
-      file.on 'removed', removeHandler
-      fsUtils.remove(file.getPath())
-
-      waitsFor "remove event", ->
-        removeHandler.callCount > 0
-
-  describe "when a file is moved (via the filesystem)", ->
-    newPath = null
+        waitsFor "change event", ->
+          changeHandler.callCount > 0
 
+  describe "when the file has already been read", ->
     beforeEach ->
-      newPath = path.join(path.dirname(filePath), "atom-file-was-moved-test.txt")
+      file.readSync()
 
-    afterEach ->
-      if fsUtils.exists(newPath)
-        fsUtils.remove(newPath)
-        waitsFor "remove event", (done) -> file.on 'removed', done
+    describe "when the contents of the file change", ->
+      it "triggers 'contents-changed' event handlers", ->
+        changeHandler = null
+        changeHandler = jasmine.createSpy('changeHandler')
+        file.on 'contents-changed', changeHandler
+        fs.writeFileSync(file.getPath(), "this is new!")
 
-    it "it updates its path", ->
-      jasmine.unspy(window, "setTimeout")
-      moveHandler = null
-      moveHandler = jasmine.createSpy('moveHandler')
-      file.on 'moved', moveHandler
+        waitsFor "change event", ->
+          changeHandler.callCount > 0
 
-      fsUtils.move(filePath, newPath)
+        runs ->
+          changeHandler.reset()
+          fs.writeFileSync(file.getPath(), "this is newer!")
 
-      waitsFor "move event", ->
-        moveHandler.callCount > 0
+        waitsFor "second change event", ->
+          changeHandler.callCount > 0
 
-      runs ->
-        expect(file.getPath()).toBe newPath
+    describe "when the file is removed", ->
+      it "triggers 'remove' event handlers", ->
+        removeHandler = null
+        removeHandler = jasmine.createSpy('removeHandler')
+        file.on 'removed', removeHandler
+        fs.removeSync(file.getPath())
 
-    it "maintains 'contents-changed' events set on previous path", ->
-      jasmine.unspy(window, "setTimeout")
-      moveHandler = null
-      moveHandler = jasmine.createSpy('moveHandler')
-      file.on 'moved', moveHandler
-      changeHandler = null
-      changeHandler = jasmine.createSpy('changeHandler')
-      file.on 'contents-changed', changeHandler
+        waitsFor "remove event", ->
+          removeHandler.callCount > 0
 
-      fsUtils.move(filePath, newPath)
+    describe "when a file is moved (via the filesystem)", ->
+      newPath = null
 
-      waitsFor "move event", ->
-        moveHandler.callCount > 0
+      beforeEach ->
+        newPath = path.join(path.dirname(filePath), "atom-file-was-moved-test.txt")
 
-      runs ->
-        expect(changeHandler).not.toHaveBeenCalled()
-        fsUtils.writeSync(file.getPath(), "this is new!")
+      afterEach ->
+        if fs.existsSync(newPath)
+          fs.removeSync(newPath)
+          waitsFor "remove event", (done) -> file.on 'removed', done
 
-      waitsFor "change event", ->
-        changeHandler.callCount > 0
+      it "it updates its path", ->
+        jasmine.unspy(window, "setTimeout")
+        moveHandler = null
+        moveHandler = jasmine.createSpy('moveHandler')
+        file.on 'moved', moveHandler
 
-  describe "when a file is deleted and the recreated within a small amount of time (git sometimes does this)", ->
-    it "triggers a contents change event if the contents change", ->
-      jasmine.unspy(File.prototype, 'detectResurrectionAfterDelay')
-      jasmine.unspy(window, "setTimeout")
+        fs.moveSync(filePath, newPath)
 
-      changeHandler = jasmine.createSpy("file changed")
-      removeHandler = jasmine.createSpy("file removed")
-      file.on 'contents-changed', changeHandler
-      file.on 'removed', removeHandler
+        waitsFor "move event", ->
+          moveHandler.callCount > 0
 
-      expect(changeHandler).not.toHaveBeenCalled()
+        runs ->
+          expect(file.getPath()).toBe newPath
 
-      fsUtils.remove(filePath)
+      it "maintains 'contents-changed' events set on previous path", ->
+        jasmine.unspy(window, "setTimeout")
+        moveHandler = null
+        moveHandler = jasmine.createSpy('moveHandler')
+        file.on 'moved', moveHandler
+        changeHandler = null
+        changeHandler = jasmine.createSpy('changeHandler')
+        file.on 'contents-changed', changeHandler
+
+        fs.moveSync(filePath, newPath)
+
+        waitsFor "move event", ->
+          moveHandler.callCount > 0
+
+        runs ->
+          expect(changeHandler).not.toHaveBeenCalled()
+          fs.writeFileSync(file.getPath(), "this is new!")
+
+        waitsFor "change event", ->
+          changeHandler.callCount > 0
+
+    describe "when a file is deleted and the recreated within a small amount of time (git sometimes does this)", ->
+      it "triggers a contents change event if the contents change", ->
+        jasmine.unspy(File.prototype, 'detectResurrectionAfterDelay')
+        jasmine.unspy(window, "setTimeout")
+
+        changeHandler = jasmine.createSpy("file changed")
+        removeHandler = jasmine.createSpy("file removed")
+        file.on 'contents-changed', changeHandler
+        file.on 'removed', removeHandler
 
-      expect(changeHandler).not.toHaveBeenCalled()
-      waits 20
-      runs ->
-        fsUtils.writeSync(filePath, "HE HAS RISEN!")
         expect(changeHandler).not.toHaveBeenCalled()
 
-      waitsFor "resurrection change event", ->
-        changeHandler.callCount == 1
+        fs.removeSync(filePath)
 
-      runs ->
-        expect(removeHandler).not.toHaveBeenCalled()
-        fsUtils.writeSync(filePath, "Hallelujah!")
-        changeHandler.reset()
+        expect(changeHandler).not.toHaveBeenCalled()
+        waits 20
+        runs ->
+          fs.writeFileSync(filePath, "HE HAS RISEN!")
+          expect(changeHandler).not.toHaveBeenCalled()
 
-      waitsFor "post-resurrection change event", ->
-        changeHandler.callCount > 0
+        waitsFor "resurrection change event", ->
+          changeHandler.callCount == 1
+
+        runs ->
+          expect(removeHandler).not.toHaveBeenCalled()
+          fs.writeFileSync(filePath, "Hallelujah!")
+          changeHandler.reset()
+
+        waitsFor "post-resurrection change event", ->
+          changeHandler.callCount > 0

spec/fixtures/evil-files/a_file_with_utf8.txt

@@ -1 +0,0 @@
-I am evil because there's a UTF-8 character right here: ă

spec/fixtures/evil-files/file with spaces.txt

@@ -1 +0,0 @@
-I am evil because there are spaces in my name

spec/fixtures/evil-files/goddam newlines

@@ -1 +0,0 @@
-I am evil because there's a newline in my name

spec/fixtures/evil-files/quote".txt

@@ -1 +0,0 @@
-I am evil because there's a " in my filename. Why you do that!?

spec/fixtures/evil-files/utfă.md

@@ -1 +0,0 @@
-I am evil because there's a UTF-8 character in my name

spec/fixtures/gfm.md

@@ -1 +0,0 @@
-  * First list item

spec/fixtures/git/working-dir/.gitignore

@@ -1 +1,2 @@
-ignored.txt
+poop
+ignored.txt

spec/fixtures/git/working-dir/git.git/HEAD

@@ -0,0 +1 @@
+ref: refs/heads/master

spec/fixtures/git/working-dir/git.git/config

@@ -0,0 +1,6 @@
+[core]
+	repositoryformatversion = 0
+	filemode = true
+	bare = false
+	logallrefupdates = true
+	ignorecase = true

spec/fixtures/git/working-dir/git.git/refs/heads/master

@@ -0,0 +1 @@
+ef046e9eecaa5255ea5e9817132d4001724d6ae1

spec/fixtures/jquery-task-handler.coffee

@@ -1,6 +0,0 @@
-module.exports = ->
-  try
-    require 'jquery'
-    true
-  catch e
-    false

spec/fixtures/markdown/file.markdown

@@ -1,20 +0,0 @@
-## File.markdown
-
-:cool:
-
-```ruby
-def func
-  x = 1
-end
-```
-
-```
-function f(x) {
-  return x++;
-}
-```
-
-```kombucha
-drink-that-stuff:
-  tastes-weird~
-```

spec/fixtures/packages/package-with-activation-events/index.coffee

@@ -1,5 +1,5 @@
 class Foo
-  registerDeserializer(this)
+  atom.deserializers.add(this)
   @deserialize: ({data}) -> new Foo(data)
   constructor: (@data) ->
 
@@ -9,5 +9,5 @@ module.exports =
 
   activate: ->
     @activateCallCount++
-    rootView.getActiveView()?.command 'activation-event', =>
+    atom.rootView.getActiveView()?.command 'activation-event', =>
       @activationEventCallCount++

spec/fixtures/packages/package-with-broken-keymap/keymaps/broken.json

@@ -0,0 +1 @@
+INVALID

spec/fixtures/packages/package-with-broken-package-json/package.json

@@ -0,0 +1 @@
+INVALID

spec/fixtures/packages/package-with-menus-manifest/menus/menu-1.cson

@@ -0,0 +1,7 @@
+'menu': [
+  { 'label': 'Last' }
+]
+
+'context-menu':
+  '.test-1':
+    'Menu item 1': 'command-1'

spec/fixtures/packages/package-with-menus-manifest/menus/menu-2.cson

@@ -0,0 +1,7 @@
+'menu': [
+  { 'label': 'Second to Last' }
+]
+
+'context-menu':
+  '.test-1':
+    'Menu item 2': 'command-2'

spec/fixtures/packages/package-with-menus-manifest/menus/menu-3.cson

@@ -0,0 +1,3 @@
+'context-menu':
+  '.test-1':
+    'Menu item 3': 'command-3'

spec/fixtures/packages/package-with-menus-manifest/package.cson

@@ -0,0 +1 @@
+menus: ["menu-2", "menu-1"]

spec/fixtures/packages/package-with-menus/menus/menu-1.cson

@@ -0,0 +1,7 @@
+'menu': [
+  { 'label': 'Second to Last' }
+]
+
+'context-menu':
+  '.test-1':
+    'Menu item 1': 'command-1'

spec/fixtures/packages/package-with-menus/menus/menu-2.cson

@@ -0,0 +1,7 @@
+'menu': [
+  { 'label': 'Last' }
+]
+
+'context-menu':
+  '.test-1':
+    'Menu item 2': 'command-2'

spec/fixtures/packages/package-with-menus/menus/menu-3.cson

@@ -0,0 +1,7 @@
+'menu': [
+  { 'label': 'Second to Last' }
+]
+
+'context-menu':
+  '.test-1':
+    'Menu item 3': 'command-3'

spec/fixtures/packages/theme-with-index-css/package.json

@@ -0,0 +1,3 @@
+{
+  "theme": true
+}